Wall clock time and date at job start Tue Mar 31 2020 14:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48495 * 109.47316 * 269.99462 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00214 * 3 2 1 6 6 H 1.48504 * 109.47339 * 149.99517 * 3 2 1 7 7 C 1.38814 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99980 * 197.36718 * 7 2 1 9 9 N 1.36932 * 119.99982 * 17.37133 * 7 2 1 10 10 C 1.46927 * 120.63177 * 27.66313 * 9 7 2 11 11 C 1.53186 * 108.77731 * 126.41349 * 10 9 7 12 12 C 1.53045 * 109.31313 * 54.63323 * 11 10 9 13 13 N 1.46904 * 109.45868 * 178.61429 * 12 11 10 14 14 C 1.46902 * 110.99747 * 205.00466 * 13 12 11 15 15 H 1.08998 * 109.47161 * 324.99746 * 14 13 12 16 16 C 1.50695 * 109.47492 * 85.00193 * 14 13 12 17 17 N 1.30500 * 125.64793 * 24.68922 * 16 14 13 18 18 C 1.34136 * 109.25551 * 179.89524 * 17 16 14 19 19 C 1.34671 * 108.01573 * 0.37260 * 18 17 16 20 20 N 1.35043 * 125.65100 * 205.00246 * 16 14 13 21 21 H 0.97003 * 126.39645 * 359.93486 * 20 16 14 22 22 C 1.50702 * 109.46608 * 205.00008 * 14 13 12 23 23 C 1.38231 * 120.00375 * 319.72412 * 22 14 13 24 24 C 1.38234 * 120.00074 * 179.79190 * 23 22 14 25 25 C 1.38236 * 120.00203 * 0.43619 * 24 23 22 26 26 C 1.38240 * 119.99715 * 359.81790 * 25 24 23 27 27 C 1.38233 * 119.99925 * 359.97438 * 26 25 24 28 28 C 1.53033 * 109.53994 * 298.63362 * 12 11 10 29 29 C 1.46931 * 120.63204 * 207.68569 * 9 7 2 30 30 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.58379 * 6.62445 * 10 9 7 32 32 H 1.09000 * 109.58552 * 246.19923 * 10 9 7 33 33 H 1.09002 * 109.49990 * 294.68316 * 11 10 9 34 34 H 1.09002 * 109.50213 * 174.58772 * 11 10 9 35 35 H 1.09001 * 109.45779 * 58.65773 * 12 11 10 36 36 H 1.00899 * 111.00110 * 328.95330 * 13 12 11 37 37 H 1.07998 * 125.98931 * 180.11482 * 18 17 16 38 38 H 1.08002 * 126.58313 * 179.81881 * 19 18 17 39 39 H 1.08004 * 119.99928 * 359.97438 * 23 22 14 40 40 H 1.07999 * 119.99626 * 180.27737 * 24 23 22 41 41 H 1.07993 * 120.00316 * 179.83476 * 25 24 23 42 42 H 1.07994 * 120.00095 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99799 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.49679 * 181.31448 * 28 12 11 45 45 H 1.08998 * 109.50318 * 301.38284 * 28 12 11 46 46 H 1.08998 * 109.59021 * 113.80096 * 29 9 7 47 47 H 1.08998 * 109.69942 * 353.44153 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3725 -2.3611 -0.3530 10 6 0.2279 -2.3349 -1.2739 11 6 0.5008 -3.3052 -2.4274 12 6 0.8187 -4.6903 -1.8593 13 7 1.0484 -5.6313 -2.9637 14 6 0.7714 -7.0119 -2.5451 15 1 1.0624 -7.1408 -1.5026 16 6 -0.7009 -7.2964 -2.6946 17 7 -1.5150 -6.6835 -3.5097 18 6 -2.7464 -7.1980 -3.3750 19 6 -2.6948 -8.1610 -2.4350 20 7 -1.3975 -8.2238 -2.0030 21 1 -1.0444 -8.8229 -1.3267 22 6 1.5574 -7.9655 -3.4076 23 6 1.6795 -7.7302 -4.7642 24 6 2.4041 -8.6027 -5.5546 25 6 2.9991 -9.7153 -4.9899 26 6 2.8726 -9.9534 -3.6340 27 6 2.1516 -9.0787 -2.8430 28 6 2.0744 -4.6103 -0.9882 29 6 1.8193 -3.6547 0.1817 30 1 -0.4850 0.8400 0.0004 31 1 0.0986 -1.3267 -1.6673 32 1 -0.6742 -2.6412 -0.7444 33 1 1.3494 -2.9477 -3.0106 34 1 -0.3800 -3.3676 -3.0666 35 1 -0.0204 -5.0366 -1.2559 36 1 0.4986 -5.3814 -3.7720 37 1 -3.6259 -6.8908 -3.9213 38 1 -3.5187 -8.7676 -2.0890 39 1 1.2112 -6.8631 -5.2062 40 1 2.5032 -8.4163 -6.6138 41 1 3.5630 -10.3983 -5.6078 42 1 3.3371 -10.8229 -3.1929 43 1 2.0525 -9.2650 -1.7838 44 1 2.3136 -5.6014 -0.6028 45 1 2.9084 -4.2409 -1.5850 46 1 1.0470 -4.0687 0.8299 47 1 2.7394 -3.5192 0.7502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615085779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:22 Heat of formation + Delta-G solvation = 110.063001 kcal Electronic energy + Delta-G solvation = -27835.105274 eV Core-core repulsion = 24212.054995 eV Total energy + Delta-G solvation = -3623.050279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.17159 -39.41085 -37.91842 -35.49583 -32.91457 -32.57228 -31.20094 -30.91943 -29.87626 -29.54947 -28.53159 -25.66839 -24.26917 -22.68250 -22.12059 -21.96198 -21.45169 -21.28969 -20.05621 -19.01180 -18.23139 -17.12487 -16.58397 -15.65903 -15.38703 -14.97688 -14.79216 -14.75979 -14.32499 -14.11096 -13.82237 -13.66512 -13.44088 -13.42760 -13.38263 -12.99031 -12.81432 -12.41427 -12.08982 -12.05079 -11.35287 -11.24531 -11.07195 -10.93242 -10.77147 -10.67473 -10.27230 -10.15274 -10.10809 -10.09102 -9.88930 -9.52635 -9.41176 -8.98738 -8.85915 -8.47272 -8.41914 -8.30120 -6.61811 -5.72965 -3.14671 1.22659 1.35363 1.97327 2.99798 3.08349 3.42504 3.49208 3.50266 3.67013 4.29187 4.37471 4.55170 4.75238 4.83579 4.93390 4.96115 5.04077 5.14639 5.30739 5.41109 5.43967 5.49424 5.51736 5.58559 5.63107 5.76397 5.85699 5.97136 5.99317 6.01540 6.20374 6.35033 6.41462 6.44337 6.46559 6.56017 6.60709 6.69691 6.71030 6.77823 6.88477 6.91440 7.08924 7.20327 7.34816 7.45669 7.65075 7.73552 7.85693 8.02696 8.51177 9.27438 9.91290 10.48236 11.35616 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003222 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.529344 B = 8689.323625 C = 9696.824566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.139 4.139 12 C 0.100 3.900 13 N -0.660 5.660 14 C 0.212 3.788 15 H 0.097 0.903 16 C 0.190 3.810 17 N -0.482 5.482 18 C -0.024 4.024 19 C -0.060 4.060 20 N -0.563 5.563 21 H 0.417 0.583 22 C -0.064 4.064 23 C -0.081 4.081 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.118 4.118 29 C 0.146 3.854 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.356 0.644 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.012 0.988 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 -22.537 -7.418 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.178 4.178 12 C -0.009 4.009 13 N -0.292 5.292 14 C 0.099 3.901 15 H 0.115 0.885 16 C -0.076 4.076 17 N -0.202 5.202 18 C -0.172 4.172 19 C -0.194 4.194 20 N -0.166 5.166 21 H 0.254 0.746 22 C -0.066 4.066 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.135 4.135 28 C -0.158 4.158 29 C 0.019 3.981 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.192 0.808 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.030 0.970 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.043 -21.725 -7.853 23.101 hybrid contribution -0.887 -0.187 0.944 1.309 sum -0.930 -21.912 -6.909 22.994 Atomic orbital electron populations 1.70035 1.05258 1.25414 1.54139 1.25028 0.95269 0.98379 1.01072 0.86290 0.79081 0.83709 0.77703 1.21436 1.21866 1.20464 1.19212 0.92712 0.84915 1.41130 0.91670 1.44059 1.35823 1.01386 1.50145 1.20725 0.88430 0.98222 0.87709 1.22363 1.00368 0.94846 1.00258 1.21464 0.96459 0.92011 0.90976 1.60918 1.60327 0.98787 1.09129 1.18890 0.82132 0.90420 0.98701 0.88522 1.24356 0.97188 0.91596 0.94482 1.70053 1.01432 1.26552 1.22153 1.22320 0.96038 0.97770 1.01066 1.22744 0.87184 1.05974 1.03490 1.43260 1.08891 1.31152 1.33303 0.74615 1.19589 0.98076 0.94642 0.94281 1.20992 0.97317 0.98617 0.93045 1.21168 0.98074 0.94945 0.99897 1.21127 0.99998 0.97789 0.95187 1.21026 0.99619 0.99495 0.94040 1.20953 0.98436 0.94578 0.99568 1.22053 0.97509 0.98309 0.97937 1.20902 0.97369 0.87012 0.92853 0.93700 0.89311 0.96785 0.91866 0.93203 0.94766 0.82243 0.81372 0.80825 0.85609 0.86150 0.86395 0.86277 0.86454 0.93834 0.91530 0.97046 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 11.19 55.49 0.62 -26.11 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -7.01 9.59 -15.06 -0.14 -7.15 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.19 2.99 -172.32 -0.52 -15.71 16 10 C 0.18 4.33 5.31 -3.71 -0.02 4.31 16 11 C -0.14 -2.80 5.36 -26.61 -0.14 -2.94 16 12 C 0.10 1.76 2.26 -67.67 -0.15 1.61 16 13 N -0.66 -9.96 5.51 -102.13 -0.56 -10.52 16 14 C 0.21 2.71 2.54 -70.02 -0.18 2.53 16 15 H 0.10 1.19 6.96 -51.93 -0.36 0.83 16 16 C 0.19 2.47 6.74 -155.42 -1.05 1.42 16 17 N -0.48 -7.07 10.31 -10.82 -0.11 -7.18 16 18 C -0.02 -0.29 11.87 -17.81 -0.21 -0.50 16 19 C -0.06 -0.60 12.04 -16.56 -0.20 -0.80 16 20 N -0.56 -5.76 6.15 -10.23 -0.06 -5.82 16 21 H 0.42 2.97 8.96 -40.82 -0.37 2.61 16 22 C -0.06 -0.77 4.94 -104.62 -0.52 -1.28 16 23 C -0.08 -0.99 9.32 -39.59 -0.37 -1.36 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.12 -1.19 9.67 -39.58 -0.38 -1.57 16 28 C -0.12 -2.15 5.57 -26.61 -0.15 -2.29 16 29 C 0.15 3.14 6.51 -3.70 -0.02 3.11 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.03 0.65 7.63 -51.93 -0.40 0.25 16 36 H 0.36 5.57 6.73 -39.29 -0.26 5.31 16 37 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.59 7.26 -52.48 -0.38 1.20 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 44 H 0.04 0.69 7.41 -51.93 -0.38 0.30 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -32.54 377.95 -11.86 -44.40 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.08 Total: 7.99 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -4.82 Total: -9.79 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.63 Total: -65.35 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.54 -11.86 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615085779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.463 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds