Wall clock time and date at job start Tue Mar 31 2020 14:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.50707 * 109.47033 * 179.97438 * 14 13 12 16 16 C 1.39916 * 125.87701 * 94.71607 * 15 14 13 17 17 C 1.35315 * 107.93086 * 179.88832 * 16 15 14 18 18 N 1.35229 * 107.71564 * 0.37345 * 17 16 15 19 19 C 1.40179 * 126.05629 * 179.76252 * 18 17 16 20 20 C 1.38838 * 120.06972 * 359.69829 * 19 18 17 21 21 C 1.38116 * 119.93338 * 179.74623 * 20 19 18 22 22 C 1.38283 * 120.06784 * 0.52769 * 21 20 19 23 23 C 1.38276 * 120.13298 * 359.74943 * 22 21 20 24 24 C 1.38124 * 120.06468 * 359.97438 * 23 22 21 25 25 N 1.30874 * 125.87450 * 275.02895 * 15 14 13 26 26 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 27 27 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 28 28 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 30 30 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 31 31 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 32 32 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 33 33 H 1.08996 * 109.46558 * 58.65144 * 12 11 10 34 34 H 1.00897 * 110.99834 * 81.04561 * 13 12 11 35 35 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 36 36 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 37 37 H 1.07998 * 126.03412 * 0.02562 * 16 15 14 38 38 H 1.08005 * 126.14471 * 180.13067 * 17 16 15 39 39 H 1.07998 * 120.02666 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.96506 * 180.29915 * 21 20 19 41 41 H 1.08001 * 119.93011 * 179.76667 * 22 21 20 42 42 H 1.07999 * 119.96636 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.03136 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.49452 * 181.32235 * 26 12 11 45 45 H 1.08996 * 109.50041 * 301.41419 * 26 12 11 46 46 H 1.09000 * 109.47297 * 113.74148 * 27 9 7 47 47 H 1.09005 * 109.70555 * 353.46012 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0326 -7.1891 4.5231 16 6 0.0011 -6.8930 5.8903 17 6 0.2952 -8.0262 6.5688 18 7 0.5139 -9.0044 5.6610 19 6 0.8519 -10.3345 5.9465 20 6 0.9964 -10.7481 7.2640 21 6 1.3243 -12.0606 7.5423 22 6 1.5194 -12.9598 6.5101 23 6 1.3819 -12.5495 5.1967 24 6 1.0485 -11.2397 4.9123 25 7 0.3428 -8.4529 4.3845 26 6 0.4931 -3.3254 2.4085 27 6 0.2252 -2.3429 1.2642 28 1 -0.4849 0.8401 0.0004 29 1 2.7375 -3.5126 -0.7655 30 1 1.0447 -4.0592 -0.8567 31 1 2.3025 -5.6087 0.5645 32 1 2.8993 -4.2592 1.5611 33 1 -0.0311 -5.0435 1.2191 34 1 1.5461 -5.2273 3.6770 35 1 -0.8756 -5.4122 3.7658 36 1 -0.7379 -6.7372 2.5852 37 1 -0.2210 -5.9306 6.3270 38 1 0.3498 -8.1299 7.6424 39 1 0.8488 -10.0450 8.0704 40 1 1.4321 -12.3840 8.5670 41 1 1.7795 -13.9847 6.7301 42 1 1.5353 -13.2540 4.3926 43 1 0.9408 -10.9199 3.8864 44 1 -0.3890 -3.3914 3.0454 45 1 1.3417 -2.9761 2.9967 46 1 -0.6770 -2.6412 0.7300 47 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611346286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:58 Heat of formation + Delta-G solvation = 113.374688 kcal Electronic energy + Delta-G solvation = -26270.596900 eV Core-core repulsion = 22647.690226 eV Total energy + Delta-G solvation = -3622.906673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.56032 -39.98072 -39.58468 -36.85793 -34.86410 -33.74955 -32.22621 -31.74153 -31.43484 -30.93951 -29.78058 -27.38977 -25.81813 -24.18236 -23.77767 -23.43522 -22.92016 -21.65655 -21.10656 -20.44101 -19.25648 -18.75763 -17.11967 -16.93062 -16.59704 -16.51117 -15.90631 -15.83127 -15.56588 -15.38014 -15.31712 -14.85693 -14.78234 -14.65205 -14.38425 -14.28910 -13.99117 -13.74743 -13.58490 -13.13895 -13.02039 -12.83137 -12.57860 -12.56388 -12.39413 -12.18296 -12.08615 -11.97388 -11.78962 -11.59972 -11.39401 -11.30029 -11.06864 -10.55210 -10.13384 -10.01818 -9.34026 -9.01020 -8.66426 -7.86806 -5.32033 -0.15230 0.33556 1.18249 1.38548 1.46603 1.47742 1.57890 1.66104 2.51830 2.80688 3.22185 3.30678 3.41934 3.71451 3.75910 3.87114 3.96301 3.98946 4.10155 4.22709 4.24266 4.35685 4.43391 4.46956 4.52998 4.57256 4.60818 4.71559 4.72542 4.77724 4.88728 4.94755 4.97112 5.02988 5.06506 5.22093 5.25307 5.29606 5.38669 5.39044 5.50570 5.50926 5.59953 5.64872 5.73581 5.81402 6.06486 6.22962 6.40178 6.42992 6.65060 7.15854 7.87184 8.39275 9.19564 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.001934 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.895250 B =14472.932005 C =14832.708562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.104 4.104 12 C 0.109 3.891 13 N -0.678 5.678 14 C 0.141 3.859 15 C 0.080 3.920 16 C -0.265 4.265 17 C 0.055 3.945 18 N -0.333 5.333 19 C 0.133 3.867 20 C -0.145 4.145 21 C -0.091 4.091 22 C -0.130 4.130 23 C -0.100 4.100 24 C -0.146 4.146 25 N -0.311 5.311 26 C -0.150 4.150 27 C 0.180 3.820 28 H 0.250 0.750 29 H 0.054 0.946 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.344 0.656 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.173 0.827 38 H 0.216 0.784 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.053 0.947 46 H -0.004 1.004 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -25.196 19.509 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.144 4.144 12 C -0.001 4.001 13 N -0.308 5.308 14 C 0.010 3.990 15 C -0.088 4.088 16 C -0.293 4.293 17 C -0.087 4.087 18 N -0.108 5.108 19 C 0.041 3.959 20 C -0.165 4.165 21 C -0.109 4.109 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.166 4.166 25 N -0.132 5.132 26 C -0.191 4.191 27 C 0.054 3.946 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.190 0.810 38 H 0.232 0.768 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.165 0.835 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.014 0.986 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.968 -26.615 18.277 32.301 hybrid contribution -0.416 2.731 0.415 2.793 sum 0.552 -23.884 18.692 30.334 Atomic orbital electron populations 1.70187 1.06631 1.25813 1.55487 1.25804 0.96082 1.01490 1.01339 0.85284 0.78064 0.79559 0.77586 1.21138 1.21767 1.19618 1.19501 0.92765 0.86074 1.40917 0.91774 1.44324 1.35959 1.02314 1.50828 1.21052 0.97279 0.85929 0.94177 1.21797 0.97029 0.98728 0.96821 1.21286 0.97731 0.88982 0.92055 1.60595 1.19246 1.38089 1.12902 1.20233 0.91702 0.93734 0.93291 1.22523 0.98185 0.92108 0.95969 1.21842 1.14475 1.01111 0.91891 1.23210 0.99830 0.87337 0.98306 1.46080 1.52491 1.07676 1.04593 1.18002 1.01878 0.80450 0.95570 1.21150 1.03538 0.98700 0.93149 1.21416 0.96730 0.91390 1.01358 1.21641 0.99653 1.01549 0.91985 1.21355 0.97614 0.94302 0.98601 1.21003 1.02841 0.94247 0.98515 1.77401 1.24018 1.11076 1.00662 1.22650 1.00822 0.96946 0.98689 1.20516 0.87726 0.97488 0.88890 0.94118 0.92779 0.96861 0.90880 0.92950 0.91466 0.83774 0.91534 0.90359 0.80998 0.76756 0.83085 0.81825 0.82577 0.83499 0.86666 0.91446 0.92819 0.98612 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 11.20 21.65 0.24 -55.78 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.76 9.58 84.03 0.81 -13.96 16 8 H 0.06 3.53 7.88 -2.91 -0.02 3.51 16 9 N -0.61 -31.44 3.00 -699.00 -2.10 -33.53 16 10 C 0.14 6.11 6.51 86.37 0.56 6.67 16 11 C -0.10 -3.72 5.69 30.67 0.17 -3.55 16 12 C 0.11 3.65 2.43 44.94 0.11 3.76 16 13 N -0.68 -19.64 6.24 -495.41 -3.09 -22.73 16 14 C 0.14 3.69 6.04 85.56 0.52 4.21 16 15 C 0.08 2.10 6.73 43.11 0.29 2.39 16 16 C -0.26 -5.52 10.74 22.00 0.24 -5.28 16 17 C 0.05 1.01 10.80 83.49 0.90 1.91 16 18 N -0.33 -7.97 3.80 -187.76 -0.71 -8.69 16 19 C 0.13 2.73 6.69 38.09 0.25 2.99 16 20 C -0.14 -1.91 9.46 22.38 0.21 -1.70 16 21 C -0.09 -0.83 10.04 22.25 0.22 -0.61 16 22 C -0.13 -1.28 10.04 22.29 0.22 -1.05 16 23 C -0.10 -1.42 10.04 22.25 0.22 -1.19 16 24 C -0.15 -3.03 9.66 22.39 0.22 -2.82 16 25 N -0.31 -9.17 11.87 -47.33 -0.56 -9.73 16 26 C -0.15 -5.57 5.33 30.67 0.16 -5.41 16 27 C 0.18 8.79 5.30 86.35 0.46 9.25 16 28 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 30 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.33 7.80 -2.39 -0.02 2.31 16 34 H 0.34 9.60 8.47 -89.70 -0.76 8.84 16 35 H 0.07 1.57 7.41 -2.39 -0.02 1.56 16 36 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 37 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.22 1.86 7.04 -2.91 -0.02 1.84 16 39 H 0.15 1.18 6.74 -2.91 -0.02 1.16 16 40 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 41 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.12 2.82 7.70 -2.91 -0.02 2.80 16 44 H 0.07 2.20 7.42 -2.38 -0.02 2.18 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.05 2.92 6.07 -2.38 -0.01 2.91 16 Total: -1.00 -71.89 380.79 2.00 -69.89 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.21 Total: 19.99 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.99 Total: -6.92 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -6.22 Total: -130.45 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.89 2.00 -69.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611346286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.263 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds