Wall clock time and date at job start Tue Mar 31 2020 14:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00240 * 2 1 4 4 H 1.48500 * 109.46952 * 269.99783 * 3 2 1 5 5 H 1.48493 * 109.46930 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47130 * 150.00002 * 3 2 1 7 7 C 1.37879 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99593 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.46951 * 111.00019 * 169.99803 * 10 9 7 12 12 C 1.53057 * 109.36414 * 183.19207 * 11 10 9 13 13 N 1.46961 * 109.36362 * 301.59706 * 12 11 10 14 14 C 1.46898 * 110.99920 * 183.18789 * 13 12 11 15 15 C 1.50705 * 109.46866 * 170.00500 * 14 13 12 16 16 C 1.39922 * 125.87910 * 95.00029 * 15 14 13 17 17 C 1.35322 * 107.92969 * 180.02562 * 16 15 14 18 18 N 1.35224 * 107.71375 * 359.97438 * 17 16 15 19 19 C 1.40180 * 126.05414 * 180.02562 * 18 17 16 20 20 C 1.38835 * 120.06647 * 179.97438 * 19 18 17 21 21 C 1.38125 * 119.93500 * 179.97438 * 20 19 18 22 22 C 1.38282 * 120.06295 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13445 * 0.02562 * 22 21 20 24 24 C 1.38125 * 120.06809 * 359.97438 * 23 22 21 25 25 N 1.30871 * 125.87522 * 275.33100 * 15 14 13 26 26 C 1.46967 * 110.87711 * 59.32199 * 13 12 11 27 27 C 1.46961 * 111.00192 * 293.80389 * 10 9 7 28 28 H 0.97009 * 119.99643 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47388 * 59.99781 * 9 7 2 30 30 H 1.08999 * 109.47218 * 299.99615 * 9 7 2 31 31 H 1.08999 * 109.49114 * 63.22644 * 11 10 9 32 32 H 1.08997 * 109.49203 * 303.15642 * 11 10 9 33 33 H 1.09001 * 109.48636 * 181.63515 * 12 11 10 34 34 H 1.08994 * 109.49027 * 61.56659 * 12 11 10 35 35 H 1.08991 * 109.46918 * 50.00295 * 14 13 12 36 36 H 1.08995 * 109.47093 * 290.00056 * 14 13 12 37 37 H 1.07998 * 126.03488 * 0.03476 * 16 15 14 38 38 H 1.07993 * 126.14068 * 180.02562 * 17 16 15 39 39 H 1.08005 * 120.03715 * 0.02562 * 20 19 18 40 40 H 1.07992 * 119.96658 * 179.72297 * 21 20 19 41 41 H 1.07995 * 119.93573 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.96916 * 180.02562 * 23 22 21 43 43 H 1.07993 * 120.03296 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.48489 * 60.64415 * 26 13 12 45 45 H 1.08997 * 109.48655 * 180.70870 * 26 13 12 46 46 H 1.08997 * 109.48103 * 296.77375 * 27 10 9 47 47 H 1.09000 * 109.49067 * 56.81671 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 1.5207 -4.8940 0.2388 12 6 2.5562 -6.0188 0.3105 13 7 3.3192 -6.0594 -0.9448 14 6 4.2738 -7.1760 -0.9447 15 6 4.8579 -7.3376 -2.3245 16 6 6.0639 -6.7887 -2.7739 17 6 6.2359 -7.1605 -4.0637 18 7 5.1744 -7.9196 -4.4180 19 6 4.9623 -8.5069 -5.6731 20 6 3.8231 -9.2666 -5.9020 21 6 3.6166 -9.8435 -7.1399 22 6 4.5430 -9.6646 -8.1508 23 6 5.6787 -8.9085 -7.9258 24 6 5.8907 -8.3290 -6.6900 25 7 4.3213 -8.0104 -3.3105 26 6 4.0040 -4.7811 -1.1830 27 6 2.9686 -3.6563 -1.2547 28 1 -0.4850 0.8402 0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 0.8251 -5.0915 -0.5768 32 1 0.9731 -4.8433 1.1799 33 1 2.0482 -6.9718 0.4583 34 1 3.2352 -5.8354 1.1431 35 1 3.7597 -8.0933 -0.6580 36 1 5.0736 -6.9702 -0.2335 37 1 6.7386 -6.1766 -2.1938 38 1 7.0712 -6.8988 -4.6960 39 1 3.0985 -9.4057 -5.1132 40 1 2.7328 -10.4383 -7.3172 41 1 4.3797 -10.1170 -9.1177 42 1 6.4002 -8.7701 -8.7173 43 1 6.7776 -7.7383 -6.5150 44 1 4.6995 -4.5837 -0.3673 45 1 4.5517 -4.8318 -2.1241 46 1 2.2894 -3.8398 -2.0873 47 1 3.4762 -2.7032 -1.4027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:48 Heat of formation + Delta-G solvation = 127.382193 kcal Electronic energy + Delta-G solvation = -26640.223720 eV Core-core repulsion = 23017.924457 eV Total energy + Delta-G solvation = -3622.299262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72967 -39.34180 -38.57818 -35.37105 -33.65739 -32.40880 -31.57195 -30.46615 -30.41520 -29.61961 -28.18716 -26.19267 -24.11076 -23.53747 -23.07562 -22.45863 -21.33356 -20.85189 -19.66126 -19.08940 -18.52434 -16.51389 -16.28947 -16.02811 -15.46069 -15.22534 -15.14848 -14.71535 -14.50688 -14.29104 -14.15803 -13.92827 -13.65410 -13.56908 -13.54433 -13.29436 -12.90436 -12.44653 -12.04063 -12.00919 -11.92911 -11.64527 -11.51207 -11.15876 -10.84158 -10.77024 -10.67356 -10.57434 -10.44522 -10.31790 -10.18805 -9.69380 -9.40708 -9.25352 -9.13937 -8.41526 -8.27274 -8.07694 -7.18086 -5.99756 -4.00991 0.55712 0.94731 1.97283 2.18139 2.55510 3.33317 3.39312 3.43569 3.44355 4.14714 4.22558 4.42521 4.44749 4.54508 4.58435 4.74896 4.94574 4.98320 5.01931 5.11802 5.26834 5.35245 5.36387 5.38964 5.51447 5.56938 5.60765 5.61777 5.77875 5.83646 5.89187 5.95273 5.96170 6.03471 6.10696 6.13558 6.24874 6.37144 6.47705 6.48946 6.64676 6.74577 6.97258 7.21693 7.23895 7.39393 7.42514 7.55067 7.83393 8.12997 8.25135 8.59365 9.06560 9.62977 11.11158 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002366 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.439693 B =11831.229862 C =12405.548853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.063 3.937 13 N -0.533 5.533 14 C 0.133 3.867 15 C 0.100 3.900 16 C -0.250 4.250 17 C 0.049 3.951 18 N -0.328 5.328 19 C 0.168 3.832 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.135 4.135 23 C -0.093 4.093 24 C -0.146 4.146 25 N -0.269 5.269 26 C 0.058 3.942 27 C 0.069 3.931 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.153 0.847 38 H 0.176 0.824 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 -21.006 -12.379 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.259 5.259 14 C 0.003 3.997 15 C -0.068 4.068 16 C -0.278 4.278 17 C -0.093 4.093 18 N -0.104 5.104 19 C 0.076 3.924 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.154 4.154 23 C -0.112 4.112 24 C -0.166 4.166 25 N -0.088 5.088 26 C -0.070 4.070 27 C -0.060 4.060 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.171 0.829 38 H 0.193 0.807 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.015 -21.603 -12.784 27.829 hybrid contribution 1.098 1.573 0.140 1.923 sum 13.113 -20.030 -12.644 27.074 Atomic orbital electron populations 1.69965 1.06058 1.26709 1.51096 1.24997 0.94862 0.99295 0.95526 0.86510 0.79806 0.83174 0.78001 1.20770 1.21274 1.19792 1.21156 0.93434 0.89969 1.49902 0.91938 1.19700 0.90068 0.87317 0.96090 1.62290 1.28110 1.02750 1.33199 1.22060 0.94749 0.89941 1.00506 1.22165 0.96064 0.98769 0.89469 1.62105 1.25361 1.03041 1.35383 1.20374 0.94748 0.96062 0.88492 1.22341 0.93363 0.95438 0.95698 1.21553 1.00893 1.09905 0.95498 1.22536 0.93328 0.96282 0.97104 1.45873 1.16562 1.38987 1.08932 1.17592 0.96428 0.96424 0.82002 1.20970 0.96690 0.97878 0.98567 1.21099 0.99321 0.98668 0.92229 1.21222 0.94681 0.99917 0.99564 1.20960 0.97695 0.96585 0.95950 1.20814 0.99564 1.03429 0.92837 1.77456 1.14421 1.24301 0.92669 1.22294 0.96097 0.88323 1.00267 1.21971 0.95448 0.97366 0.91230 0.92960 0.99132 0.95204 0.95143 0.90909 0.91021 0.94049 0.89398 0.92529 0.82893 0.80720 0.84362 0.85098 0.85511 0.85101 0.85306 0.94178 0.91058 0.95520 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.40 8.47 -34.44 -0.29 -14.69 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.17 4.72 -4.97 -0.02 5.15 16 10 N -0.54 -11.99 4.70 -235.91 -1.11 -13.10 16 11 C 0.06 1.07 5.61 -3.77 -0.02 1.04 16 12 C 0.06 0.97 5.61 -3.76 -0.02 0.95 16 13 N -0.53 -8.30 4.70 -235.90 -1.11 -9.41 16 14 C 0.13 1.70 5.52 -4.97 -0.03 1.67 16 15 C 0.10 1.35 5.94 -82.37 -0.49 0.86 16 16 C -0.25 -2.87 9.67 -39.99 -0.39 -3.26 16 17 C 0.05 0.52 10.80 -17.10 -0.18 0.33 16 18 N -0.33 -4.16 3.80 -10.70 -0.04 -4.20 16 19 C 0.17 1.88 6.69 -83.60 -0.56 1.32 16 20 C -0.12 -1.29 9.66 -39.40 -0.38 -1.67 16 21 C -0.09 -0.77 10.04 -39.61 -0.40 -1.17 16 22 C -0.14 -0.94 10.04 -39.55 -0.40 -1.34 16 23 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 24 C -0.15 -1.23 9.46 -39.40 -0.37 -1.61 16 25 N -0.27 -3.96 11.87 33.69 0.40 -3.56 16 26 C 0.06 0.96 5.41 -3.76 -0.02 0.94 16 27 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 30 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.18 1.18 7.04 -52.49 -0.37 0.81 16 39 H 0.14 1.59 7.70 -52.48 -0.40 1.18 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.82 6.74 -52.49 -0.35 0.47 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.13 6.38 -51.93 -0.33 0.79 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.86 6.79 -51.93 -0.35 1.50 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -33.32 381.10 -11.71 -45.03 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.22 Total: -1.29 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -4.09 Total: -9.66 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -1.12 Total: -56.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.32 -11.71 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.411 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds