Wall clock time and date at job start Tue Mar 31 2020 14:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48495 * 109.47316 * 269.99462 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00214 * 3 2 1 6 6 H 1.48504 * 109.47339 * 149.99517 * 3 2 1 7 7 C 1.38814 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99980 * 197.36718 * 7 2 1 9 9 N 1.36932 * 119.99982 * 17.37133 * 7 2 1 10 10 C 1.46927 * 120.63177 * 27.66313 * 9 7 2 11 11 C 1.53186 * 108.77731 * 126.41349 * 10 9 7 12 12 C 1.53045 * 109.31313 * 54.63323 * 11 10 9 13 13 N 1.46904 * 109.45868 * 178.61429 * 12 11 10 14 14 C 1.46902 * 110.99747 * 205.00466 * 13 12 11 15 15 H 1.08998 * 109.47161 * 324.99746 * 14 13 12 16 16 C 1.50695 * 109.47492 * 85.00193 * 14 13 12 17 17 N 1.30500 * 125.64793 * 24.68922 * 16 14 13 18 18 C 1.34136 * 109.25551 * 179.89524 * 17 16 14 19 19 C 1.34671 * 108.01573 * 0.37260 * 18 17 16 20 20 N 1.35043 * 125.65100 * 205.00246 * 16 14 13 21 21 H 0.97003 * 126.39645 * 359.93486 * 20 16 14 22 22 C 1.50702 * 109.46608 * 205.00008 * 14 13 12 23 23 C 1.38231 * 120.00375 * 319.72412 * 22 14 13 24 24 C 1.38234 * 120.00074 * 179.79190 * 23 22 14 25 25 C 1.38236 * 120.00203 * 0.43619 * 24 23 22 26 26 C 1.38240 * 119.99715 * 359.81790 * 25 24 23 27 27 C 1.38233 * 119.99925 * 359.97438 * 26 25 24 28 28 C 1.53033 * 109.53994 * 298.63362 * 12 11 10 29 29 C 1.46931 * 120.63204 * 207.68569 * 9 7 2 30 30 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.58379 * 6.62445 * 10 9 7 32 32 H 1.09000 * 109.58552 * 246.19923 * 10 9 7 33 33 H 1.09002 * 109.49990 * 294.68316 * 11 10 9 34 34 H 1.09002 * 109.50213 * 174.58772 * 11 10 9 35 35 H 1.09001 * 109.45779 * 58.65773 * 12 11 10 36 36 H 1.00899 * 111.00110 * 328.95330 * 13 12 11 37 37 H 1.07998 * 125.98931 * 180.11482 * 18 17 16 38 38 H 1.08002 * 126.58313 * 179.81881 * 19 18 17 39 39 H 1.08004 * 119.99928 * 359.97438 * 23 22 14 40 40 H 1.07999 * 119.99626 * 180.27737 * 24 23 22 41 41 H 1.07993 * 120.00316 * 179.83476 * 25 24 23 42 42 H 1.07994 * 120.00095 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99799 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.49679 * 181.31448 * 28 12 11 45 45 H 1.08998 * 109.50318 * 301.38284 * 28 12 11 46 46 H 1.08998 * 109.59021 * 113.80096 * 29 9 7 47 47 H 1.08998 * 109.69942 * 353.44153 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3725 -2.3611 -0.3530 10 6 0.2279 -2.3349 -1.2739 11 6 0.5008 -3.3052 -2.4274 12 6 0.8187 -4.6903 -1.8593 13 7 1.0484 -5.6313 -2.9637 14 6 0.7714 -7.0119 -2.5451 15 1 1.0624 -7.1408 -1.5026 16 6 -0.7009 -7.2964 -2.6946 17 7 -1.5150 -6.6835 -3.5097 18 6 -2.7464 -7.1980 -3.3750 19 6 -2.6948 -8.1610 -2.4350 20 7 -1.3975 -8.2238 -2.0030 21 1 -1.0444 -8.8229 -1.3267 22 6 1.5574 -7.9655 -3.4076 23 6 1.6795 -7.7302 -4.7642 24 6 2.4041 -8.6027 -5.5546 25 6 2.9991 -9.7153 -4.9899 26 6 2.8726 -9.9534 -3.6340 27 6 2.1516 -9.0787 -2.8430 28 6 2.0744 -4.6103 -0.9882 29 6 1.8193 -3.6547 0.1817 30 1 -0.4850 0.8400 0.0004 31 1 0.0986 -1.3267 -1.6673 32 1 -0.6742 -2.6412 -0.7444 33 1 1.3494 -2.9477 -3.0106 34 1 -0.3800 -3.3676 -3.0666 35 1 -0.0204 -5.0366 -1.2559 36 1 0.4986 -5.3814 -3.7720 37 1 -3.6259 -6.8908 -3.9213 38 1 -3.5187 -8.7676 -2.0890 39 1 1.2112 -6.8631 -5.2062 40 1 2.5032 -8.4163 -6.6138 41 1 3.5630 -10.3983 -5.6078 42 1 3.3371 -10.8229 -3.1929 43 1 2.0525 -9.2650 -1.7838 44 1 2.3136 -5.6014 -0.6028 45 1 2.9084 -4.2409 -1.5850 46 1 1.0470 -4.0687 0.8299 47 1 2.7394 -3.5192 0.7502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615085779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:21 Heat of formation + Delta-G solvation = 90.621176 kcal Electronic energy + Delta-G solvation = -27835.948335 eV Core-core repulsion = 24212.054995 eV Total energy + Delta-G solvation = -3623.893340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.04980 -40.29233 -39.41966 -36.92866 -34.53884 -33.50329 -32.73636 -31.73353 -31.54544 -30.66375 -29.87074 -27.04748 -25.85626 -23.86969 -23.58908 -22.86101 -22.79861 -22.29303 -21.01281 -20.70691 -19.12358 -18.75619 -17.79339 -16.93181 -16.57168 -16.32585 -15.98076 -15.70757 -15.60002 -15.33742 -15.31578 -14.97311 -14.74065 -14.59725 -14.43311 -14.19296 -14.04470 -13.75952 -13.49086 -13.17536 -13.11277 -12.88509 -12.58165 -12.44913 -12.17706 -12.08128 -11.92908 -11.82715 -11.79392 -11.29958 -11.17676 -11.01573 -11.00160 -10.54322 -9.76322 -9.68329 -9.56451 -9.31560 -8.70515 -7.87401 -5.32640 0.44377 0.58272 1.13255 1.46759 1.49145 1.57502 2.16399 2.21590 2.51734 2.82315 3.17674 3.30252 3.49741 3.68519 3.86360 3.91286 4.05351 4.15117 4.21637 4.24541 4.33681 4.35299 4.43884 4.50432 4.54111 4.67588 4.69854 4.71063 4.76662 4.86434 4.96236 4.99565 5.08502 5.12976 5.14933 5.22531 5.24167 5.39670 5.52378 5.60480 5.64720 5.67782 5.69399 5.73563 5.80142 6.06730 6.17339 6.35650 6.39113 6.49161 7.13721 7.14144 7.85549 8.37982 9.19386 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003222 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.529344 B = 8689.323625 C = 9696.824566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.186 3.814 11 C -0.124 4.124 12 C 0.116 3.884 13 N -0.657 5.657 14 C 0.217 3.783 15 H 0.105 0.895 16 C 0.173 3.827 17 N -0.519 5.519 18 C -0.062 4.062 19 C -0.039 4.039 20 N -0.553 5.553 21 H 0.432 0.568 22 C -0.077 4.077 23 C -0.103 4.103 24 C -0.133 4.133 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.103 4.103 29 C 0.142 3.858 30 H 0.249 0.751 31 H 0.054 0.946 32 H -0.011 1.011 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.352 0.648 37 H 0.179 0.821 38 H 0.214 0.786 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.010 0.990 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -25.296 -7.143 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.059 3.941 11 C -0.163 4.163 12 C 0.006 3.994 13 N -0.287 5.287 14 C 0.104 3.896 15 H 0.123 0.877 16 C -0.093 4.093 17 N -0.240 5.240 18 C -0.209 4.209 19 C -0.173 4.173 20 N -0.158 5.158 21 H 0.272 0.728 22 C -0.079 4.079 23 C -0.122 4.122 24 C -0.151 4.151 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.143 4.143 29 C 0.016 3.984 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.173 0.827 37 H 0.196 0.804 38 H 0.230 0.770 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.028 0.972 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.190 -24.534 -7.569 25.703 hybrid contribution -1.303 0.562 0.853 1.656 sum -0.114 -23.972 -6.715 24.895 Atomic orbital electron populations 1.70194 1.06759 1.25830 1.55517 1.25814 0.96039 1.01593 1.01296 0.85249 0.78159 0.79410 0.77547 1.21291 1.22148 1.19103 1.19557 0.93058 0.86090 1.40562 0.91385 1.44319 1.35783 1.02404 1.50793 1.20456 0.87583 0.97398 0.88640 1.22109 1.00307 0.95545 0.98385 1.21144 0.95823 0.90984 0.91421 1.60841 1.60283 0.99737 1.07860 1.18876 0.82555 0.88940 0.99240 0.87734 1.24230 0.97200 0.92671 0.95232 1.69968 1.02712 1.27913 1.23387 1.22725 0.95945 0.99324 1.02910 1.23317 0.87707 1.04694 1.01624 1.43231 1.08794 1.30652 1.33080 0.72774 1.19564 0.98895 0.95394 0.94025 1.21006 0.98509 0.98936 0.93710 1.21382 0.97995 0.95187 1.00555 1.21474 0.99479 0.97533 0.95818 1.21399 0.98888 0.99974 0.93966 1.21226 0.97868 0.93904 1.00858 1.21859 0.97073 0.98927 0.96430 1.21067 0.97233 0.85904 0.94203 0.94148 0.92755 0.99284 0.92535 0.92619 0.95895 0.82690 0.80382 0.76962 0.87260 0.85000 0.84014 0.83593 0.84275 0.90519 0.92450 0.97191 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 11.19 21.65 0.24 -56.98 16 2 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 3 Si 0.97 46.07 29.59 68.60 2.03 48.10 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.26 -14.92 9.59 84.03 0.81 -14.11 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 9 N -0.61 -31.94 2.99 -699.09 -2.09 -34.04 16 10 C 0.19 9.55 5.31 86.36 0.46 10.01 16 11 C -0.12 -5.13 5.36 30.67 0.16 -4.97 16 12 C 0.12 4.07 2.26 44.94 0.10 4.17 16 13 N -0.66 -19.59 5.51 -477.04 -2.63 -22.21 16 14 C 0.22 5.29 2.54 43.42 0.11 5.40 16 15 H 0.10 2.33 6.96 -2.39 -0.02 2.31 16 16 C 0.17 4.34 6.74 138.13 0.93 5.27 16 17 N -0.52 -15.28 10.31 -188.13 -1.94 -17.22 16 18 C -0.06 -1.49 11.87 83.52 0.99 -0.50 16 19 C -0.04 -0.69 12.04 83.09 1.00 0.31 16 20 N -0.55 -10.15 6.15 -186.27 -1.15 -11.30 16 21 H 0.43 4.94 8.96 -92.71 -0.83 4.10 16 22 C -0.08 -1.73 4.94 -19.86 -0.10 -1.83 16 23 C -0.10 -2.46 9.32 22.27 0.21 -2.25 16 24 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 25 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 26 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 27 C -0.12 -2.11 9.67 22.27 0.22 -1.90 16 28 C -0.10 -3.63 5.57 30.67 0.17 -3.45 16 29 C 0.14 6.06 6.51 86.36 0.56 6.62 16 30 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.05 3.15 6.04 -2.39 -0.01 3.13 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 35 H 0.02 0.87 7.63 -2.39 -0.02 0.85 16 36 H 0.35 11.24 6.73 -89.69 -0.60 10.64 16 37 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.11 2.87 7.26 -2.91 -0.02 2.85 16 40 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 1.75 8.04 -2.91 -0.02 1.72 16 44 H 0.08 2.21 7.41 -2.39 -0.02 2.19 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 2.42 7.94 -2.39 -0.02 2.40 16 Total: -1.00 -72.53 377.95 0.72 -71.81 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -0.45 Total: 27.60 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 6.71 Total: -5.77 kcal Atomic # 7 Polarization: -134.18 SS G_CDS: -7.56 Total: -141.74 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.53 0.72 -71.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615085779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.429 kcal (2) G-P(sol) polarization free energy of solvation -72.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds