Wall clock time and date at job start Tue Mar 31 2020 14:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00240 * 2 1 4 4 H 1.48500 * 109.46952 * 269.99783 * 3 2 1 5 5 H 1.48493 * 109.46930 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47130 * 150.00002 * 3 2 1 7 7 C 1.37879 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99593 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.46951 * 111.00019 * 169.99803 * 10 9 7 12 12 C 1.53057 * 109.36414 * 183.19207 * 11 10 9 13 13 N 1.46961 * 109.36362 * 301.59706 * 12 11 10 14 14 C 1.46898 * 110.99920 * 183.18789 * 13 12 11 15 15 C 1.50705 * 109.46866 * 170.00500 * 14 13 12 16 16 C 1.39922 * 125.87910 * 95.00029 * 15 14 13 17 17 C 1.35322 * 107.92969 * 180.02562 * 16 15 14 18 18 N 1.35224 * 107.71375 * 359.97438 * 17 16 15 19 19 C 1.40180 * 126.05414 * 180.02562 * 18 17 16 20 20 C 1.38835 * 120.06647 * 179.97438 * 19 18 17 21 21 C 1.38125 * 119.93500 * 179.97438 * 20 19 18 22 22 C 1.38282 * 120.06295 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13445 * 0.02562 * 22 21 20 24 24 C 1.38125 * 120.06809 * 359.97438 * 23 22 21 25 25 N 1.30871 * 125.87522 * 275.33100 * 15 14 13 26 26 C 1.46967 * 110.87711 * 59.32199 * 13 12 11 27 27 C 1.46961 * 111.00192 * 293.80389 * 10 9 7 28 28 H 0.97009 * 119.99643 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47388 * 59.99781 * 9 7 2 30 30 H 1.08999 * 109.47218 * 299.99615 * 9 7 2 31 31 H 1.08999 * 109.49114 * 63.22644 * 11 10 9 32 32 H 1.08997 * 109.49203 * 303.15642 * 11 10 9 33 33 H 1.09001 * 109.48636 * 181.63515 * 12 11 10 34 34 H 1.08994 * 109.49027 * 61.56659 * 12 11 10 35 35 H 1.08991 * 109.46918 * 50.00295 * 14 13 12 36 36 H 1.08995 * 109.47093 * 290.00056 * 14 13 12 37 37 H 1.07998 * 126.03488 * 0.03476 * 16 15 14 38 38 H 1.07993 * 126.14068 * 180.02562 * 17 16 15 39 39 H 1.08005 * 120.03715 * 0.02562 * 20 19 18 40 40 H 1.07992 * 119.96658 * 179.72297 * 21 20 19 41 41 H 1.07995 * 119.93573 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.96916 * 180.02562 * 23 22 21 43 43 H 1.07993 * 120.03296 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.48489 * 60.64415 * 26 13 12 45 45 H 1.08997 * 109.48655 * 180.70870 * 26 13 12 46 46 H 1.08997 * 109.48103 * 296.77375 * 27 10 9 47 47 H 1.09000 * 109.49067 * 56.81671 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 1.5207 -4.8940 0.2388 12 6 2.5562 -6.0188 0.3105 13 7 3.3192 -6.0594 -0.9448 14 6 4.2738 -7.1760 -0.9447 15 6 4.8579 -7.3376 -2.3245 16 6 6.0639 -6.7887 -2.7739 17 6 6.2359 -7.1605 -4.0637 18 7 5.1744 -7.9196 -4.4180 19 6 4.9623 -8.5069 -5.6731 20 6 3.8231 -9.2666 -5.9020 21 6 3.6166 -9.8435 -7.1399 22 6 4.5430 -9.6646 -8.1508 23 6 5.6787 -8.9085 -7.9258 24 6 5.8907 -8.3290 -6.6900 25 7 4.3213 -8.0104 -3.3105 26 6 4.0040 -4.7811 -1.1830 27 6 2.9686 -3.6563 -1.2547 28 1 -0.4850 0.8402 0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 0.8251 -5.0915 -0.5768 32 1 0.9731 -4.8433 1.1799 33 1 2.0482 -6.9718 0.4583 34 1 3.2352 -5.8354 1.1431 35 1 3.7597 -8.0933 -0.6580 36 1 5.0736 -6.9702 -0.2335 37 1 6.7386 -6.1766 -2.1938 38 1 7.0712 -6.8988 -4.6960 39 1 3.0985 -9.4057 -5.1132 40 1 2.7328 -10.4383 -7.3172 41 1 4.3797 -10.1170 -9.1177 42 1 6.4002 -8.7701 -8.7173 43 1 6.7776 -7.7383 -6.5150 44 1 4.6995 -4.5837 -0.3673 45 1 4.5517 -4.8318 -2.1241 46 1 2.2894 -3.8398 -2.0873 47 1 3.4762 -2.7032 -1.4027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:47 Heat of formation + Delta-G solvation = 105.709272 kcal Electronic energy + Delta-G solvation = -26641.163528 eV Core-core repulsion = 23017.924457 eV Total energy + Delta-G solvation = -3623.239071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57320 -40.24715 -39.77950 -36.87677 -34.88250 -34.19212 -32.22980 -31.87634 -31.37790 -30.66989 -29.57433 -27.75576 -25.58832 -24.64877 -24.09580 -23.49651 -23.02402 -21.63894 -20.67186 -20.50362 -19.24900 -18.49611 -17.37529 -17.12172 -16.58033 -16.37617 -16.04282 -15.92463 -15.84392 -15.72015 -15.39858 -15.16080 -14.96103 -14.66369 -14.37919 -14.34805 -14.11516 -13.69045 -13.60156 -13.23886 -13.16411 -12.89641 -12.67928 -12.57433 -12.45069 -12.26147 -12.12779 -12.11909 -11.94459 -11.60942 -11.46255 -11.26539 -11.08461 -10.63057 -10.10988 -10.02319 -9.34743 -9.07079 -8.98390 -8.21348 -6.32074 -0.14592 0.32929 1.19006 1.40488 1.40519 1.42477 1.54241 1.66299 2.39846 2.80260 3.05024 3.10738 3.28586 3.37494 3.73596 3.86011 3.96378 3.98337 4.14419 4.19808 4.22248 4.23563 4.37859 4.42641 4.46044 4.48975 4.59459 4.61593 4.67819 4.74946 4.78224 4.86598 4.96029 4.96788 5.01171 5.02420 5.05734 5.20279 5.25940 5.29676 5.38116 5.50118 5.61230 5.62844 5.81229 5.98897 6.04373 6.07266 6.23599 6.32070 6.60169 6.66421 6.83574 7.37645 8.90163 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002366 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.439693 B =11831.229862 C =12405.548853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.053 3.947 12 C 0.074 3.926 13 N -0.549 5.549 14 C 0.138 3.862 15 C 0.084 3.916 16 C -0.263 4.263 17 C 0.052 3.948 18 N -0.334 5.334 19 C 0.134 3.866 20 C -0.146 4.146 21 C -0.101 4.101 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.146 4.146 25 N -0.312 5.312 26 C 0.076 3.924 27 C 0.071 3.929 28 H 0.265 0.735 29 H -0.046 1.046 30 H 0.006 0.994 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.213 0.787 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.002 0.998 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.165 -21.504 -13.710 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.075 4.075 12 C -0.054 4.054 13 N -0.275 5.275 14 C 0.009 3.991 15 C -0.083 4.083 16 C -0.291 4.291 17 C -0.089 4.089 18 N -0.110 5.110 19 C 0.042 3.958 20 C -0.166 4.166 21 C -0.119 4.119 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.167 4.167 25 N -0.133 5.133 26 C -0.052 4.052 27 C -0.057 4.057 28 H 0.073 0.927 29 H -0.028 1.028 30 H 0.024 0.976 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.190 0.810 38 H 0.230 0.770 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.021 0.979 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.034 -22.139 -14.118 30.257 hybrid contribution 0.116 1.615 0.419 1.673 sum 15.150 -20.524 -13.699 28.955 Atomic orbital electron populations 1.70104 1.07863 1.27944 1.51750 1.25981 0.95785 1.03411 0.94736 0.85332 0.78615 0.77951 0.78421 1.19857 1.20668 1.18592 1.21444 0.93640 0.90902 1.50099 0.91705 1.19365 0.90125 0.89171 0.93173 1.62250 1.27147 1.03045 1.34003 1.22185 0.95770 0.89648 0.99938 1.22081 0.95348 0.98192 0.89761 1.62017 1.26563 1.03296 1.35653 1.20406 0.94765 0.94950 0.88966 1.22536 0.94261 0.95839 0.95703 1.21834 1.00688 1.10481 0.96145 1.23194 0.93457 0.94859 0.97393 1.46048 1.16724 1.39228 1.08970 1.17998 0.97692 0.97796 0.82322 1.20997 0.96872 0.99500 0.99274 1.21356 1.00413 0.98511 0.91622 1.21634 0.93999 0.99057 1.00228 1.21416 0.98110 0.95335 0.96055 1.21148 0.99552 1.03373 0.92582 1.77372 1.16216 1.25818 0.93860 1.22052 0.94559 0.87404 1.01205 1.21947 0.95618 0.98590 0.89562 0.92671 1.02807 0.97585 0.96837 0.90547 0.88303 0.93043 0.88620 0.90399 0.81010 0.77006 0.86630 0.83499 0.82591 0.81855 0.83160 0.93244 0.90045 0.97929 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.52 -30.52 8.47 25.60 0.22 -30.30 16 8 H 0.06 3.68 7.13 -2.91 -0.02 3.66 16 9 C 0.21 11.70 4.72 85.56 0.40 12.11 16 10 N -0.54 -24.81 4.70 -900.27 -4.23 -29.04 16 11 C 0.05 2.05 5.61 86.31 0.48 2.54 16 12 C 0.07 2.18 5.61 86.31 0.48 2.67 16 13 N -0.55 -16.66 4.70 -900.26 -4.23 -20.89 16 14 C 0.14 3.32 5.52 85.56 0.47 3.79 16 15 C 0.08 2.21 5.94 43.11 0.26 2.47 16 16 C -0.26 -5.62 9.67 22.00 0.21 -5.40 16 17 C 0.05 1.02 10.80 83.50 0.90 1.93 16 18 N -0.33 -8.39 3.80 -187.77 -0.71 -9.10 16 19 C 0.13 2.94 6.69 38.09 0.25 3.20 16 20 C -0.15 -3.23 9.66 22.39 0.22 -3.02 16 21 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 22 C -0.13 -1.48 10.04 22.29 0.22 -1.26 16 23 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16 24 C -0.15 -2.16 9.46 22.39 0.21 -1.95 16 25 N -0.31 -9.34 11.87 -47.33 -0.56 -9.91 16 26 C 0.08 2.47 5.41 86.31 0.47 2.93 16 27 C 0.07 3.03 5.43 86.31 0.47 3.50 16 28 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 29 H -0.05 -2.85 8.12 -2.38 -0.02 -2.87 16 30 H 0.01 0.36 8.03 -2.39 -0.02 0.34 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 33 H 0.10 2.41 8.07 -2.39 -0.02 2.40 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.10 2.13 8.03 -2.39 -0.02 2.12 16 36 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.21 2.18 7.04 -2.91 -0.02 2.16 16 39 H 0.12 2.95 7.70 -2.91 -0.02 2.93 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 42 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.15 1.43 6.74 -2.91 -0.02 1.41 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 2.50 6.38 -2.39 -0.02 2.48 16 46 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.07 3.13 6.79 -2.39 -0.02 3.11 16 Total: -1.00 -75.95 381.10 -0.30 -76.25 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.95 Total: 11.80 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 6.18 Total: -8.50 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -9.45 Total: -126.56 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.95 -0.30 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.958 kcal (2) G-P(sol) polarization free energy of solvation -75.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds