Wall clock time and date at job start Tue Mar 31 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50699 * 109.46767 * 66.20188 * 14 13 12 16 16 N 1.30525 * 125.71646 * 90.02505 * 15 14 13 17 17 C 1.34119 * 109.34993 * 179.97438 * 16 15 14 18 18 C 1.34654 * 108.19863 * 0.02562 * 17 16 15 19 19 N 1.35828 * 125.71910 * 269.71966 * 15 14 13 20 20 C 1.40246 * 126.47173 * 359.97438 * 19 15 14 21 21 C 1.38810 * 120.06700 * 309.72982 * 20 19 15 22 22 C 1.38121 * 119.93699 * 179.69756 * 21 20 19 23 23 C 1.38288 * 120.06096 * 0.57786 * 22 21 20 24 24 C 1.38268 * 120.12916 * 359.72177 * 23 22 21 25 25 C 1.38132 * 120.06505 * 359.97438 * 24 23 22 26 26 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 27 27 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 28 28 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 30 30 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 31 31 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 32 32 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 33 33 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 34 34 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 35 35 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 36 36 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 37 37 H 1.08006 * 125.90101 * 179.97438 * 17 16 15 38 38 H 1.07999 * 126.58408 * 179.97438 * 18 17 16 39 39 H 1.08004 * 120.03045 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.97667 * 180.31795 * 22 21 20 41 41 H 1.08002 * 119.93007 * 179.70224 * 23 22 21 42 42 H 1.08000 * 119.96877 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.02931 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.48908 * 180.71202 * 26 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 26 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 27 10 9 47 47 H 1.09003 * 109.49032 * 56.82589 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5207 -8.4808 -0.9460 16 7 3.1401 -9.1410 -2.0057 17 6 2.4971 -10.2556 -1.6278 18 6 2.4749 -10.2925 -0.2819 19 7 3.1289 -9.1703 0.1568 20 6 3.3495 -8.8023 1.4920 21 6 4.6235 -8.4485 1.9146 22 6 4.8365 -8.0806 3.2287 23 6 3.7843 -8.0759 4.1260 24 6 2.5154 -8.4339 3.7095 25 6 2.2952 -8.7967 2.3950 26 6 4.0043 -4.7809 -1.1842 27 6 2.9687 -3.6562 -1.2558 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8897 31 1 0.9734 -4.8433 1.1788 32 1 0.8254 -5.0915 -0.5780 33 1 3.2356 -5.8353 1.1420 34 1 2.0486 -6.9718 0.4571 35 1 4.9008 -7.1180 -1.8359 36 1 4.9009 -7.1180 -0.0559 37 1 2.0700 -10.9954 -2.2888 38 1 2.0309 -11.0608 0.3337 39 1 5.4464 -8.4559 1.2151 40 1 5.8265 -7.8002 3.5569 41 1 3.9542 -7.7925 5.1542 42 1 1.6954 -8.4289 4.4124 43 1 1.3037 -9.0758 2.0702 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618289729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:03 Heat of formation + Delta-G solvation = 116.379285 kcal Electronic energy + Delta-G solvation = -28040.698917 eV Core-core repulsion = 24417.922532 eV Total energy + Delta-G solvation = -3622.776384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.50127 -39.34341 -38.65889 -35.23396 -34.23596 -32.57510 -31.53078 -30.63780 -30.32207 -29.57877 -27.99111 -26.03090 -24.04220 -23.36600 -23.12121 -23.00765 -21.44257 -21.09262 -20.00507 -19.16768 -18.13436 -16.74572 -16.38887 -16.27716 -15.60131 -15.12621 -14.90748 -14.71597 -14.59495 -14.31193 -14.17307 -14.01123 -13.88652 -13.70260 -13.43843 -13.21944 -13.02793 -12.62039 -12.25378 -12.04790 -11.90135 -11.63199 -11.50948 -11.18886 -10.86524 -10.74638 -10.65917 -10.49838 -10.36430 -10.27238 -10.03711 -9.72484 -9.39709 -9.16317 -8.94751 -8.54109 -8.42891 -8.12572 -7.21588 -6.01410 -4.02937 0.67127 0.93942 1.92180 2.50951 3.00980 3.31731 3.32311 3.38367 3.42312 4.12018 4.32650 4.43109 4.45738 4.47441 4.58301 4.73833 4.95413 4.98076 4.98454 5.10466 5.24593 5.28410 5.33907 5.36836 5.47687 5.52610 5.56104 5.60959 5.76387 5.78949 5.82141 5.89924 5.95432 6.05129 6.09698 6.16909 6.21464 6.40103 6.43255 6.59876 6.63587 6.70894 7.07273 7.16053 7.20508 7.36112 7.38984 7.80931 7.99878 8.10039 8.22284 8.56240 9.04531 9.61221 11.09534 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003250 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.712697 B = 8614.217683 C = 9466.605297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.059 3.941 12 C 0.064 3.936 13 N -0.530 5.530 14 C 0.134 3.866 15 C 0.234 3.766 16 N -0.470 5.470 17 C -0.024 4.024 18 C -0.055 4.055 19 N -0.415 5.415 20 C 0.122 3.878 21 C -0.119 4.119 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.099 4.099 25 C -0.114 4.114 26 C 0.060 3.940 27 C 0.068 3.932 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.075 0.925 45 H 0.040 0.960 46 H 0.030 0.970 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.502 -21.842 5.956 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.262 5.262 11 C -0.070 4.070 12 C -0.064 4.064 13 N -0.255 5.255 14 C 0.005 3.995 15 C -0.028 4.028 16 N -0.187 5.187 17 C -0.171 4.171 18 C -0.185 4.185 19 N -0.095 5.095 20 C 0.031 3.969 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.134 4.134 26 C -0.067 4.067 27 C -0.061 4.061 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.189 0.811 38 H 0.191 0.809 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.491 -21.455 5.224 23.658 hybrid contribution -0.044 0.527 0.813 0.970 sum 8.447 -20.928 6.037 23.362 Atomic orbital electron populations 1.69958 1.06079 1.26751 1.51024 1.24989 0.94846 0.99291 0.95470 0.86511 0.79782 0.83151 0.78049 1.20708 1.21289 1.19802 1.21144 0.93430 0.89921 1.50023 0.91911 1.19699 0.90061 0.87288 0.96094 1.62299 1.28091 1.02606 1.33219 1.22023 0.94704 0.89993 1.00301 1.22219 0.96199 0.98391 0.89604 1.62108 1.25380 1.02744 1.35296 1.20481 0.92093 0.84276 1.02649 1.23415 1.02321 0.96716 0.80330 1.70279 1.14672 1.06045 1.27740 1.22327 1.04223 0.98009 0.92545 1.22735 1.05811 0.93150 0.96823 1.43124 1.43079 1.18669 1.04674 1.17687 0.94318 1.02507 0.82346 1.21103 0.95055 1.00763 0.96914 1.21080 0.99833 0.98555 0.92374 1.21317 0.92781 0.98772 1.00230 1.21099 0.97580 0.97974 0.95110 1.21110 0.97969 1.00798 0.93497 1.22270 0.96224 0.87915 1.00324 1.21992 0.95467 0.97270 0.91386 0.92937 0.99041 0.95326 0.91245 0.95221 0.94415 0.91875 0.87731 0.93145 0.81074 0.80882 0.85321 0.84956 0.85180 0.84895 0.85211 0.90686 0.94157 0.95128 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 10 N -0.54 -11.91 4.70 -235.90 -1.11 -13.02 16 11 C 0.06 1.15 5.61 -3.76 -0.02 1.13 16 12 C 0.06 1.05 4.70 -3.77 -0.02 1.03 16 13 N -0.53 -8.44 4.70 -235.90 -1.11 -9.55 16 14 C 0.13 1.79 5.25 -4.97 -0.03 1.77 16 15 C 0.23 3.28 6.44 -154.67 -1.00 2.28 16 16 N -0.47 -7.16 11.24 -10.64 -0.12 -7.27 16 17 C -0.02 -0.29 11.85 -17.82 -0.21 -0.50 16 18 C -0.05 -0.60 11.29 -16.46 -0.19 -0.78 16 19 N -0.41 -5.03 2.53 -57.84 -0.15 -5.17 16 20 C 0.12 1.32 4.02 -83.58 -0.34 0.98 16 21 C -0.12 -1.16 8.39 -39.41 -0.33 -1.49 16 22 C -0.10 -0.83 10.04 -39.61 -0.40 -1.22 16 23 C -0.11 -0.89 10.04 -39.55 -0.40 -1.29 16 24 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 25 C -0.11 -1.10 9.17 -39.41 -0.36 -1.46 16 26 C 0.06 0.97 5.61 -3.76 -0.02 0.95 16 27 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.00 5.21 -51.93 -0.27 0.73 16 35 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 36 H 0.05 0.60 5.47 -51.93 -0.28 0.32 16 37 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 38 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 1.17 7.00 -52.48 -0.37 0.80 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.86 6.79 -51.93 -0.35 1.51 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -33.12 375.01 -12.36 -45.48 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.11 Total: -0.10 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.13 Total: -6.46 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -1.75 Total: -61.20 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.12 -12.36 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618289729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.860 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds