Wall clock time and date at job start Tue Mar 31 2020 14:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.50707 * 109.47033 * 179.97438 * 14 13 12 16 16 C 1.39916 * 125.87701 * 94.71607 * 15 14 13 17 17 C 1.35315 * 107.93086 * 179.88832 * 16 15 14 18 18 N 1.35229 * 107.71564 * 0.37345 * 17 16 15 19 19 C 1.40179 * 126.05629 * 179.76252 * 18 17 16 20 20 C 1.38838 * 120.06972 * 359.69829 * 19 18 17 21 21 C 1.38116 * 119.93338 * 179.74623 * 20 19 18 22 22 C 1.38283 * 120.06784 * 0.52769 * 21 20 19 23 23 C 1.38276 * 120.13298 * 359.74943 * 22 21 20 24 24 C 1.38124 * 120.06468 * 359.97438 * 23 22 21 25 25 N 1.30874 * 125.87450 * 275.02895 * 15 14 13 26 26 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 27 27 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 28 28 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 30 30 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 31 31 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 32 32 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 33 33 H 1.08996 * 109.46558 * 58.65144 * 12 11 10 34 34 H 1.00897 * 110.99834 * 81.04561 * 13 12 11 35 35 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 36 36 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 37 37 H 1.07998 * 126.03412 * 0.02562 * 16 15 14 38 38 H 1.08005 * 126.14471 * 180.13067 * 17 16 15 39 39 H 1.07998 * 120.02666 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.96506 * 180.29915 * 21 20 19 41 41 H 1.08001 * 119.93011 * 179.76667 * 22 21 20 42 42 H 1.07999 * 119.96636 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.03136 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.49452 * 181.32235 * 26 12 11 45 45 H 1.08996 * 109.50041 * 301.41419 * 26 12 11 46 46 H 1.09000 * 109.47297 * 113.74148 * 27 9 7 47 47 H 1.09005 * 109.70555 * 353.46012 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0326 -7.1891 4.5231 16 6 0.0011 -6.8930 5.8903 17 6 0.2952 -8.0262 6.5688 18 7 0.5139 -9.0044 5.6610 19 6 0.8519 -10.3345 5.9465 20 6 0.9964 -10.7481 7.2640 21 6 1.3243 -12.0606 7.5423 22 6 1.5194 -12.9598 6.5101 23 6 1.3819 -12.5495 5.1967 24 6 1.0485 -11.2397 4.9123 25 7 0.3428 -8.4529 4.3845 26 6 0.4931 -3.3254 2.4085 27 6 0.2252 -2.3429 1.2642 28 1 -0.4849 0.8401 0.0004 29 1 2.7375 -3.5126 -0.7655 30 1 1.0447 -4.0592 -0.8567 31 1 2.3025 -5.6087 0.5645 32 1 2.8993 -4.2592 1.5611 33 1 -0.0311 -5.0435 1.2191 34 1 1.5461 -5.2273 3.6770 35 1 -0.8756 -5.4122 3.7658 36 1 -0.7379 -6.7372 2.5852 37 1 -0.2210 -5.9306 6.3270 38 1 0.3498 -8.1299 7.6424 39 1 0.8488 -10.0450 8.0704 40 1 1.4321 -12.3840 8.5670 41 1 1.7795 -13.9847 6.7301 42 1 1.5353 -13.2540 4.3926 43 1 0.9408 -10.9199 3.8864 44 1 -0.3890 -3.3914 3.0454 45 1 1.3417 -2.9761 2.9967 46 1 -0.6770 -2.6412 0.7300 47 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611346286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:59 Heat of formation + Delta-G solvation = 131.917339 kcal Electronic energy + Delta-G solvation = -26269.792830 eV Core-core repulsion = 22647.690226 eV Total energy + Delta-G solvation = -3622.102604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74141 -39.32817 -38.06470 -35.39059 -33.75931 -32.13434 -31.60943 -30.49221 -29.94819 -29.69790 -28.72731 -25.99909 -24.17923 -23.53813 -22.69752 -22.04123 -21.30361 -20.92378 -19.93040 -19.06184 -18.55364 -16.83252 -16.54845 -15.61286 -15.54324 -15.26977 -14.89272 -14.72839 -14.48564 -14.08011 -13.83515 -13.71329 -13.64376 -13.45337 -13.30738 -13.07755 -12.97579 -12.39424 -12.08887 -12.02646 -11.94313 -11.55262 -11.31685 -11.02746 -10.76437 -10.67662 -10.65130 -10.42110 -10.37039 -10.14692 -9.98831 -9.64503 -9.49446 -9.45197 -9.29989 -8.46818 -8.30554 -8.00905 -6.62294 -5.75772 -3.17505 0.51181 0.90306 1.93338 2.14019 2.53936 3.39122 3.39901 3.46020 3.48771 4.12237 4.34237 4.45247 4.52695 4.53856 4.61856 4.73652 4.92587 4.98213 5.11449 5.27189 5.35356 5.43736 5.46528 5.49175 5.56749 5.60277 5.65899 5.73178 5.78737 5.91688 5.97122 6.03852 6.06724 6.19953 6.33090 6.37527 6.44080 6.50600 6.59749 6.65041 6.72533 6.87620 6.93072 7.06226 7.35991 7.37499 7.49956 7.63154 7.70635 7.82911 8.48935 9.25118 9.88991 10.46154 11.32913 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.001934 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.895250 B =14472.932005 C =14832.708562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.117 4.117 12 C 0.097 3.903 13 N -0.681 5.681 14 C 0.137 3.863 15 C 0.095 3.905 16 C -0.251 4.251 17 C 0.048 3.952 18 N -0.329 5.329 19 C 0.168 3.832 20 C -0.146 4.146 21 C -0.093 4.093 22 C -0.135 4.135 23 C -0.094 4.094 24 C -0.121 4.121 25 N -0.268 5.268 26 C -0.168 4.168 27 C 0.175 3.825 28 H 0.253 0.747 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.339 0.661 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.017 0.983 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -23.382 16.672 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.157 4.157 12 C -0.012 4.012 13 N -0.312 5.312 14 C 0.006 3.994 15 C -0.073 4.073 16 C -0.280 4.280 17 C -0.094 4.094 18 N -0.104 5.104 19 C 0.075 3.925 20 C -0.167 4.167 21 C -0.112 4.112 22 C -0.154 4.154 23 C -0.113 4.113 24 C -0.141 4.141 25 N -0.088 5.088 26 C -0.209 4.209 27 C 0.048 3.952 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.193 0.807 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.017 -24.761 15.438 29.179 hybrid contribution -0.136 2.350 1.270 2.675 sum -0.118 -22.411 16.708 27.954 Atomic orbital electron populations 1.70033 1.05248 1.25394 1.54195 1.25040 0.95285 0.98380 1.01087 0.86318 0.79161 0.83725 0.77706 1.21412 1.21621 1.20527 1.19179 0.92501 0.84837 1.41398 0.91768 1.44053 1.35830 1.01628 1.50028 1.20926 0.97619 0.86738 0.92916 1.21976 0.96673 0.99048 0.97963 1.21532 0.98559 0.89591 0.91561 1.60690 1.18174 1.39244 1.13045 1.20280 0.92527 0.93422 0.93196 1.22502 0.97466 0.92305 0.95062 1.21574 1.13824 0.99776 0.92808 1.22542 1.01732 0.88339 0.96753 1.45911 1.52774 1.06743 1.04988 1.17598 0.99806 0.80891 0.94204 1.20812 1.04454 0.97485 0.93932 1.20959 0.98350 0.92177 0.99722 1.21227 1.01351 1.00077 0.92719 1.21106 0.98001 0.95120 0.97069 1.20983 1.00981 0.92768 0.99365 1.77492 1.22449 1.10297 0.98520 1.22868 1.00008 0.97453 1.00541 1.20687 0.88698 0.97953 0.87831 0.93716 0.92742 0.96540 0.92546 0.92537 0.91105 0.84283 0.92743 0.89580 0.82856 0.80730 0.85327 0.85103 0.85492 0.85063 0.84310 0.93613 0.92522 0.96498 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.20 55.49 0.62 -25.76 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.98 3.00 -172.29 -0.52 -15.50 16 10 C 0.14 3.11 6.51 -3.71 -0.02 3.08 16 11 C -0.12 -2.13 5.69 -26.61 -0.15 -2.28 16 12 C 0.10 1.64 2.43 -67.67 -0.16 1.48 16 13 N -0.68 -10.17 6.24 -107.94 -0.67 -10.84 16 14 C 0.14 1.82 6.04 -4.97 -0.03 1.79 16 15 C 0.10 1.27 6.73 -82.37 -0.55 0.72 16 16 C -0.25 -2.80 10.74 -40.00 -0.43 -3.23 16 17 C 0.05 0.48 10.80 -17.10 -0.18 0.30 16 18 N -0.33 -4.03 3.80 -10.70 -0.04 -4.07 16 19 C 0.17 1.78 6.69 -83.59 -0.56 1.22 16 20 C -0.15 -1.15 9.46 -39.40 -0.37 -1.52 16 21 C -0.09 -0.60 10.04 -39.61 -0.40 -0.99 16 22 C -0.14 -0.87 10.04 -39.55 -0.40 -1.26 16 23 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 24 C -0.12 -1.23 9.66 -39.40 -0.38 -1.61 16 25 N -0.27 -3.88 11.87 33.69 0.40 -3.48 16 26 C -0.17 -3.14 5.33 -26.61 -0.14 -3.28 16 27 C 0.17 4.16 5.30 -3.69 -0.02 4.14 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 34 H 0.34 4.96 8.47 -39.29 -0.33 4.62 16 35 H 0.05 0.68 7.41 -51.93 -0.38 0.29 16 36 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 37 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.18 1.08 7.04 -52.48 -0.37 0.71 16 39 H 0.13 0.74 6.74 -52.49 -0.35 0.39 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.14 1.54 7.70 -52.49 -0.40 1.13 16 44 H 0.05 0.77 7.42 -51.93 -0.39 0.38 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -32.03 380.79 -11.07 -43.10 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.13 Total: 3.71 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -4.43 Total: -9.70 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.21 Total: -59.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.03 -11.07 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611346286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.017 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds