Wall clock time and date at job start Tue Mar 31 2020 14:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48500 * 109.46755 * 269.99789 * 3 2 1 5 5 H 1.48497 * 109.47181 * 29.99776 * 3 2 1 6 6 H 1.48496 * 109.47015 * 149.99913 * 3 2 1 7 7 C 1.37879 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00243 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47233 * 184.98878 * 9 7 2 11 11 C 1.46955 * 111.00216 * 295.19370 * 10 9 7 12 12 C 1.53052 * 109.36525 * 183.18398 * 11 10 9 13 13 N 1.46953 * 109.36495 * 301.59963 * 12 11 10 14 14 C 1.46897 * 111.00088 * 183.18903 * 13 12 11 15 15 C 1.50700 * 109.47486 * 170.00102 * 14 13 12 16 16 C 1.38276 * 119.93425 * 89.99611 * 15 14 13 17 17 C 1.38115 * 120.06878 * 179.97438 * 16 15 14 18 18 C 1.38836 * 119.93244 * 0.02562 * 17 16 15 19 19 N 1.40179 * 120.06770 * 179.97438 * 18 17 16 20 20 C 1.35224 * 126.05766 * 179.97438 * 19 18 17 21 21 C 1.35317 * 107.71632 * 180.02562 * 20 19 18 22 22 C 1.39914 * 107.93236 * 0.02562 * 21 20 19 23 23 N 1.30874 * 108.24236 * 359.97438 * 22 21 20 24 24 C 1.38840 * 119.86663 * 0.24937 * 18 17 16 25 25 C 1.38121 * 119.92839 * 359.47525 * 24 18 17 26 26 C 1.46955 * 110.88045 * 59.31926 * 13 12 11 27 27 C 1.46963 * 110.99617 * 58.99076 * 10 9 7 28 28 H 0.97002 * 119.99742 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47162 * 64.99594 * 9 7 2 30 30 H 1.09000 * 109.47587 * 304.99178 * 9 7 2 31 31 H 1.09006 * 109.48477 * 63.21845 * 11 10 9 32 32 H 1.08999 * 109.48859 * 303.15713 * 11 10 9 33 33 H 1.09007 * 109.48718 * 181.63603 * 12 11 10 34 34 H 1.08995 * 109.48496 * 61.56587 * 12 11 10 35 35 H 1.09003 * 109.47199 * 49.99694 * 14 13 12 36 36 H 1.09008 * 109.47034 * 290.00265 * 14 13 12 37 37 H 1.08001 * 119.96664 * 0.02939 * 16 15 14 38 38 H 1.08000 * 120.03716 * 180.02562 * 17 16 15 39 39 H 1.08009 * 126.13966 * 0.03643 * 20 19 18 40 40 H 1.08006 * 126.03316 * 180.26464 * 21 20 19 41 41 H 1.08008 * 125.88001 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.03171 * 179.74533 * 24 18 17 43 43 H 1.08001 * 119.96342 * 180.29881 * 25 24 18 44 44 H 1.09000 * 109.48634 * 60.65030 * 26 13 12 45 45 H 1.08999 * 109.48859 * 180.70741 * 26 13 12 46 46 H 1.08993 * 109.49286 * 296.78432 * 27 10 9 47 47 H 1.09007 * 109.48557 * 56.84962 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5739 -0.1198 11 6 3.6266 -3.3697 1.0575 12 6 4.2215 -4.7742 0.9309 13 7 3.7302 -5.4020 -0.3036 14 6 4.2198 -6.7818 -0.4233 15 6 3.5079 -7.4707 -1.5590 16 6 4.0341 -7.4179 -2.8366 17 6 3.3842 -8.0487 -3.8793 18 6 2.2011 -8.7359 -3.6438 19 7 1.5389 -9.3767 -4.7001 20 6 0.3857 -10.0769 -4.6086 21 6 0.0819 -10.5336 -5.8456 22 6 1.0818 -10.0993 -6.7226 23 7 1.9550 -9.4060 -6.0374 24 6 1.6722 -8.7824 -2.3609 25 6 2.3297 -8.1543 -1.3212 26 6 4.1048 -4.6062 -1.4808 27 6 3.5098 -3.2018 -1.3543 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.7590 0.9309 30 1 3.8746 -0.6053 -0.8425 31 1 2.5405 -3.4390 1.1190 32 1 4.0123 -2.8911 1.9577 33 1 3.9208 -5.3752 1.7892 34 1 5.3089 -4.7067 0.8968 35 1 4.0260 -7.3180 0.5057 36 1 5.2920 -6.7711 -0.6198 37 1 4.9548 -6.8836 -3.0191 38 1 3.7960 -8.0075 -4.8769 39 1 -0.1898 -10.2419 -3.7095 40 1 -0.7821 -11.1252 -6.1100 41 1 1.1251 -10.3009 -7.7829 42 1 0.7498 -9.3127 -2.1754 43 1 1.9213 -8.1942 -0.3222 44 1 5.1909 -4.5370 -1.5424 45 1 3.7191 -5.0848 -2.3810 46 1 2.4225 -3.2691 -1.3203 47 1 3.8106 -2.6007 -2.2125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612450061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:33 Heat of formation + Delta-G solvation = 129.759275 kcal Electronic energy + Delta-G solvation = -26876.339914 eV Core-core repulsion = 23254.143730 eV Total energy + Delta-G solvation = -3622.196184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72578 -39.70666 -38.42180 -35.54241 -33.64239 -32.29880 -31.50262 -30.58255 -30.20569 -30.08755 -28.12559 -25.98254 -24.05260 -23.51096 -22.90569 -22.28473 -21.20327 -20.77533 -20.52588 -19.06148 -18.49158 -16.79664 -16.00312 -15.72554 -15.68060 -15.43007 -15.28502 -14.58910 -14.32986 -14.26673 -14.19556 -14.01601 -13.70110 -13.69242 -13.37087 -13.00356 -12.89534 -12.54752 -12.31485 -12.01284 -11.94088 -11.73208 -11.36831 -11.17046 -10.90490 -10.87242 -10.69863 -10.49079 -10.46032 -10.21611 -10.09370 -9.89129 -9.47895 -9.36748 -9.16966 -8.58723 -8.24528 -8.03776 -7.20088 -6.09476 -4.09191 0.62489 1.16897 1.95826 2.15809 2.51575 3.27606 3.35343 3.39018 3.52082 4.22297 4.26060 4.39979 4.46391 4.65041 4.67803 4.76365 4.95001 4.99549 5.16087 5.20139 5.23791 5.30715 5.37110 5.42228 5.55125 5.56060 5.61310 5.64781 5.80027 5.84405 5.87900 5.93575 6.02611 6.07276 6.10687 6.26137 6.36175 6.45596 6.53544 6.54885 6.77248 6.86596 6.92603 6.96511 7.05899 7.25876 7.32699 7.37344 7.56623 8.05197 8.09436 8.45896 8.94568 9.53310 11.03461 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002574 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.063288 B =10874.595888 C =11867.456646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.155 3.845 10 N -0.537 5.537 11 C 0.062 3.938 12 C 0.061 3.939 13 N -0.531 5.531 14 C 0.093 3.907 15 C -0.076 4.076 16 C -0.089 4.089 17 C -0.118 4.118 18 C 0.150 3.850 19 N -0.318 5.318 20 C 0.054 3.946 21 C -0.266 4.266 22 C 0.051 3.949 23 N -0.291 5.291 24 C -0.139 4.139 25 C -0.070 4.070 26 C 0.057 3.943 27 C 0.063 3.937 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.177 0.823 40 H 0.153 0.847 41 H 0.188 0.812 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -22.150 -6.130 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.261 5.261 11 C -0.067 4.067 12 C -0.067 4.067 13 N -0.256 5.256 14 C -0.035 4.035 15 C -0.078 4.078 16 C -0.108 4.108 17 C -0.137 4.137 18 C 0.058 3.942 19 N -0.093 5.093 20 C -0.089 4.089 21 C -0.295 4.295 22 C -0.136 4.136 23 N -0.110 5.110 24 C -0.160 4.160 25 C -0.090 4.090 26 C -0.071 4.071 27 C -0.066 4.066 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.195 0.805 40 H 0.171 0.829 41 H 0.205 0.795 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.370 -21.315 -6.109 23.070 hybrid contribution -0.704 0.511 -0.103 0.876 sum 5.666 -20.805 -6.212 22.440 Atomic orbital electron populations 1.69933 1.06360 1.26936 1.50465 1.24978 0.94684 0.99173 0.94251 0.86803 0.80373 0.83658 0.78591 1.20232 1.21337 1.18931 1.21702 0.90627 0.94750 1.51771 0.90509 1.20147 0.94709 0.85678 0.96678 1.62628 1.58311 1.03752 1.01417 1.21959 0.99798 0.90953 0.94011 1.22218 0.97332 0.95840 0.91294 1.62148 1.59667 1.00540 1.03220 1.21022 0.96013 0.90031 0.96414 1.19866 0.95775 0.97421 0.94690 1.20991 1.00022 0.98101 0.91683 1.20811 0.94179 0.98269 1.00472 1.17551 0.94076 0.97469 0.85070 1.45924 1.17979 1.39303 1.06131 1.22660 0.89401 0.96137 1.00740 1.21595 1.04360 1.11411 0.92122 1.24065 0.92666 0.96236 1.00596 1.77449 1.23656 1.23079 0.86845 1.20768 1.01259 1.03400 0.90555 1.20835 0.93851 0.95417 0.98858 1.22310 0.97782 0.94330 0.92695 1.21945 0.99417 0.91872 0.93332 0.92719 0.95522 0.95739 0.92827 0.91350 0.91078 0.94727 0.89944 0.94017 0.85238 0.84657 0.80546 0.82942 0.79471 0.85361 0.84758 0.94887 0.90894 0.92587 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.49 27.37 -169.99 -4.65 16.84 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.23 6.69 56.52 0.38 -5.85 16 7 C -0.55 -15.32 8.21 -34.44 -0.28 -15.61 16 8 H 0.08 2.35 6.07 -52.49 -0.32 2.03 16 9 C 0.15 3.72 4.21 -4.98 -0.02 3.70 16 10 N -0.54 -11.20 4.92 -235.90 -1.16 -12.36 16 11 C 0.06 1.17 5.32 -3.77 -0.02 1.15 16 12 C 0.06 0.91 5.61 -3.77 -0.02 0.89 16 13 N -0.53 -7.86 4.70 -235.91 -1.11 -8.97 16 14 C 0.09 1.06 5.11 -4.98 -0.03 1.04 16 15 C -0.08 -0.87 4.90 -104.60 -0.51 -1.38 16 16 C -0.09 -1.00 7.91 -39.61 -0.31 -1.31 16 17 C -0.12 -1.41 9.66 -39.41 -0.38 -1.79 16 18 C 0.15 1.81 6.69 -83.60 -0.56 1.25 16 19 N -0.32 -3.83 3.80 -10.70 -0.04 -3.87 16 20 C 0.05 0.51 10.80 -17.10 -0.18 0.32 16 21 C -0.27 -2.28 10.80 -40.00 -0.43 -2.71 16 22 C 0.05 0.49 12.03 -17.33 -0.21 0.28 16 23 N -0.29 -3.65 11.87 30.64 0.36 -3.29 16 24 C -0.14 -1.46 9.46 -39.40 -0.37 -1.83 16 25 C -0.07 -0.75 9.69 -39.61 -0.38 -1.14 16 26 C 0.06 0.89 5.25 -3.77 -0.02 0.87 16 27 C 0.06 1.25 5.24 -3.76 -0.02 1.23 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.03 0.65 7.52 -51.93 -0.39 0.26 16 30 H 0.02 0.60 7.30 -51.93 -0.38 0.22 16 31 H 0.05 1.18 6.78 -51.93 -0.35 0.82 16 32 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 33 H 0.07 0.92 8.07 -51.92 -0.42 0.50 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 36 H 0.04 0.45 8.06 -51.92 -0.42 0.03 16 37 H 0.13 1.29 7.99 -52.49 -0.42 0.87 16 38 H 0.14 1.61 7.70 -52.49 -0.40 1.20 16 39 H 0.18 1.09 7.04 -52.48 -0.37 0.72 16 40 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.19 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.13 1.02 6.74 -52.48 -0.35 0.67 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.09 5.95 -51.93 -0.31 0.79 16 46 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 47 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -32.96 372.69 -11.07 -44.03 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.01 Total: 1.80 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.85 Total: -13.07 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -1.17 Total: -55.21 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.65 Total: 16.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.96 -11.07 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612450061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.787 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds