Wall clock time and date at job start Tue Mar 31 2020 14:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48507 * 109.47138 * 270.00438 * 3 2 1 5 5 H 1.48500 * 109.47169 * 30.00096 * 3 2 1 6 6 H 1.48498 * 109.46996 * 150.00433 * 3 2 1 7 7 C 1.37881 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00236 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99790 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46686 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47358 * 55.00944 * 10 9 7 12 12 N 1.46899 * 109.47702 * 295.00245 * 10 9 7 13 13 C 1.46896 * 111.00255 * 155.00116 * 12 10 9 14 14 C 1.53000 * 109.47056 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.40699 * 304.83350 * 14 13 12 16 16 C 1.53276 * 109.33860 * 64.63227 * 14 13 12 17 17 N 1.47626 * 108.51316 * 182.86132 * 16 14 13 18 18 C 1.39692 * 116.08566 * 316.75537 * 17 16 14 19 19 C 1.35098 * 129.51660 * 192.53317 * 18 17 16 20 20 C 1.40092 * 107.60377 * 179.84451 * 19 18 17 21 21 N 1.31146 * 108.38867 * 0.08518 * 20 19 18 22 22 N 1.35864 * 122.53348 * 12.53173 * 18 17 16 23 23 C 1.46525 * 123.78517 * 0.20084 * 22 18 17 24 24 C 1.50707 * 109.46825 * 175.00127 * 10 9 7 25 25 C 1.38236 * 119.99554 * 79.73069 * 24 10 9 26 26 C 1.38244 * 119.99649 * 179.79201 * 25 24 10 27 27 C 1.38234 * 119.99824 * 0.43385 * 26 25 24 28 28 C 1.38237 * 120.00246 * 359.81563 * 27 26 25 29 29 C 1.38230 * 120.00100 * 260.00092 * 24 10 9 30 30 H 0.96999 * 120.00618 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46540 * 60.00386 * 9 7 2 32 32 H 1.08992 * 109.47338 * 300.00332 * 9 7 2 33 33 H 1.00904 * 111.00068 * 278.95980 * 12 10 9 34 34 H 1.09002 * 109.46791 * 60.00530 * 13 12 10 35 35 H 1.08999 * 109.47221 * 300.00524 * 13 12 10 36 36 H 1.09007 * 109.62861 * 302.56861 * 16 14 13 37 37 H 1.08995 * 109.63125 * 62.95305 * 16 14 13 38 38 H 0.96991 * 121.95820 * 136.76861 * 17 16 14 39 39 H 1.08002 * 126.19609 * 359.91341 * 19 18 17 40 40 H 1.07991 * 125.80665 * 180.02562 * 20 19 18 41 41 H 1.08997 * 109.56643 * 259.50544 * 23 22 18 42 42 H 1.09009 * 109.56219 * 139.15682 * 23 22 18 43 43 H 1.08001 * 120.00130 * 359.97438 * 25 24 10 44 44 H 1.07997 * 119.99855 * 180.27305 * 26 25 24 45 45 H 1.07999 * 119.99958 * 179.83549 * 27 26 25 46 46 H 1.07993 * 119.99973 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00027 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6365 -0.0010 11 1 3.5866 -3.1757 -0.8426 12 7 3.6333 -3.2931 1.2544 13 6 3.5544 -4.7500 1.0841 14 6 3.1479 -5.3972 2.4096 15 1 3.8428 -5.0897 3.1909 16 6 1.7312 -4.9455 2.7815 17 7 1.3842 -5.5242 4.0945 18 6 1.7350 -6.8624 4.2880 19 6 1.3586 -7.7173 5.2642 20 6 1.9792 -8.9477 5.0123 21 7 2.7025 -8.8313 3.9245 22 7 2.5692 -7.5281 3.4473 23 6 3.1872 -6.9228 2.2646 24 6 5.5234 -2.6383 -0.1254 25 6 6.3091 -2.3914 0.9848 26 6 7.6869 -2.3973 0.8717 27 6 8.2786 -2.6413 -0.3535 28 6 7.4928 -2.8832 -1.4648 29 6 6.1151 -2.8814 -1.3507 30 1 -0.4851 0.8400 0.0004 31 1 3.8751 -0.6804 0.8889 32 1 3.8745 -0.6800 -0.8910 33 1 4.2674 -3.0501 2.0007 34 1 4.5273 -5.1329 0.7758 35 1 2.8124 -4.9871 0.3217 36 1 1.6973 -3.8576 2.8402 37 1 1.0259 -5.2935 2.0268 38 1 0.9387 -5.0056 4.7825 39 1 0.6981 -7.4930 6.0887 40 1 1.8797 -9.8400 5.6123 41 1 2.6356 -7.2190 1.3725 42 1 4.2222 -7.2552 2.1831 43 1 5.8466 -2.1967 1.9412 44 1 8.3008 -2.2087 1.7399 45 1 9.3550 -2.6433 -0.4425 46 1 7.9552 -3.0734 -2.4220 47 1 5.5012 -3.0705 -2.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610972158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:37 Heat of formation + Delta-G solvation = 94.540175 kcal Electronic energy + Delta-G solvation = -27383.003041 eV Core-core repulsion = 23759.279641 eV Total energy + Delta-G solvation = -3623.723399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.32929 -40.56320 -38.71021 -37.06895 -35.08672 -34.41690 -32.97922 -31.78701 -30.92061 -30.76575 -29.62419 -26.78527 -26.24019 -25.10726 -23.59069 -23.14132 -22.49461 -21.93104 -21.20285 -20.17944 -18.93024 -18.30036 -17.80519 -17.02655 -16.82328 -16.44183 -16.26553 -16.06644 -15.81155 -15.60476 -15.32897 -14.91442 -14.76360 -14.60906 -14.37956 -14.17991 -14.10003 -13.88152 -13.60638 -13.37006 -13.32984 -12.87586 -12.83810 -12.35556 -12.26345 -12.16055 -12.06839 -11.87332 -11.66252 -11.59439 -11.50517 -11.23525 -11.13772 -10.65494 -9.79425 -9.78271 -9.55156 -9.15742 -8.58608 -8.15154 -6.12856 0.48879 0.52947 1.16515 1.37204 1.40072 1.48271 1.49501 2.05931 2.41193 2.43197 2.91192 3.10294 3.22840 3.59139 3.64473 3.83939 3.95993 4.01730 4.03199 4.18710 4.25098 4.31902 4.34812 4.45995 4.47654 4.61647 4.67128 4.69596 4.71638 4.77664 4.78823 4.92999 4.93447 5.06887 5.12205 5.13122 5.18273 5.26153 5.44619 5.44725 5.60045 5.64116 5.69173 5.77033 5.90429 6.15933 6.26030 6.36848 6.48420 6.59771 6.62594 6.94884 7.08491 7.47927 9.01365 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.003892 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.235291 B = 7193.235485 C = 9606.533595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.005 3.995 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.252 1.252 7 C -0.482 4.482 8 H 0.046 0.954 9 C 0.010 3.990 10 C 0.153 3.847 11 H 0.069 0.931 12 N -0.669 5.669 13 C 0.081 3.919 14 C -0.096 4.096 15 H 0.083 0.917 16 C 0.133 3.867 17 N -0.730 5.730 18 C 0.346 3.654 19 C -0.351 4.351 20 C 0.069 3.931 21 N -0.345 5.345 22 N -0.411 5.411 23 C 0.141 3.859 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.131 4.131 28 C -0.122 4.122 29 C -0.130 4.130 30 H 0.259 0.741 31 H 0.015 0.985 32 H 0.010 0.990 33 H 0.340 0.660 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.426 0.574 39 H 0.161 0.839 40 H 0.213 0.787 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.360 -11.509 5.848 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.190 4.190 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.176 1.176 7 C -0.521 4.521 8 H 0.064 0.936 9 C -0.028 4.028 10 C 0.043 3.957 11 H 0.087 0.913 12 N -0.300 5.300 13 C -0.050 4.050 14 C -0.117 4.117 15 H 0.102 0.898 16 C 0.009 3.991 17 N -0.372 5.372 18 C 0.120 3.880 19 C -0.385 4.385 20 C -0.117 4.117 21 N -0.166 5.166 22 N -0.201 5.201 23 C 0.020 3.980 24 C -0.116 4.116 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.140 4.140 29 C -0.149 4.149 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.266 0.734 39 H 0.178 0.822 40 H 0.229 0.771 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.159 0.841 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.431 -11.812 4.677 18.488 hybrid contribution -0.179 1.470 0.571 1.587 sum 13.252 -10.343 5.248 17.611 Atomic orbital electron populations 1.70046 1.07908 1.27269 1.54422 1.25768 0.95301 1.02405 0.95565 0.85927 0.79559 0.80106 0.78552 1.20078 1.21754 1.17634 1.21222 0.91040 0.92878 1.46912 0.93617 1.19459 0.94689 0.92946 0.95728 1.20270 0.87571 0.95864 0.92037 0.91261 1.60457 1.56222 1.06768 1.06588 1.21708 1.00165 0.87902 0.95182 1.21613 0.98266 0.92499 0.99304 0.89817 1.21589 0.93927 0.99968 0.83649 1.44342 1.67996 1.06893 1.18012 1.18544 0.91291 0.86025 0.92091 1.20660 1.17086 0.93786 1.06977 1.24242 0.94071 0.99260 0.94081 1.77198 1.27521 0.95840 1.16078 1.48703 1.38867 1.08766 1.23736 1.21720 0.99735 0.91751 0.84840 1.20905 0.96969 0.99170 0.94570 1.21090 0.94484 1.00939 0.98421 1.21394 0.94287 0.99513 0.98767 1.21457 1.00959 0.99893 0.92589 1.21426 0.93222 0.99512 0.99818 1.21265 0.95799 1.00804 0.97011 0.93161 0.96639 0.97194 0.83986 0.93711 0.91171 0.88363 0.93328 0.73384 0.82190 0.77096 0.89918 0.88062 0.86018 0.84176 0.83752 0.84085 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.93 43.88 27.47 68.60 1.88 45.76 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 7 C -0.48 -25.95 9.39 25.60 0.24 -25.71 16 8 H 0.05 2.70 7.99 -2.91 -0.02 2.68 16 9 C 0.01 0.42 3.70 29.85 0.11 0.53 16 10 C 0.15 5.26 2.17 44.17 0.10 5.36 16 11 H 0.07 2.52 7.66 -2.38 -0.02 2.50 16 12 N -0.67 -20.53 5.34 -495.45 -2.65 -23.18 16 13 C 0.08 2.04 4.85 86.30 0.42 2.45 16 14 C -0.10 -2.25 2.51 -10.60 -0.03 -2.28 16 15 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.13 3.56 6.28 86.26 0.54 4.10 16 17 N -0.73 -17.97 6.08 -342.17 -2.08 -20.05 16 18 C 0.35 9.29 7.58 130.83 0.99 10.28 16 19 C -0.35 -8.47 10.83 22.00 0.24 -8.23 16 20 C 0.07 1.63 12.03 85.25 1.03 2.65 16 21 N -0.34 -9.90 12.63 -56.72 -0.72 -10.61 16 22 N -0.41 -11.45 4.07 -344.58 -1.40 -12.85 16 23 C 0.14 3.32 6.62 86.47 0.57 3.89 16 24 C -0.11 -3.33 4.71 -19.86 -0.09 -3.43 16 25 C -0.13 -3.41 9.11 22.27 0.20 -3.20 16 26 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 27 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 28 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 29 C -0.13 -3.45 9.67 22.27 0.22 -3.24 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.02 0.68 7.20 -2.39 -0.02 0.66 16 32 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 33 H 0.34 9.51 6.36 -89.69 -0.57 8.94 16 34 H 0.04 1.03 8.00 -2.39 -0.02 1.01 16 35 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 36 H 0.10 2.97 7.68 -2.38 -0.02 2.95 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.43 8.91 8.96 -92.71 -0.83 8.08 16 39 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.21 3.17 8.06 -2.92 -0.02 3.15 16 41 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 42 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.12 3.03 6.53 -2.91 -0.02 3.01 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.12 3.10 8.04 -2.91 -0.02 3.08 16 Total: -1.00 -68.63 380.53 0.53 -68.10 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.48 Total: 34.36 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 5.67 Total: -23.30 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -6.55 Total: -124.93 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -68.63 0.53 -68.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.644 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds