Wall clock time and date at job start Tue Mar 31 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48500 * 109.46755 * 269.99789 * 3 2 1 5 5 H 1.48497 * 109.47181 * 29.99776 * 3 2 1 6 6 H 1.48496 * 109.47015 * 149.99913 * 3 2 1 7 7 C 1.37879 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00243 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47233 * 184.98878 * 9 7 2 11 11 C 1.46955 * 111.00216 * 295.19370 * 10 9 7 12 12 C 1.53052 * 109.36525 * 183.18398 * 11 10 9 13 13 N 1.46953 * 109.36495 * 301.59963 * 12 11 10 14 14 C 1.46897 * 111.00088 * 183.18903 * 13 12 11 15 15 C 1.50700 * 109.47486 * 170.00102 * 14 13 12 16 16 C 1.38276 * 119.93425 * 89.99611 * 15 14 13 17 17 C 1.38115 * 120.06878 * 179.97438 * 16 15 14 18 18 C 1.38836 * 119.93244 * 0.02562 * 17 16 15 19 19 N 1.40179 * 120.06770 * 179.97438 * 18 17 16 20 20 C 1.35224 * 126.05766 * 179.97438 * 19 18 17 21 21 C 1.35317 * 107.71632 * 180.02562 * 20 19 18 22 22 C 1.39914 * 107.93236 * 0.02562 * 21 20 19 23 23 N 1.30874 * 108.24236 * 359.97438 * 22 21 20 24 24 C 1.38840 * 119.86663 * 0.24937 * 18 17 16 25 25 C 1.38121 * 119.92839 * 359.47525 * 24 18 17 26 26 C 1.46955 * 110.88045 * 59.31926 * 13 12 11 27 27 C 1.46963 * 110.99617 * 58.99076 * 10 9 7 28 28 H 0.97002 * 119.99742 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47162 * 64.99594 * 9 7 2 30 30 H 1.09000 * 109.47587 * 304.99178 * 9 7 2 31 31 H 1.09006 * 109.48477 * 63.21845 * 11 10 9 32 32 H 1.08999 * 109.48859 * 303.15713 * 11 10 9 33 33 H 1.09007 * 109.48718 * 181.63603 * 12 11 10 34 34 H 1.08995 * 109.48496 * 61.56587 * 12 11 10 35 35 H 1.09003 * 109.47199 * 49.99694 * 14 13 12 36 36 H 1.09008 * 109.47034 * 290.00265 * 14 13 12 37 37 H 1.08001 * 119.96664 * 0.02939 * 16 15 14 38 38 H 1.08000 * 120.03716 * 180.02562 * 17 16 15 39 39 H 1.08009 * 126.13966 * 0.03643 * 20 19 18 40 40 H 1.08006 * 126.03316 * 180.26464 * 21 20 19 41 41 H 1.08008 * 125.88001 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.03171 * 179.74533 * 24 18 17 43 43 H 1.08001 * 119.96342 * 180.29881 * 25 24 18 44 44 H 1.09000 * 109.48634 * 60.65030 * 26 13 12 45 45 H 1.08999 * 109.48859 * 180.70741 * 26 13 12 46 46 H 1.08993 * 109.49286 * 296.78432 * 27 10 9 47 47 H 1.09007 * 109.48557 * 56.84962 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5739 -0.1198 11 6 3.6266 -3.3697 1.0575 12 6 4.2215 -4.7742 0.9309 13 7 3.7302 -5.4020 -0.3036 14 6 4.2198 -6.7818 -0.4233 15 6 3.5079 -7.4707 -1.5590 16 6 4.0341 -7.4179 -2.8366 17 6 3.3842 -8.0487 -3.8793 18 6 2.2011 -8.7359 -3.6438 19 7 1.5389 -9.3767 -4.7001 20 6 0.3857 -10.0769 -4.6086 21 6 0.0819 -10.5336 -5.8456 22 6 1.0818 -10.0993 -6.7226 23 7 1.9550 -9.4060 -6.0374 24 6 1.6722 -8.7824 -2.3609 25 6 2.3297 -8.1543 -1.3212 26 6 4.1048 -4.6062 -1.4808 27 6 3.5098 -3.2018 -1.3543 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.7590 0.9309 30 1 3.8746 -0.6053 -0.8425 31 1 2.5405 -3.4390 1.1190 32 1 4.0123 -2.8911 1.9577 33 1 3.9208 -5.3752 1.7892 34 1 5.3089 -4.7067 0.8968 35 1 4.0260 -7.3180 0.5057 36 1 5.2920 -6.7711 -0.6198 37 1 4.9548 -6.8836 -3.0191 38 1 3.7960 -8.0075 -4.8769 39 1 -0.1898 -10.2419 -3.7095 40 1 -0.7821 -11.1252 -6.1100 41 1 1.1251 -10.3009 -7.7829 42 1 0.7498 -9.3127 -2.1754 43 1 1.9213 -8.1942 -0.3222 44 1 5.1909 -4.5370 -1.5424 45 1 3.7191 -5.0848 -2.3810 46 1 2.4225 -3.2691 -1.3203 47 1 3.8106 -2.6007 -2.2125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612450061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:32 Heat of formation + Delta-G solvation = 107.636577 kcal Electronic energy + Delta-G solvation = -26877.299226 eV Core-core repulsion = 23254.143730 eV Total energy + Delta-G solvation = -3623.155497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46923 -40.70271 -39.66294 -36.92304 -34.82949 -34.15256 -32.33547 -31.81365 -31.38609 -30.96141 -29.63130 -27.37458 -25.36157 -24.61394 -23.99725 -23.44479 -22.72502 -21.52231 -21.34910 -20.64924 -19.25538 -18.86154 -17.29420 -16.74630 -16.52386 -16.31097 -16.18498 -16.06137 -15.87392 -15.75663 -15.43570 -15.19385 -14.75002 -14.51987 -14.41806 -14.29125 -14.17191 -13.67382 -13.62890 -13.50114 -13.16541 -12.99253 -12.70334 -12.55878 -12.21690 -12.12147 -12.09599 -12.02253 -11.75654 -11.67246 -11.61544 -11.41189 -11.20724 -10.79683 -10.12120 -10.00730 -9.28365 -9.02507 -8.92419 -8.31938 -6.37107 -0.18312 0.33649 1.17917 1.34748 1.35705 1.42001 1.48125 1.84240 2.32989 2.63444 3.03004 3.18876 3.32153 3.49242 3.79784 3.81132 3.90367 4.00677 4.05485 4.22545 4.25965 4.36157 4.36676 4.43866 4.50609 4.56882 4.63691 4.70204 4.73363 4.75880 4.82346 4.88523 4.96634 5.00685 5.03524 5.05075 5.12990 5.17421 5.21441 5.24491 5.26055 5.50777 5.59001 5.66761 5.77327 6.02645 6.10477 6.19190 6.22109 6.34974 6.41004 6.63181 6.70244 7.29541 8.84554 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002574 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.063288 B =10874.595888 C =11867.456646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.547 4.547 8 H 0.033 0.967 9 C 0.160 3.840 10 N -0.530 5.530 11 C 0.061 3.939 12 C 0.072 3.928 13 N -0.549 5.549 14 C 0.098 3.902 15 C -0.088 4.088 16 C -0.090 4.090 17 C -0.135 4.135 18 C 0.137 3.863 19 N -0.336 5.336 20 C 0.043 3.957 21 C -0.266 4.266 22 C 0.049 3.951 23 N -0.338 5.338 24 C -0.141 4.141 25 C -0.074 4.074 26 C 0.071 3.929 27 C 0.065 3.935 28 H 0.266 0.734 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.205 0.795 40 H 0.182 0.818 41 H 0.217 0.783 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.011 0.989 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 -23.166 -5.762 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.586 4.586 8 H 0.051 0.949 9 C 0.033 3.967 10 N -0.253 5.253 11 C -0.068 4.068 12 C -0.056 4.056 13 N -0.274 5.274 14 C -0.028 4.028 15 C -0.089 4.089 16 C -0.109 4.109 17 C -0.155 4.155 18 C 0.044 3.956 19 N -0.112 5.112 20 C -0.099 4.099 21 C -0.294 4.294 22 C -0.137 4.137 23 N -0.157 5.157 24 C -0.162 4.162 25 C -0.093 4.093 26 C -0.057 4.057 27 C -0.064 4.064 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.222 0.778 40 H 0.199 0.801 41 H 0.234 0.766 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.029 0.971 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.823 -22.367 -5.743 24.382 hybrid contribution -1.270 0.685 -0.277 1.469 sum 6.553 -21.683 -6.020 23.438 Atomic orbital electron populations 1.70091 1.08396 1.28124 1.52283 1.25953 0.95538 1.03489 0.93903 0.85656 0.79534 0.78254 0.79146 1.19346 1.20971 1.16811 1.21885 0.92742 0.93118 1.50868 0.94920 1.20026 0.91842 0.88064 0.96810 1.62671 1.57411 1.02698 1.02537 1.22028 0.97618 0.93663 0.93510 1.22119 0.97739 0.93357 0.92388 1.62076 1.60686 1.02089 1.02593 1.21060 0.96636 0.87731 0.97383 1.19960 0.96295 0.97992 0.94700 1.21111 1.00330 0.97893 0.91564 1.20864 0.94869 0.99311 1.00439 1.17835 0.94279 0.97556 0.85883 1.46067 1.18909 1.40251 1.05978 1.23312 0.88826 0.95435 1.02362 1.22026 1.04799 1.11050 0.91545 1.24707 0.92118 0.94872 1.01998 1.77401 1.25571 1.25077 0.87675 1.21032 1.02007 1.03293 0.89825 1.21102 0.93618 0.94931 0.99657 1.22096 0.98149 0.91792 0.93652 1.21932 0.96891 0.94699 0.92862 0.92556 0.95054 0.95400 0.96906 0.90681 0.88526 0.93220 0.87963 0.92622 0.84206 0.85508 0.77781 0.80088 0.76639 0.83024 0.83245 0.93370 0.90303 0.97062 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.01 0.52 5.47 84.66 0.46 0.99 16 3 Si 0.95 44.36 27.37 68.60 1.88 46.23 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.24 -10.55 6.69 99.48 0.67 -9.89 16 7 C -0.55 -31.59 8.21 25.60 0.21 -31.38 16 8 H 0.03 2.13 6.07 -2.91 -0.02 2.12 16 9 C 0.16 7.71 4.21 85.56 0.36 8.07 16 10 N -0.53 -22.00 4.92 -900.25 -4.43 -26.43 16 11 C 0.06 2.29 5.32 86.31 0.46 2.74 16 12 C 0.07 1.98 5.61 86.31 0.48 2.47 16 13 N -0.55 -15.37 4.70 -900.29 -4.23 -19.60 16 14 C 0.10 1.99 5.11 85.56 0.44 2.42 16 15 C -0.09 -1.88 4.90 -19.85 -0.10 -1.98 16 16 C -0.09 -1.96 7.91 22.25 0.18 -1.78 16 17 C -0.13 -3.28 9.66 22.38 0.22 -3.07 16 18 C 0.14 3.28 6.69 38.09 0.25 3.53 16 19 N -0.34 -8.02 3.80 -187.76 -0.71 -8.74 16 20 C 0.04 0.75 10.80 83.50 0.90 1.65 16 21 C -0.27 -4.08 10.80 22.00 0.24 -3.84 16 22 C 0.05 0.89 12.03 85.24 1.03 1.92 16 23 N -0.34 -8.54 11.87 -56.97 -0.68 -9.21 16 24 C -0.14 -2.80 9.46 22.39 0.21 -2.59 16 25 C -0.07 -1.48 9.69 22.25 0.22 -1.26 16 26 C 0.07 2.17 5.25 86.31 0.45 2.62 16 27 C 0.07 2.62 5.24 86.31 0.45 3.07 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.03 1.49 7.52 -2.39 -0.02 1.47 16 30 H 0.03 1.33 7.30 -2.39 -0.02 1.31 16 31 H 0.01 0.58 6.78 -2.38 -0.02 0.56 16 32 H 0.07 2.68 8.12 -2.39 -0.02 2.66 16 33 H 0.10 2.21 8.07 -2.38 -0.02 2.19 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.68 7.97 -2.39 -0.02 1.66 16 36 H 0.06 1.00 8.06 -2.38 -0.02 0.98 16 37 H 0.14 2.62 7.99 -2.91 -0.02 2.60 16 38 H 0.13 3.19 7.70 -2.91 -0.02 3.17 16 39 H 0.21 2.08 7.04 -2.91 -0.02 2.06 16 40 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.22 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.15 2.13 6.74 -2.91 -0.02 2.11 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 2.32 5.95 -2.39 -0.01 2.30 16 46 H 0.01 0.54 6.62 -2.39 -0.02 0.53 16 47 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -75.03 372.69 -0.49 -75.52 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.92 Total: 18.35 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 6.46 Total: -16.41 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -9.75 Total: -123.70 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.23 kcal Total: -75.03 -0.49 -75.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612450061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.158 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds