Wall clock time and date at job start Tue Mar 31 2020 14:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99461 * 2 1 4 4 H 1.48503 * 109.46905 * 269.99717 * 3 2 1 5 5 H 1.48499 * 109.47464 * 30.00201 * 3 2 1 6 6 H 1.48501 * 109.46766 * 150.00293 * 3 2 1 7 7 C 1.37870 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99459 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00323 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47311 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46897 * 54.99741 * 10 9 7 12 12 N 1.46903 * 109.47075 * 295.00179 * 10 9 7 13 13 C 1.46905 * 110.99852 * 154.99955 * 12 10 9 14 14 C 1.53001 * 109.46762 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.40721 * 54.83866 * 14 13 12 16 16 C 1.53275 * 109.40664 * 295.00000 * 14 13 12 17 17 N 1.47626 * 108.51579 * 177.09934 * 16 14 13 18 18 C 1.39692 * 116.09098 * 43.22082 * 17 16 14 19 19 C 1.35086 * 129.51846 * 167.49796 * 18 17 16 20 20 C 1.40099 * 107.60252 * 180.02562 * 19 18 17 21 21 N 1.31131 * 108.39224 * 359.97438 * 20 19 18 22 22 N 1.35860 * 122.53047 * 347.50084 * 18 17 16 23 23 C 1.46529 * 123.78896 * 359.77875 * 22 18 17 24 24 C 1.50693 * 109.47119 * 174.99857 * 10 9 7 25 25 C 1.38233 * 120.00207 * 259.99622 * 24 10 9 26 26 C 1.38234 * 120.00037 * 179.72405 * 25 24 10 27 27 C 1.38234 * 120.00240 * 0.26327 * 26 25 24 28 28 C 1.38238 * 119.99693 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00082 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00470 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47157 * 60.00063 * 9 7 2 32 32 H 1.08999 * 109.47256 * 300.00069 * 9 7 2 33 33 H 1.00902 * 111.00112 * 278.95034 * 12 10 9 34 34 H 1.08992 * 109.46893 * 299.99577 * 13 12 10 35 35 H 1.09002 * 109.46849 * 59.99957 * 13 12 10 36 36 H 1.08999 * 109.63090 * 296.80618 * 16 14 13 37 37 H 1.09000 * 109.63111 * 57.19073 * 16 14 13 38 38 H 0.97002 * 121.95652 * 223.20020 * 17 16 14 39 39 H 1.08000 * 126.19939 * 0.06356 * 19 18 17 40 40 H 1.08003 * 125.80185 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.56729 * 220.83580 * 23 22 18 42 42 H 1.09005 * 109.56078 * 100.48963 * 23 22 18 43 43 H 1.08002 * 120.00157 * 0.02562 * 25 24 10 44 44 H 1.07999 * 120.00009 * 180.28389 * 26 25 24 45 45 H 1.07997 * 120.00460 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.99643 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00025 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 1 3.5873 -3.1752 -0.8422 12 7 3.6325 -3.2935 1.2549 13 6 3.5539 -4.7504 1.0838 14 6 3.1475 -5.3982 2.4091 15 1 2.2197 -4.9484 2.7626 16 6 4.2519 -5.1700 3.4472 17 7 3.8099 -5.7407 4.7350 18 6 3.1946 -6.9932 4.6730 19 6 2.8970 -7.8551 5.6697 20 6 2.2844 -8.9751 5.0927 21 7 2.2178 -8.7883 3.7964 22 7 2.7837 -7.5483 3.5030 23 6 2.9343 -6.9013 2.1969 24 6 5.5235 -2.6381 -0.1234 25 6 6.1162 -2.8807 -1.3484 26 6 7.4939 -2.8766 -1.4626 27 6 8.2789 -2.6353 -0.3507 28 6 7.6863 -2.3975 0.8754 29 6 6.3087 -2.4016 0.9896 30 1 -0.4851 0.8400 -0.0004 31 1 3.8746 -0.6807 0.8905 32 1 3.8753 -0.6795 -0.8894 33 1 4.2661 -3.0508 2.0017 34 1 2.8123 -4.9871 0.3209 35 1 4.5269 -5.1331 0.7760 36 1 5.1674 -5.6644 3.1226 37 1 4.4332 -4.1011 3.5600 38 1 3.9395 -5.2734 5.5751 39 1 3.0950 -7.7072 6.7211 40 1 1.9275 -9.8444 5.6250 41 1 2.0341 -7.0623 1.6038 42 1 3.7955 -7.3225 1.6781 43 1 5.5029 -3.0687 -2.2173 44 1 7.9568 -3.0617 -2.4206 45 1 9.3552 -2.6316 -0.4400 46 1 8.2997 -2.2093 1.7441 47 1 5.8457 -2.2162 1.9475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610972159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:41 Heat of formation + Delta-G solvation = 115.439349 kcal Electronic energy + Delta-G solvation = -27432.808904 eV Core-core repulsion = 23809.991761 eV Total energy + Delta-G solvation = -3622.817143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40086 -39.51921 -37.78924 -35.89350 -33.91897 -32.69840 -31.77638 -30.82584 -29.86563 -29.24516 -28.61650 -25.62309 -25.20037 -23.99499 -22.45617 -21.80236 -21.49626 -20.93506 -19.84403 -19.22782 -17.37597 -17.34815 -16.47106 -16.13277 -15.89462 -15.24609 -15.08844 -14.90121 -14.60525 -14.39304 -14.14700 -13.94166 -13.58213 -13.43508 -13.29952 -13.17656 -12.72240 -12.67288 -12.42859 -12.36672 -12.04138 -11.46924 -11.32180 -11.22319 -11.12780 -11.03002 -10.79528 -10.54724 -10.38507 -10.31224 -10.15882 -9.72688 -9.13756 -8.83338 -8.82899 -8.48965 -8.47053 -7.95556 -7.68672 -5.97286 -3.92414 1.47979 1.49596 2.12846 2.40669 2.97636 3.23193 3.31524 3.39899 3.42251 3.89665 4.17493 4.48309 4.48854 4.65441 4.86086 4.90103 4.96714 4.99868 5.07722 5.18710 5.22339 5.24244 5.32454 5.37631 5.48838 5.53522 5.59644 5.62310 5.65989 5.69348 5.80655 5.94330 5.98772 6.06001 6.11206 6.18445 6.32424 6.47602 6.56058 6.57841 6.73489 6.78279 7.03505 7.10802 7.15248 7.25480 7.43053 7.58309 7.73997 7.86385 7.98751 8.62661 9.12750 9.65088 11.16388 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.003758 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.703297 B = 7449.536996 C = 9418.881302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.872 3.128 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.493 4.493 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.140 3.860 11 H 0.083 0.917 12 N -0.655 5.655 13 C 0.072 3.928 14 C -0.119 4.119 15 H 0.102 0.898 16 C 0.123 3.877 17 N -0.734 5.734 18 C 0.360 3.640 19 C -0.342 4.342 20 C 0.067 3.933 21 N -0.309 5.309 22 N -0.397 5.397 23 C 0.142 3.858 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.135 4.135 28 C -0.118 4.118 29 C -0.122 4.122 30 H 0.260 0.740 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.330 0.670 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.419 0.581 39 H 0.142 0.858 40 H 0.180 0.820 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.228 -11.819 6.203 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.531 4.531 8 H 0.096 0.904 9 C -0.032 4.032 10 C 0.030 3.970 11 H 0.101 0.899 12 N -0.286 5.286 13 C -0.059 4.059 14 C -0.140 4.140 15 H 0.120 0.880 16 C -0.001 4.001 17 N -0.376 5.376 18 C 0.135 3.865 19 C -0.376 4.376 20 C -0.120 4.120 21 N -0.130 5.130 22 N -0.186 5.186 23 C 0.020 3.980 24 C -0.099 4.099 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.153 4.153 28 C -0.136 4.136 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.257 0.743 39 H 0.160 0.840 40 H 0.197 0.803 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.048 -12.011 4.701 18.347 hybrid contribution 1.692 1.425 1.052 2.450 sum 14.740 -10.586 5.754 19.038 Atomic orbital electron populations 1.69902 1.06144 1.26506 1.52012 1.24973 0.94634 0.98700 0.95272 0.86920 0.80360 0.84447 0.78316 1.20571 1.21567 1.19262 1.20964 0.88667 0.94427 1.49018 0.90382 1.19571 0.97846 0.89509 0.96321 1.20715 0.85701 0.98904 0.91679 0.89910 1.60611 1.55759 1.05303 1.06958 1.21810 0.99793 0.89286 0.94989 1.21890 1.01488 0.93366 0.97268 0.87987 1.21737 0.95840 0.99568 0.82977 1.44156 1.67140 1.16973 1.09304 1.18146 0.93609 0.86954 0.87769 1.20292 1.21206 0.97214 0.98863 1.23650 0.98394 0.98733 0.91240 1.77274 1.21659 0.97785 1.16237 1.48585 1.49197 1.15151 1.05642 1.21680 1.03538 0.91303 0.81447 1.21177 0.98605 0.96674 0.93398 1.21119 0.94632 1.00255 0.97406 1.21123 0.93974 1.00298 0.98353 1.21052 0.99402 1.01649 0.93174 1.21068 0.94770 1.00323 0.97487 1.20950 0.93580 1.00907 0.98643 0.92968 0.96429 0.96741 0.84921 0.89888 0.95314 0.92288 0.89007 0.74275 0.84011 0.80308 0.88483 0.90389 0.86010 0.86480 0.86657 0.86520 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 3 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.49 -13.29 9.39 -34.44 -0.32 -13.61 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C 0.01 0.12 3.70 -27.88 -0.10 0.01 16 10 C 0.14 2.43 2.17 -68.87 -0.15 2.28 16 11 H 0.08 1.48 7.66 -51.93 -0.40 1.09 16 12 N -0.66 -10.25 5.95 -107.95 -0.64 -10.89 16 13 C 0.07 0.92 4.92 -3.82 -0.02 0.90 16 14 C -0.12 -1.42 2.56 -90.33 -0.23 -1.65 16 15 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 16 C 0.12 1.28 6.20 -3.28 -0.02 1.26 16 17 N -0.73 -7.78 6.08 -59.51 -0.36 -8.14 16 18 C 0.36 4.66 7.58 -152.76 -1.16 3.51 16 19 C -0.34 -4.13 10.83 -40.00 -0.43 -4.57 16 20 C 0.07 0.82 12.03 -17.15 -0.21 0.61 16 21 N -0.31 -4.55 12.63 30.72 0.39 -4.17 16 22 N -0.40 -5.54 4.07 -60.27 -0.25 -5.78 16 23 C 0.14 1.71 6.62 -3.87 -0.03 1.68 16 24 C -0.10 -1.45 4.71 -104.63 -0.49 -1.94 16 25 C -0.12 -1.60 9.67 -39.58 -0.38 -1.98 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 28 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 29 C -0.12 -1.65 9.12 -39.58 -0.36 -2.01 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 33 H 0.33 4.61 4.54 -39.29 -0.18 4.43 16 34 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 35 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.88 6.56 -51.93 -0.34 0.54 16 38 H 0.42 3.52 8.96 -40.82 -0.37 3.16 16 39 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 43 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.49 6.50 -52.49 -0.34 1.15 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -32.90 378.23 -11.29 -44.19 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.04 Total: 8.56 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -5.20 Total: -19.39 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.09 Total: -55.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.90 -11.29 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.625 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds