Wall clock time and date at job start Tue Mar 31 2020 14:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99997 * 2 1 4 4 H 1.48499 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 299.99854 * 3 2 1 6 6 H 1.48502 * 109.47130 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47047 * 185.01192 * 9 7 2 11 11 C 1.46957 * 110.99814 * 295.17584 * 10 9 7 12 12 C 1.53047 * 109.36659 * 183.19176 * 11 10 9 13 13 N 1.46954 * 109.36426 * 301.59840 * 12 11 10 14 14 C 1.46901 * 111.00139 * 183.18795 * 13 12 11 15 15 C 1.50700 * 109.47158 * 170.00094 * 14 13 12 16 16 C 1.38282 * 119.93685 * 269.72870 * 15 14 13 17 17 C 1.38115 * 120.06493 * 179.72675 * 16 15 14 18 18 C 1.38816 * 119.93866 * 0.51934 * 17 16 15 19 19 N 1.40236 * 120.07037 * 179.72803 * 18 17 16 20 20 C 1.37104 * 126.47123 * 359.73464 * 19 18 17 21 21 C 1.34651 * 106.83382 * 179.84025 * 20 19 18 22 22 N 1.34129 * 108.19693 * 0.42877 * 21 20 19 23 23 C 1.30526 * 109.34824 * 359.72807 * 22 21 20 24 24 C 1.38818 * 119.86862 * 359.75338 * 18 17 16 25 25 C 1.38122 * 119.93411 * 359.97438 * 24 18 17 26 26 C 1.46957 * 110.87913 * 59.31890 * 13 12 11 27 27 C 1.46954 * 111.00459 * 58.97570 * 10 9 7 28 28 H 0.97004 * 119.99880 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47046 * 65.00664 * 9 7 2 30 30 H 1.09003 * 109.46791 * 305.00992 * 9 7 2 31 31 H 1.09002 * 109.49002 * 63.22179 * 11 10 9 32 32 H 1.09002 * 109.48813 * 303.15892 * 11 10 9 33 33 H 1.08997 * 109.49091 * 181.63109 * 12 11 10 34 34 H 1.09004 * 109.49321 * 61.56490 * 12 11 10 35 35 H 1.08999 * 109.46792 * 289.99553 * 14 13 12 36 36 H 1.09000 * 109.47111 * 50.00002 * 14 13 12 37 37 H 1.08001 * 119.96402 * 359.97438 * 16 15 14 38 38 H 1.08006 * 120.03408 * 180.29287 * 17 16 15 39 39 H 1.08003 * 126.58113 * 359.97438 * 20 19 18 40 40 H 1.08003 * 125.90202 * 180.11456 * 21 20 19 41 41 H 1.07994 * 125.71297 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.03439 * 179.97438 * 24 18 17 43 43 H 1.08008 * 119.96977 * 180.02562 * 25 24 18 44 44 H 1.09002 * 109.49002 * 60.64970 * 26 13 12 45 45 H 1.09002 * 109.48813 * 180.71256 * 26 13 12 46 46 H 1.09004 * 109.48633 * 296.78402 * 27 10 9 47 47 H 1.08997 * 109.48815 * 56.84430 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6130 0.1221 11 6 3.0789 -3.6872 -1.0540 12 6 3.9975 -4.9045 -0.9257 13 7 4.7854 -4.7924 0.3097 14 6 5.7353 -5.9063 0.4312 15 6 6.6865 -5.6336 1.5679 16 6 7.8706 -4.9600 1.3303 17 6 8.7416 -4.7037 2.3711 18 6 8.4326 -5.1324 3.6547 19 7 9.3176 -4.8786 4.7124 20 6 10.5209 -4.2267 4.6297 21 6 11.0369 -4.2011 5.8731 22 7 10.1812 -4.8272 6.6947 23 6 9.1476 -5.2375 6.0114 24 6 7.2458 -5.8133 3.8892 25 6 6.3759 -6.0618 2.8454 26 6 3.9074 -4.7182 1.4859 27 6 2.9888 -3.5008 1.3575 28 1 -0.4850 0.8401 -0.0004 29 1 0.6937 -2.5969 -0.9311 30 1 0.5584 -2.5188 0.8420 31 1 3.6820 -2.7813 -1.1153 32 1 2.4726 -3.7824 -1.9549 33 1 4.6693 -4.9451 -1.7830 34 1 3.3954 -5.8126 -0.8918 35 1 5.1898 -6.8292 0.6276 36 1 6.2978 -6.0070 -0.4970 37 1 8.1126 -4.6306 0.3306 38 1 9.6642 -4.1735 2.1858 39 1 10.9679 -3.8112 3.7386 40 1 11.9795 -3.7579 6.1587 41 1 8.2991 -5.7723 6.4118 42 1 7.0028 -6.1483 4.8867 43 1 5.4522 -6.5911 3.0273 44 1 3.3043 -5.6241 1.5472 45 1 4.5137 -4.6230 2.3867 46 1 3.5909 -2.5928 1.3237 47 1 2.3170 -3.4602 2.2149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:04 Heat of formation + Delta-G solvation = 109.130701 kcal Electronic energy + Delta-G solvation = -26922.066433 eV Core-core repulsion = 23298.975726 eV Total energy + Delta-G solvation = -3623.090707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.56989 -39.86390 -38.47702 -35.63924 -34.11469 -32.42305 -31.64527 -30.67306 -30.24761 -29.66868 -27.87607 -25.83194 -24.19177 -23.71597 -22.94386 -22.44481 -21.46696 -20.87336 -20.70401 -19.13047 -18.87491 -16.45465 -16.08505 -15.81188 -15.72928 -15.62013 -15.22518 -14.76406 -14.64817 -14.29060 -14.19563 -14.08160 -13.96249 -13.71952 -13.48245 -13.32663 -13.15903 -12.83391 -12.07536 -11.91439 -11.83877 -11.80692 -11.34396 -11.08711 -10.85056 -10.84446 -10.69931 -10.53655 -10.39116 -10.35142 -10.09491 -9.84058 -9.55930 -9.32592 -8.99521 -8.50214 -8.44927 -8.13791 -7.19928 -6.04189 -4.13024 0.55148 1.00470 1.99687 2.37628 2.83394 3.25547 3.33944 3.38071 3.38818 4.18730 4.27556 4.32528 4.39874 4.43059 4.55054 4.62921 4.79280 5.02070 5.02621 5.08561 5.19457 5.26464 5.28399 5.34988 5.40797 5.50383 5.57480 5.58940 5.66852 5.78471 5.85349 5.91548 5.94883 6.09940 6.13125 6.24577 6.32705 6.37004 6.48104 6.57077 6.74066 6.83629 6.95734 7.16418 7.20645 7.33529 7.50874 7.69024 7.88591 8.02617 8.25722 8.28132 8.97836 9.54078 11.00944 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.002741 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.389985 B =10212.441341 C =11465.158790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.544 5.544 11 C 0.063 3.937 12 C 0.060 3.940 13 N -0.532 5.532 14 C 0.091 3.909 15 C -0.072 4.072 16 C -0.071 4.071 17 C -0.131 4.131 18 C 0.125 3.875 19 N -0.407 5.407 20 C -0.053 4.053 21 C -0.026 4.026 22 N -0.488 5.488 23 C 0.188 3.812 24 C -0.132 4.132 25 C -0.085 4.085 26 C 0.056 3.944 27 C 0.066 3.934 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.208 0.792 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 -14.234 4.446 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.268 5.268 11 C -0.066 4.066 12 C -0.068 4.068 13 N -0.257 5.257 14 C -0.037 4.037 15 C -0.073 4.073 16 C -0.090 4.090 17 C -0.150 4.150 18 C 0.032 3.968 19 N -0.086 5.086 20 C -0.184 4.184 21 C -0.172 4.172 22 N -0.205 5.205 23 C -0.094 4.094 24 C -0.151 4.151 25 C -0.104 4.104 26 C -0.072 4.072 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.194 0.806 40 H 0.191 0.809 41 H 0.224 0.776 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.739 -14.235 5.226 23.337 hybrid contribution 0.301 1.313 -0.831 1.583 sum 18.040 -12.922 4.395 22.621 Atomic orbital electron populations 1.69953 1.06023 1.26710 1.50362 1.24964 0.94749 0.99164 0.94940 0.86602 0.80209 0.83961 0.77652 1.19801 1.20957 1.20956 1.21796 0.93452 0.92000 1.51376 0.92276 1.19737 0.90860 0.85562 0.97740 1.62697 1.16958 1.46315 1.00851 1.21932 0.94177 0.95951 0.94534 1.22237 0.94879 0.98591 0.91053 1.62168 1.18373 1.41743 1.03377 1.21040 0.93491 0.92801 0.96330 1.19908 0.95084 0.97552 0.94757 1.20915 0.92887 0.96183 0.99038 1.20830 1.01233 1.02252 0.90731 1.17817 0.91020 1.01018 0.86935 1.43247 1.15641 1.41600 1.08067 1.22788 0.88439 1.05462 1.01669 1.22359 1.01164 1.04422 0.89264 1.70334 1.02669 1.14559 1.32951 1.25263 1.00792 1.03871 0.79425 1.20755 0.93037 1.00988 1.00337 1.20971 0.98777 0.99003 0.91653 1.22329 0.93727 0.98663 0.92474 1.21900 0.94809 0.95738 0.93883 0.92884 0.95486 0.94791 0.93439 0.91332 0.91218 0.94635 0.93900 0.89929 0.84798 0.85305 0.80570 0.80911 0.77551 0.85167 0.84994 0.94802 0.91116 0.93267 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.55 -14.91 7.66 -34.44 -0.26 -15.17 16 8 H 0.06 1.62 5.82 -52.49 -0.31 1.32 16 9 C 0.19 4.75 5.14 -4.98 -0.03 4.72 16 10 N -0.54 -11.43 4.92 -235.91 -1.16 -12.59 16 11 C 0.06 1.18 5.32 -3.77 -0.02 1.16 16 12 C 0.06 0.88 5.61 -3.77 -0.02 0.86 16 13 N -0.53 -7.47 4.70 -235.91 -1.11 -8.58 16 14 C 0.09 0.96 5.12 -4.98 -0.03 0.93 16 15 C -0.07 -0.73 4.90 -104.59 -0.51 -1.24 16 16 C -0.07 -0.68 9.69 -39.61 -0.38 -1.07 16 17 C -0.13 -1.22 9.47 -39.41 -0.37 -1.59 16 18 C 0.12 1.23 6.63 -83.58 -0.55 0.68 16 19 N -0.41 -4.13 2.99 -62.10 -0.19 -4.32 16 20 C -0.05 -0.49 10.86 -16.46 -0.18 -0.67 16 21 C -0.03 -0.26 11.85 -17.82 -0.21 -0.47 16 22 N -0.49 -5.86 11.25 -14.48 -0.16 -6.02 16 23 C 0.19 1.91 11.92 -89.63 -1.07 0.85 16 24 C -0.13 -1.18 9.47 -39.41 -0.37 -1.56 16 25 C -0.08 -0.79 7.91 -39.61 -0.31 -1.10 16 26 C 0.06 0.84 5.25 -3.77 -0.02 0.82 16 27 C 0.07 1.27 5.24 -3.77 -0.02 1.25 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.00 6.78 -51.93 -0.35 0.65 16 32 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 33 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.08 0.77 7.97 -51.93 -0.41 0.35 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 0.97 6.82 -52.48 -0.36 0.61 16 39 H 0.18 1.13 7.15 -52.48 -0.38 0.76 16 40 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 41 H 0.21 1.42 7.07 -52.49 -0.37 1.05 16 42 H 0.13 0.89 6.77 -52.49 -0.36 0.53 16 43 H 0.13 1.07 7.99 -52.48 -0.42 0.65 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.98 5.94 -51.93 -0.31 0.67 16 46 H 0.05 1.08 6.62 -51.93 -0.34 0.73 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -32.03 373.77 -12.68 -44.72 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.95 Total: 0.03 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -4.46 Total: -9.91 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -1.88 Total: -56.90 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.03 -12.68 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.848 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds