Wall clock time and date at job start Tue Mar 31 2020 14:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99997 * 2 1 4 4 H 1.48499 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 299.99854 * 3 2 1 6 6 H 1.48502 * 109.47130 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47047 * 185.01192 * 9 7 2 11 11 C 1.46957 * 110.99814 * 295.17584 * 10 9 7 12 12 C 1.53047 * 109.36659 * 183.19176 * 11 10 9 13 13 N 1.46954 * 109.36426 * 301.59840 * 12 11 10 14 14 C 1.46901 * 111.00139 * 183.18795 * 13 12 11 15 15 C 1.50700 * 109.47158 * 170.00094 * 14 13 12 16 16 C 1.38282 * 119.93685 * 269.72870 * 15 14 13 17 17 C 1.38115 * 120.06493 * 179.72675 * 16 15 14 18 18 C 1.38816 * 119.93866 * 0.51934 * 17 16 15 19 19 N 1.40236 * 120.07037 * 179.72803 * 18 17 16 20 20 C 1.37104 * 126.47123 * 359.73464 * 19 18 17 21 21 C 1.34651 * 106.83382 * 179.84025 * 20 19 18 22 22 N 1.34129 * 108.19693 * 0.42877 * 21 20 19 23 23 C 1.30526 * 109.34824 * 359.72807 * 22 21 20 24 24 C 1.38818 * 119.86862 * 359.75338 * 18 17 16 25 25 C 1.38122 * 119.93411 * 359.97438 * 24 18 17 26 26 C 1.46957 * 110.87913 * 59.31890 * 13 12 11 27 27 C 1.46954 * 111.00459 * 58.97570 * 10 9 7 28 28 H 0.97004 * 119.99880 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47046 * 65.00664 * 9 7 2 30 30 H 1.09003 * 109.46791 * 305.00992 * 9 7 2 31 31 H 1.09002 * 109.49002 * 63.22179 * 11 10 9 32 32 H 1.09002 * 109.48813 * 303.15892 * 11 10 9 33 33 H 1.08997 * 109.49091 * 181.63109 * 12 11 10 34 34 H 1.09004 * 109.49321 * 61.56490 * 12 11 10 35 35 H 1.08999 * 109.46792 * 289.99553 * 14 13 12 36 36 H 1.09000 * 109.47111 * 50.00002 * 14 13 12 37 37 H 1.08001 * 119.96402 * 359.97438 * 16 15 14 38 38 H 1.08006 * 120.03408 * 180.29287 * 17 16 15 39 39 H 1.08003 * 126.58113 * 359.97438 * 20 19 18 40 40 H 1.08003 * 125.90202 * 180.11456 * 21 20 19 41 41 H 1.07994 * 125.71297 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.03439 * 179.97438 * 24 18 17 43 43 H 1.08008 * 119.96977 * 180.02562 * 25 24 18 44 44 H 1.09002 * 109.49002 * 60.64970 * 26 13 12 45 45 H 1.09002 * 109.48813 * 180.71256 * 26 13 12 46 46 H 1.09004 * 109.48633 * 296.78402 * 27 10 9 47 47 H 1.08997 * 109.48815 * 56.84430 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6130 0.1221 11 6 3.0789 -3.6872 -1.0540 12 6 3.9975 -4.9045 -0.9257 13 7 4.7854 -4.7924 0.3097 14 6 5.7353 -5.9063 0.4312 15 6 6.6865 -5.6336 1.5679 16 6 7.8706 -4.9600 1.3303 17 6 8.7416 -4.7037 2.3711 18 6 8.4326 -5.1324 3.6547 19 7 9.3176 -4.8786 4.7124 20 6 10.5209 -4.2267 4.6297 21 6 11.0369 -4.2011 5.8731 22 7 10.1812 -4.8272 6.6947 23 6 9.1476 -5.2375 6.0114 24 6 7.2458 -5.8133 3.8892 25 6 6.3759 -6.0618 2.8454 26 6 3.9074 -4.7182 1.4859 27 6 2.9888 -3.5008 1.3575 28 1 -0.4850 0.8401 -0.0004 29 1 0.6937 -2.5969 -0.9311 30 1 0.5584 -2.5188 0.8420 31 1 3.6820 -2.7813 -1.1153 32 1 2.4726 -3.7824 -1.9549 33 1 4.6693 -4.9451 -1.7830 34 1 3.3954 -5.8126 -0.8918 35 1 5.1898 -6.8292 0.6276 36 1 6.2978 -6.0070 -0.4970 37 1 8.1126 -4.6306 0.3306 38 1 9.6642 -4.1735 2.1858 39 1 10.9679 -3.8112 3.7386 40 1 11.9795 -3.7579 6.1587 41 1 8.2991 -5.7723 6.4118 42 1 7.0028 -6.1483 4.8867 43 1 5.4522 -6.5911 3.0273 44 1 3.3043 -5.6241 1.5472 45 1 4.5137 -4.6230 2.3867 46 1 3.5909 -2.5928 1.3237 47 1 2.3170 -3.4602 2.2149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:04 Heat of formation + Delta-G solvation = 90.163090 kcal Electronic energy + Delta-G solvation = -26922.888930 eV Core-core repulsion = 23298.975726 eV Total energy + Delta-G solvation = -3623.913204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28128 -40.73081 -39.67905 -36.94888 -35.17325 -34.30664 -32.33423 -31.82046 -31.44749 -30.40299 -29.34518 -27.32399 -25.50523 -24.65833 -24.05389 -23.61280 -22.85824 -21.59348 -21.44024 -20.62909 -19.56352 -18.47293 -17.25756 -16.76884 -16.52428 -16.47233 -16.38287 -15.96082 -15.83377 -15.66191 -15.40923 -15.03329 -14.90095 -14.78824 -14.66708 -14.36459 -14.06754 -13.88600 -13.58160 -13.43379 -13.09869 -12.96091 -12.77942 -12.61410 -12.25265 -12.18566 -12.09194 -11.94176 -11.78084 -11.68038 -11.52785 -11.30168 -11.14565 -10.62712 -10.00537 -9.71731 -9.33058 -9.14138 -8.99272 -8.17033 -6.36290 -0.15795 0.33868 1.28714 1.33720 1.35500 1.47139 1.69190 2.08780 2.35591 2.64220 3.07610 3.19359 3.39519 3.61899 3.69994 3.78936 3.79846 3.98033 4.07343 4.11584 4.28326 4.34857 4.37673 4.46839 4.50133 4.54357 4.60700 4.67821 4.70461 4.75126 4.82564 4.90263 4.92544 5.01669 5.09572 5.13848 5.23501 5.24929 5.27247 5.32703 5.43943 5.60677 5.69429 5.72505 5.79633 6.02012 6.10822 6.12650 6.26526 6.30643 6.53325 6.84993 6.96613 7.35142 8.85417 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.002741 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.389985 B =10212.441341 C =11465.158790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.552 4.552 8 H 0.054 0.946 9 C 0.199 3.801 10 N -0.542 5.542 11 C 0.062 3.938 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.095 3.905 15 C -0.084 4.084 16 C -0.078 4.078 17 C -0.136 4.136 18 C 0.112 3.888 19 N -0.412 5.412 20 C -0.056 4.056 21 C -0.045 4.045 22 N -0.524 5.524 23 C 0.179 3.821 24 C -0.135 4.135 25 C -0.090 4.090 26 C 0.071 3.929 27 C 0.067 3.933 28 H 0.265 0.735 29 H 0.004 0.996 30 H 0.005 0.995 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.202 0.798 40 H 0.191 0.809 41 H 0.232 0.768 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.019 0.981 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.688 -15.082 4.178 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.072 0.928 9 C 0.072 3.928 10 N -0.266 5.266 11 C -0.066 4.066 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.031 4.031 15 C -0.085 4.085 16 C -0.097 4.097 17 C -0.156 4.156 18 C 0.020 3.980 19 N -0.090 5.090 20 C -0.186 4.186 21 C -0.190 4.190 22 N -0.241 5.241 23 C -0.102 4.102 24 C -0.154 4.154 25 C -0.108 4.108 26 C -0.057 4.057 27 C -0.062 4.062 28 H 0.074 0.926 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.219 0.781 40 H 0.208 0.792 41 H 0.248 0.752 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.037 0.963 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.612 -15.103 4.953 25.244 hybrid contribution -0.257 1.543 -0.738 1.730 sum 19.355 -13.559 4.215 24.005 Atomic orbital electron populations 1.70066 1.07502 1.27785 1.51286 1.25797 0.95595 1.02771 0.94606 0.85542 0.78876 0.79577 0.77908 1.19398 1.20159 1.20396 1.21976 0.93251 0.92945 1.50900 0.92772 1.19395 0.91279 0.86868 0.95209 1.62635 1.17534 1.43790 1.02623 1.21991 0.94104 0.97170 0.93379 1.22109 0.94739 0.96224 0.92534 1.62104 1.18312 1.44149 1.02486 1.21081 0.92774 0.91753 0.97503 1.19972 0.95301 0.98242 0.94953 1.21094 0.92872 0.96077 0.99639 1.21044 1.01839 1.02166 0.90526 1.18034 0.91403 1.01500 0.87104 1.43364 1.15907 1.41605 1.08127 1.23250 0.88142 1.04860 1.02352 1.22780 1.01893 1.04746 0.89601 1.70313 1.03803 1.15823 1.34194 1.25786 1.01135 1.03719 0.79559 1.21014 0.92633 1.00466 1.01297 1.21156 0.99291 0.98944 0.91458 1.22119 0.93347 0.96443 0.93772 1.21909 0.94733 0.96928 0.92634 0.92600 0.97773 0.97640 0.96136 0.91656 0.88464 0.93754 0.92650 0.88223 0.83802 0.83866 0.78114 0.79197 0.75200 0.83336 0.83765 0.93826 0.89599 0.96276 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.55 -30.87 7.66 25.60 0.20 -30.67 16 8 H 0.05 3.04 5.82 -2.91 -0.02 3.02 16 9 C 0.20 10.57 5.14 85.56 0.44 11.01 16 10 N -0.54 -23.17 4.92 -900.30 -4.43 -27.59 16 11 C 0.06 2.33 5.32 86.31 0.46 2.79 16 12 C 0.07 1.92 5.61 86.31 0.48 2.40 16 13 N -0.55 -13.95 4.70 -900.30 -4.23 -18.18 16 14 C 0.10 1.69 5.12 85.56 0.44 2.12 16 15 C -0.08 -1.45 4.90 -19.84 -0.10 -1.55 16 16 C -0.08 -1.30 9.69 22.25 0.22 -1.08 16 17 C -0.14 -2.23 9.47 22.38 0.21 -2.02 16 18 C 0.11 1.98 6.63 38.07 0.25 2.23 16 19 N -0.41 -7.68 2.99 -350.39 -1.05 -8.73 16 20 C -0.06 -0.95 10.86 83.05 0.90 -0.05 16 21 C -0.04 -0.87 11.85 83.52 0.99 0.12 16 22 N -0.52 -12.22 11.25 -199.71 -2.25 -14.47 16 23 C 0.18 3.43 11.92 180.00 2.14 5.58 16 24 C -0.13 -2.10 9.47 22.38 0.21 -1.89 16 25 C -0.09 -1.42 7.91 22.25 0.18 -1.24 16 26 C 0.07 2.01 5.25 86.31 0.45 2.46 16 27 C 0.07 2.60 5.24 86.31 0.45 3.05 16 28 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.00 0.24 8.12 -2.39 -0.02 0.22 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.02 0.87 6.78 -2.39 -0.02 0.85 16 32 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 33 H 0.10 2.10 8.07 -2.39 -0.02 2.09 16 34 H 0.04 1.13 8.14 -2.38 -0.02 1.12 16 35 H 0.06 0.88 8.06 -2.39 -0.02 0.86 16 36 H 0.10 1.45 7.97 -2.39 -0.02 1.43 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.14 1.81 6.82 -2.91 -0.02 1.79 16 39 H 0.20 2.14 7.15 -2.91 -0.02 2.11 16 40 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.23 2.80 7.07 -2.91 -0.02 2.78 16 42 H 0.15 1.65 6.77 -2.91 -0.02 1.63 16 43 H 0.14 1.88 7.99 -2.91 -0.02 1.85 16 44 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 2.18 5.94 -2.39 -0.01 2.17 16 46 H 0.02 0.85 6.62 -2.38 -0.02 0.83 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -70.60 373.77 -0.29 -70.89 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.96 Total: 12.41 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 8.39 Total: -5.63 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -11.67 Total: -124.10 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.60 -0.29 -70.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.049 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds