Wall clock time and date at job start Tue Mar 31 2020 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50699 * 109.46767 * 66.20188 * 14 13 12 16 16 N 1.30525 * 125.71646 * 90.02505 * 15 14 13 17 17 C 1.34119 * 109.34993 * 179.97438 * 16 15 14 18 18 C 1.34654 * 108.19863 * 0.02562 * 17 16 15 19 19 N 1.35828 * 125.71910 * 269.71966 * 15 14 13 20 20 C 1.40246 * 126.47173 * 359.97438 * 19 15 14 21 21 C 1.38810 * 120.06700 * 309.72982 * 20 19 15 22 22 C 1.38121 * 119.93699 * 179.69756 * 21 20 19 23 23 C 1.38288 * 120.06096 * 0.57786 * 22 21 20 24 24 C 1.38268 * 120.12916 * 359.72177 * 23 22 21 25 25 C 1.38132 * 120.06505 * 359.97438 * 24 23 22 26 26 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 27 27 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 28 28 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 30 30 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 31 31 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 32 32 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 33 33 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 34 34 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 35 35 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 36 36 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 37 37 H 1.08006 * 125.90101 * 179.97438 * 17 16 15 38 38 H 1.07999 * 126.58408 * 179.97438 * 18 17 16 39 39 H 1.08004 * 120.03045 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.97667 * 180.31795 * 22 21 20 41 41 H 1.08002 * 119.93007 * 179.70224 * 23 22 21 42 42 H 1.08000 * 119.96877 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.02931 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.48908 * 180.71202 * 26 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 26 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 27 10 9 47 47 H 1.09003 * 109.49032 * 56.82589 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5207 -8.4808 -0.9460 16 7 3.1401 -9.1410 -2.0057 17 6 2.4971 -10.2556 -1.6278 18 6 2.4749 -10.2925 -0.2819 19 7 3.1289 -9.1703 0.1568 20 6 3.3495 -8.8023 1.4920 21 6 4.6235 -8.4485 1.9146 22 6 4.8365 -8.0806 3.2287 23 6 3.7843 -8.0759 4.1260 24 6 2.5154 -8.4339 3.7095 25 6 2.2952 -8.7967 2.3950 26 6 4.0043 -4.7809 -1.1842 27 6 2.9687 -3.6562 -1.2558 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8897 31 1 0.9734 -4.8433 1.1788 32 1 0.8254 -5.0915 -0.5780 33 1 3.2356 -5.8353 1.1420 34 1 2.0486 -6.9718 0.4571 35 1 4.9008 -7.1180 -1.8359 36 1 4.9009 -7.1180 -0.0559 37 1 2.0700 -10.9954 -2.2888 38 1 2.0309 -11.0608 0.3337 39 1 5.4464 -8.4559 1.2151 40 1 5.8265 -7.8002 3.5569 41 1 3.9542 -7.7925 5.1542 42 1 1.6954 -8.4289 4.4124 43 1 1.3037 -9.0758 2.0702 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618289729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:02 Heat of formation + Delta-G solvation = 95.544873 kcal Electronic energy + Delta-G solvation = -28041.602365 eV Core-core repulsion = 24417.922532 eV Total energy + Delta-G solvation = -3623.679832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.39786 -40.20912 -39.95453 -36.83573 -35.06032 -34.62861 -32.33147 -31.96329 -31.57833 -30.37251 -29.54792 -27.61516 -25.49573 -24.53117 -24.12741 -23.89738 -23.25942 -21.97075 -20.92694 -20.66779 -18.98449 -18.48087 -17.58920 -17.37198 -16.75212 -16.36783 -16.24407 -15.91270 -15.82204 -15.59014 -15.45395 -15.26122 -14.96262 -14.71907 -14.53396 -14.45908 -14.05797 -13.91204 -13.72361 -13.49755 -13.06157 -12.97906 -12.69572 -12.55913 -12.53099 -12.29223 -12.24744 -12.16471 -11.97433 -11.57264 -11.33422 -11.18513 -10.98369 -10.62583 -10.05508 -9.72437 -9.52607 -9.27487 -9.08479 -8.20782 -6.31622 -0.03790 0.29382 1.04594 1.42037 1.43630 1.55224 1.68182 2.04096 2.40465 2.65981 2.95136 3.11371 3.23748 3.32940 3.72165 3.80481 3.86709 3.89173 4.11149 4.13855 4.16917 4.21338 4.30743 4.34089 4.39737 4.43480 4.50636 4.52856 4.60364 4.70780 4.73120 4.75401 4.87394 4.94825 4.96833 5.01467 5.02776 5.19741 5.23258 5.34127 5.39589 5.47889 5.62771 5.74706 5.78815 5.90108 5.93161 6.03531 6.28181 6.30595 6.56093 6.83901 7.06389 7.38326 8.90875 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003250 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.712697 B = 8614.217683 C = 9466.605297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.537 5.537 11 C 0.059 3.941 12 C 0.086 3.914 13 N -0.545 5.545 14 C 0.140 3.860 15 C 0.212 3.788 16 N -0.505 5.505 17 C -0.046 4.046 18 C -0.045 4.045 19 N -0.412 5.412 20 C 0.100 3.900 21 C -0.129 4.129 22 C -0.102 4.102 23 C -0.114 4.114 24 C -0.103 4.103 25 C -0.125 4.125 26 C 0.072 3.928 27 C 0.068 3.932 28 H 0.264 0.736 29 H -0.044 1.044 30 H 0.003 0.997 31 H 0.069 0.931 32 H 0.011 0.989 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.011 0.989 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 -22.377 7.307 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.070 4.070 12 C -0.043 4.043 13 N -0.271 5.271 14 C 0.011 3.989 15 C -0.050 4.050 16 N -0.224 5.224 17 C -0.192 4.192 18 C -0.176 4.176 19 N -0.092 5.092 20 C 0.010 3.990 21 C -0.148 4.148 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.144 4.144 26 C -0.055 4.055 27 C -0.061 4.061 28 H 0.073 0.927 29 H -0.026 1.026 30 H 0.021 0.979 31 H 0.087 0.913 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.209 0.791 38 H 0.222 0.778 39 H 0.149 0.851 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.149 0.851 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.030 0.970 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.442 -22.016 6.584 25.241 hybrid contribution -0.703 0.596 0.440 1.022 sum 9.739 -21.420 7.024 24.557 Atomic orbital electron populations 1.70098 1.07906 1.27963 1.51732 1.25958 0.95726 1.03356 0.94681 0.85337 0.78604 0.77964 0.78441 1.19835 1.20808 1.18557 1.21427 0.93695 0.90730 1.50150 0.91513 1.19360 0.90112 0.89122 0.93161 1.62256 1.27000 1.02518 1.34403 1.22084 0.95502 0.89933 0.99486 1.21947 0.95317 0.96921 0.90082 1.62036 1.26623 1.03430 1.34983 1.20484 0.91555 0.82988 1.03852 1.23408 1.03474 0.97200 0.80884 1.70215 1.15767 1.07403 1.29021 1.22772 1.04695 0.98017 0.93720 1.23269 1.04397 0.93073 0.96824 1.43206 1.42466 1.18561 1.04966 1.17899 0.95207 1.04077 0.81829 1.21245 0.94770 1.01073 0.97740 1.21395 1.01064 0.97796 0.91813 1.21678 0.92427 0.97687 1.01354 1.21402 0.98572 0.97281 0.94891 1.21243 0.97869 1.01235 0.94044 1.22143 0.94761 0.86523 1.02100 1.22008 0.95694 0.98705 0.89644 0.92676 1.02599 0.97900 0.91260 0.97098 0.94109 0.91168 0.86882 0.91453 0.79116 0.77848 0.85116 0.82841 0.82868 0.83001 0.85078 0.88096 0.93266 0.97046 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.52 -29.92 8.47 25.60 0.22 -29.70 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 9 C 0.21 11.59 4.72 85.56 0.40 12.00 16 10 N -0.54 -24.38 4.70 -900.26 -4.23 -28.61 16 11 C 0.06 2.34 5.61 86.31 0.48 2.83 16 12 C 0.09 2.74 4.70 86.31 0.41 3.15 16 13 N -0.54 -16.84 4.70 -900.24 -4.23 -21.07 16 14 C 0.14 3.53 5.25 85.55 0.45 3.98 16 15 C 0.21 5.75 6.44 137.87 0.89 6.64 16 16 N -0.51 -15.18 11.24 -187.57 -2.11 -17.29 16 17 C -0.05 -1.08 11.85 83.52 0.99 -0.09 16 18 C -0.04 -0.91 11.29 83.05 0.94 0.03 16 19 N -0.41 -9.47 2.53 -336.91 -0.85 -10.32 16 20 C 0.10 2.00 4.02 38.07 0.15 2.15 16 21 C -0.13 -2.26 8.39 22.38 0.19 -2.07 16 22 C -0.10 -1.42 10.04 22.25 0.22 -1.20 16 23 C -0.11 -1.47 10.04 22.29 0.22 -1.25 16 24 C -0.10 -1.47 10.04 22.25 0.22 -1.25 16 25 C -0.12 -2.20 9.17 22.38 0.21 -2.00 16 26 C 0.07 2.23 5.61 86.31 0.48 2.72 16 27 C 0.07 2.77 5.43 86.31 0.47 3.23 16 28 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 29 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 30 H 0.00 0.17 8.03 -2.39 -0.02 0.15 16 31 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 2.18 5.21 -2.39 -0.01 2.17 16 35 H 0.11 2.63 8.03 -2.39 -0.02 2.61 16 36 H 0.07 1.47 5.47 -2.39 -0.01 1.46 16 37 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.13 2.15 7.00 -2.91 -0.02 2.13 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.10 2.62 8.07 -2.39 -0.02 2.60 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.08 3.29 6.79 -2.39 -0.02 3.28 16 Total: -1.00 -73.07 375.01 -0.75 -73.82 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.95 Total: 14.46 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 7.41 Total: -0.33 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -11.14 Total: -134.29 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -73.07 -0.75 -73.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618289729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.367 kcal (2) G-P(sol) polarization free energy of solvation -73.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds