Wall clock time and date at job start Tue Mar 31 2020 14:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99461 * 2 1 4 4 H 1.48503 * 109.46905 * 269.99717 * 3 2 1 5 5 H 1.48499 * 109.47464 * 30.00201 * 3 2 1 6 6 H 1.48501 * 109.46766 * 150.00293 * 3 2 1 7 7 C 1.37870 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99459 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00323 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47311 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46897 * 54.99741 * 10 9 7 12 12 N 1.46903 * 109.47075 * 295.00179 * 10 9 7 13 13 C 1.46905 * 110.99852 * 154.99955 * 12 10 9 14 14 C 1.53001 * 109.46762 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.40721 * 54.83866 * 14 13 12 16 16 C 1.53275 * 109.40664 * 295.00000 * 14 13 12 17 17 N 1.47626 * 108.51579 * 177.09934 * 16 14 13 18 18 C 1.39692 * 116.09098 * 43.22082 * 17 16 14 19 19 C 1.35086 * 129.51846 * 167.49796 * 18 17 16 20 20 C 1.40099 * 107.60252 * 180.02562 * 19 18 17 21 21 N 1.31131 * 108.39224 * 359.97438 * 20 19 18 22 22 N 1.35860 * 122.53047 * 347.50084 * 18 17 16 23 23 C 1.46529 * 123.78896 * 359.77875 * 22 18 17 24 24 C 1.50693 * 109.47119 * 174.99857 * 10 9 7 25 25 C 1.38233 * 120.00207 * 259.99622 * 24 10 9 26 26 C 1.38234 * 120.00037 * 179.72405 * 25 24 10 27 27 C 1.38234 * 120.00240 * 0.26327 * 26 25 24 28 28 C 1.38238 * 119.99693 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00082 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00470 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47157 * 60.00063 * 9 7 2 32 32 H 1.08999 * 109.47256 * 300.00069 * 9 7 2 33 33 H 1.00902 * 111.00112 * 278.95034 * 12 10 9 34 34 H 1.08992 * 109.46893 * 299.99577 * 13 12 10 35 35 H 1.09002 * 109.46849 * 59.99957 * 13 12 10 36 36 H 1.08999 * 109.63090 * 296.80618 * 16 14 13 37 37 H 1.09000 * 109.63111 * 57.19073 * 16 14 13 38 38 H 0.97002 * 121.95652 * 223.20020 * 17 16 14 39 39 H 1.08000 * 126.19939 * 0.06356 * 19 18 17 40 40 H 1.08003 * 125.80185 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.56729 * 220.83580 * 23 22 18 42 42 H 1.09005 * 109.56078 * 100.48963 * 23 22 18 43 43 H 1.08002 * 120.00157 * 0.02562 * 25 24 10 44 44 H 1.07999 * 120.00009 * 180.28389 * 26 25 24 45 45 H 1.07997 * 120.00460 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.99643 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00025 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 1 3.5873 -3.1752 -0.8422 12 7 3.6325 -3.2935 1.2549 13 6 3.5539 -4.7504 1.0838 14 6 3.1475 -5.3982 2.4091 15 1 2.2197 -4.9484 2.7626 16 6 4.2519 -5.1700 3.4472 17 7 3.8099 -5.7407 4.7350 18 6 3.1946 -6.9932 4.6730 19 6 2.8970 -7.8551 5.6697 20 6 2.2844 -8.9751 5.0927 21 7 2.2178 -8.7883 3.7964 22 7 2.7837 -7.5483 3.5030 23 6 2.9343 -6.9013 2.1969 24 6 5.5235 -2.6381 -0.1234 25 6 6.1162 -2.8807 -1.3484 26 6 7.4939 -2.8766 -1.4626 27 6 8.2789 -2.6353 -0.3507 28 6 7.6863 -2.3975 0.8754 29 6 6.3087 -2.4016 0.9896 30 1 -0.4851 0.8400 -0.0004 31 1 3.8746 -0.6807 0.8905 32 1 3.8753 -0.6795 -0.8894 33 1 4.2661 -3.0508 2.0017 34 1 2.8123 -4.9871 0.3209 35 1 4.5269 -5.1331 0.7760 36 1 5.1674 -5.6644 3.1226 37 1 4.4332 -4.1011 3.5600 38 1 3.9395 -5.2734 5.5751 39 1 3.0950 -7.7072 6.7211 40 1 1.9275 -9.8444 5.6250 41 1 2.0341 -7.0623 1.6038 42 1 3.7955 -7.3225 1.6781 43 1 5.5029 -3.0687 -2.2173 44 1 7.9568 -3.0617 -2.4206 45 1 9.3552 -2.6316 -0.4400 46 1 8.2997 -2.2093 1.7441 47 1 5.8457 -2.2162 1.9475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610972159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:41 Heat of formation + Delta-G solvation = 94.746309 kcal Electronic energy + Delta-G solvation = -27433.706222 eV Core-core repulsion = 23809.991761 eV Total energy + Delta-G solvation = -3623.714461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35530 -40.58691 -38.77751 -37.06522 -35.10165 -34.45341 -33.01779 -31.77120 -30.93793 -30.74581 -29.67713 -26.81407 -26.32388 -25.23848 -23.55515 -23.13992 -22.48700 -21.94093 -21.16594 -20.22419 -18.98216 -18.30335 -17.94119 -17.06738 -16.91965 -16.37593 -16.29350 -16.04051 -15.88752 -15.57696 -15.20093 -15.09027 -14.81353 -14.66210 -14.37489 -14.17905 -14.12098 -13.89790 -13.64567 -13.41053 -13.38209 -12.87708 -12.83037 -12.33681 -12.31379 -12.16933 -12.08968 -11.86268 -11.64994 -11.60002 -11.50825 -11.27418 -11.15710 -10.68106 -9.79702 -9.78114 -9.54614 -9.16851 -8.61096 -8.17504 -6.16376 0.49737 0.54281 1.15298 1.36649 1.38457 1.47203 1.48971 2.05290 2.36798 2.41547 2.92066 3.09330 3.20561 3.49233 3.64051 3.83551 3.94527 3.99295 4.02313 4.17496 4.21619 4.30797 4.33184 4.42067 4.48060 4.55968 4.61003 4.66980 4.69082 4.74928 4.76213 4.85809 4.89183 5.08622 5.10096 5.13382 5.19171 5.23615 5.40165 5.43066 5.60887 5.65556 5.69734 5.75191 5.88807 6.16970 6.24608 6.34983 6.45965 6.58913 6.63313 6.91800 7.07383 7.44572 8.99618 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.003758 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.703297 B = 7449.536996 C = 9418.881302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.000 4.000 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.487 4.487 8 H 0.039 0.961 9 C 0.010 3.990 10 C 0.151 3.849 11 H 0.066 0.934 12 N -0.674 5.674 13 C 0.083 3.917 14 C -0.106 4.106 15 H 0.071 0.929 16 C 0.128 3.872 17 N -0.727 5.727 18 C 0.345 3.655 19 C -0.348 4.348 20 C 0.067 3.933 21 N -0.348 5.348 22 N -0.411 5.411 23 C 0.141 3.859 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.118 4.118 29 C -0.130 4.130 30 H 0.260 0.740 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.341 0.659 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.430 0.570 39 H 0.164 0.836 40 H 0.211 0.789 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.932 -11.644 7.190 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.195 4.195 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.173 1.173 7 C -0.525 4.525 8 H 0.057 0.943 9 C -0.028 4.028 10 C 0.041 3.959 11 H 0.085 0.915 12 N -0.307 5.307 13 C -0.048 4.048 14 C -0.127 4.127 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.370 5.370 18 C 0.120 3.880 19 C -0.381 4.381 20 C -0.119 4.119 21 N -0.170 5.170 22 N -0.201 5.201 23 C 0.020 3.980 24 C -0.116 4.116 25 C -0.150 4.150 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.136 4.136 29 C -0.149 4.149 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.162 0.838 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.270 0.730 39 H 0.182 0.818 40 H 0.228 0.772 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.158 0.842 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.784 -11.842 5.704 21.318 hybrid contribution 0.536 1.272 0.753 1.572 sum 17.319 -10.570 6.456 21.292 Atomic orbital electron populations 1.70073 1.08133 1.27410 1.54371 1.25867 0.95389 1.02816 0.95400 0.85828 0.79533 0.79499 0.78717 1.19825 1.21671 1.17270 1.21247 0.91336 0.92748 1.47165 0.94318 1.19456 0.94372 0.93063 0.95875 1.20270 0.87889 0.95800 0.91932 0.91527 1.60461 1.56529 1.06953 1.06732 1.21673 1.00209 0.87762 0.95126 1.21673 1.00760 0.93014 0.97218 0.91042 1.21733 0.95283 1.00277 0.82391 1.44171 1.66646 1.16280 1.09887 1.18522 0.93875 0.87804 0.87810 1.20668 1.20765 0.96881 0.99823 1.24267 0.97277 0.99703 0.90659 1.77224 1.23296 0.98689 1.17776 1.48717 1.49784 1.15332 1.06249 1.21691 1.03802 0.91214 0.81309 1.20859 0.96654 0.99343 0.94726 1.21247 0.95827 1.00884 0.96997 1.21414 0.93149 0.99512 0.99864 1.21466 1.00958 0.99833 0.92606 1.21399 0.94185 0.99251 0.98775 1.21081 0.94478 1.01001 0.98295 0.93094 0.96452 0.96952 0.83761 0.91499 0.93453 0.91127 0.87999 0.72989 0.81831 0.77202 0.89286 0.88992 0.86210 0.84199 0.83719 0.83856 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.00 0.02 5.47 84.65 0.46 0.48 16 3 Si 0.94 44.50 27.47 68.60 1.88 46.39 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.49 -27.17 9.39 25.60 0.24 -26.93 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 9 C 0.01 0.45 3.70 29.85 0.11 0.56 16 10 C 0.15 5.32 2.17 44.17 0.10 5.42 16 11 H 0.07 2.50 7.66 -2.39 -0.02 2.48 16 12 N -0.67 -21.35 5.95 -495.45 -2.95 -24.30 16 13 C 0.08 2.15 4.92 86.30 0.42 2.57 16 14 C -0.11 -2.54 2.56 -10.60 -0.03 -2.57 16 15 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 16 C 0.13 2.48 6.20 86.26 0.54 3.01 16 17 N -0.73 -14.45 6.08 -342.19 -2.08 -16.53 16 18 C 0.34 8.63 7.58 130.82 0.99 9.62 16 19 C -0.35 -7.90 10.83 22.00 0.24 -7.66 16 20 C 0.07 1.56 12.03 85.25 1.03 2.59 16 21 N -0.35 -10.23 12.63 -56.71 -0.72 -10.95 16 22 N -0.41 -11.45 4.07 -344.59 -1.40 -12.85 16 23 C 0.14 3.45 6.62 86.47 0.57 4.02 16 24 C -0.11 -3.27 4.71 -19.87 -0.09 -3.36 16 25 C -0.13 -3.43 9.67 22.27 0.22 -3.21 16 26 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 27 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 28 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 29 C -0.13 -3.19 9.12 22.27 0.20 -2.99 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 32 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 33 H 0.34 9.27 4.54 -89.69 -0.41 8.86 16 34 H 0.07 1.93 8.05 -2.39 -0.02 1.91 16 35 H 0.05 1.07 8.00 -2.39 -0.02 1.05 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.78 6.56 -2.39 -0.02 1.76 16 38 H 0.43 6.49 8.96 -92.71 -0.83 5.66 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.09 1.95 8.12 -2.38 -0.02 1.93 16 43 H 0.12 3.06 8.04 -2.91 -0.02 3.03 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 46 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.12 2.82 6.50 -2.91 -0.02 2.80 16 Total: -1.00 -73.47 378.23 0.39 -73.08 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.31 Total: 30.53 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 5.67 Total: -25.16 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.85 Total: -124.83 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -73.47 0.39 -73.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.825 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds