Wall clock time and date at job start Tue Mar 31 2020 15:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.53004 * 109.46796 * 119.99637 * 2 1 3 5 5 N 1.46900 * 109.46959 * 177.11877 * 4 2 1 6 6 C 1.46899 * 111.00009 * 160.87089 * 5 4 2 7 7 C 1.50700 * 109.47251 * 293.95915 * 6 5 4 8 8 H 1.08003 * 120.00036 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00229 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00509 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99775 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46692 * 90.00293 * 11 9 7 13 13 H 1.48504 * 109.47087 * 210.00037 * 11 9 7 14 14 H 1.48500 * 109.47137 * 330.00668 * 11 9 7 15 15 C 1.46902 * 111.00204 * 284.82912 * 5 4 2 16 16 N 1.46495 * 109.46928 * 77.97988 * 15 5 4 17 17 N 1.40178 * 126.35314 * 251.78376 * 16 15 5 18 18 C 1.29418 * 108.12987 * 179.82071 * 17 16 15 19 19 N 1.37317 * 108.83591 * 0.44989 * 18 17 16 20 20 C 1.46502 * 125.82782 * 179.73506 * 19 18 17 21 21 C 1.53004 * 109.47209 * 359.97414 * 20 19 18 22 22 C 1.53004 * 109.47296 * 119.96971 * 20 19 18 23 23 C 1.53002 * 109.47148 * 239.97557 * 20 19 18 24 24 C 1.34807 * 108.34341 * 359.71204 * 19 18 17 25 25 S 1.71202 * 126.30217 * 180.02562 * 24 19 18 26 26 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47064 * 300.00508 * 1 2 3 28 28 H 1.09002 * 109.46845 * 59.99929 * 1 2 3 29 29 H 1.08992 * 109.47221 * 239.99849 * 2 1 3 30 30 H 1.09005 * 109.46722 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.46990 * 299.99583 * 3 2 1 32 32 H 1.09002 * 109.46773 * 59.99943 * 3 2 1 33 33 H 1.08998 * 109.47330 * 297.12106 * 4 2 1 34 34 H 1.09004 * 109.46838 * 57.12508 * 4 2 1 35 35 H 1.09003 * 109.46534 * 53.95394 * 6 5 4 36 36 H 1.08993 * 109.47102 * 173.95255 * 6 5 4 37 37 H 0.97002 * 120.00186 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.46728 * 197.98050 * 15 5 4 39 39 H 1.08994 * 109.46788 * 317.97834 * 15 5 4 40 40 H 1.08001 * 125.57661 * 180.13632 * 18 17 16 41 41 H 1.09002 * 109.46917 * 59.99799 * 21 20 19 42 42 H 1.08996 * 109.47133 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.47017 * 300.00065 * 21 20 19 44 44 H 1.09000 * 109.46559 * 60.00168 * 22 20 19 45 45 H 1.08996 * 109.47051 * 179.97438 * 22 20 19 46 46 H 1.08993 * 109.47450 * 300.00417 * 22 20 19 47 47 H 1.09002 * 109.47226 * 59.99845 * 23 20 19 48 48 H 1.08994 * 109.46837 * 180.02562 * 23 20 19 49 49 H 1.09000 * 109.46374 * 299.99717 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5073 -0.7818 1.2151 6 6 4.0549 -1.0399 2.5535 7 6 3.7654 0.1362 3.4502 8 1 3.2287 0.9903 3.0642 9 6 4.1858 0.1220 4.7632 10 7 3.9336 1.1486 5.5456 11 14 5.1135 -1.3555 5.4310 12 1 6.5711 -1.1584 5.2264 13 1 4.8326 -1.5020 6.8818 14 1 4.6744 -2.5804 4.7155 15 6 3.9703 -1.7910 0.2532 16 7 3.8671 -1.2538 -1.1058 17 7 2.9373 -1.6370 -2.0824 18 6 3.1606 -0.9369 -3.1477 19 7 4.2240 -0.1002 -2.9136 20 6 4.7943 0.8504 -3.8713 21 6 4.0209 0.7727 -5.1892 22 6 4.6942 2.2679 -3.3042 23 6 6.2634 0.5035 -4.1210 24 6 4.6533 -0.3026 -1.6518 25 16 5.9556 0.5000 -0.8832 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.7194 -0.1784 2.1385 34 1 1.6351 -1.7329 1.2755 35 1 3.5927 -1.9356 2.9686 36 1 5.1327 -1.1865 2.4830 37 1 4.2297 1.1387 6.4693 38 1 5.0086 -2.0457 0.4654 39 1 3.3522 -2.6847 0.3386 40 1 2.6050 -1.0037 -4.0714 41 1 2.9743 1.0198 -5.0113 42 1 4.4455 1.4796 -5.9019 43 1 4.0922 -0.2372 -5.5933 44 1 5.2452 2.3233 -2.3654 45 1 5.1189 2.9751 -4.0166 46 1 3.6476 2.5150 -3.1264 47 1 6.3347 -0.5063 -4.5251 48 1 6.6878 1.2111 -4.8332 49 1 6.8144 0.5590 -3.1821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727818219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:23 Heat of formation + Delta-G solvation = 108.305973 kcal Electronic energy + Delta-G solvation = -28013.728785 eV Core-core repulsion = 24526.046267 eV Total energy + Delta-G solvation = -3487.682518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75554 -38.28002 -37.08921 -34.32837 -33.09045 -31.99003 -31.83797 -28.37238 -27.73692 -27.48976 -26.70491 -26.37202 -24.47337 -23.22843 -22.22157 -20.82066 -20.59188 -19.59831 -17.86533 -16.80534 -16.48314 -16.12592 -15.75040 -15.39148 -15.02596 -14.61348 -14.25459 -14.07875 -14.03280 -13.70219 -13.45821 -12.96434 -12.74338 -12.68066 -12.62521 -12.36574 -11.98310 -11.95306 -11.84912 -11.73796 -11.69524 -11.52736 -11.30401 -11.24410 -10.89731 -10.85693 -10.75394 -10.59263 -10.46779 -10.30430 -10.08313 -9.89567 -9.61662 -9.24697 -8.51523 -7.63498 -7.19936 -6.90094 -5.99507 -3.96488 1.35026 1.57904 1.69742 2.60290 2.67845 3.33946 3.39617 3.41501 4.03512 4.30110 4.43974 4.46174 4.47002 4.60328 4.74221 5.07840 5.08888 5.20148 5.31142 5.32682 5.37950 5.43009 5.46309 5.49820 5.52857 5.58837 5.62222 5.69309 5.76185 5.89794 6.03159 6.15624 6.21516 6.24668 6.30809 6.35757 6.37110 6.43441 6.55450 6.57740 6.73628 6.88173 6.95775 7.06091 7.26988 7.56338 7.80399 7.91138 8.66189 9.10008 9.60949 11.13530 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.004489 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.652690 B = 6236.408773 C = 6901.150242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.064 3.936 5 N -0.520 5.520 6 C 0.174 3.826 7 C -0.501 4.501 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.872 3.128 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.306 3.694 16 N -0.362 5.362 17 N -0.278 5.278 18 C 0.234 3.766 19 N -0.494 5.494 20 C 0.177 3.823 21 C -0.161 4.161 22 C -0.175 4.175 23 C -0.174 4.174 24 C 0.476 3.524 25 S -0.556 6.556 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.022 0.978 35 H -0.009 1.009 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.231 0.769 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -4.221 -23.919 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.192 4.192 4 C -0.063 4.063 5 N -0.244 5.244 6 C 0.048 3.952 7 C -0.539 4.539 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.699 3.301 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.194 1.194 15 C 0.095 3.905 16 N -0.156 5.156 17 N -0.098 5.098 18 C -0.066 4.066 19 N -0.197 5.197 20 C 0.095 3.905 21 C -0.219 4.219 22 C -0.234 4.234 23 C -0.233 4.233 24 C 0.117 3.883 25 S -0.427 6.427 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.040 0.960 35 H 0.009 0.991 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.247 0.753 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.862 -4.024 -22.848 23.375 hybrid contribution -0.294 -1.336 -0.116 1.373 sum -3.155 -5.360 -22.964 23.791 Atomic orbital electron populations 1.21761 0.96122 1.00798 1.01141 1.21458 0.94452 0.97524 0.99120 1.21696 1.03132 0.94796 0.99575 1.22244 0.86874 0.98020 0.99193 1.61455 1.08677 1.45005 1.09259 1.20136 0.95105 0.96884 0.83057 1.20893 1.36784 1.02587 0.93684 0.89930 1.24833 0.95673 0.95752 0.96778 1.69883 1.47086 1.29989 1.06814 0.86923 0.81097 0.83803 0.78256 1.19970 1.21347 1.19375 1.22230 1.02849 0.91088 0.74285 1.49892 1.22707 1.30991 1.12047 1.77023 1.13486 1.22422 0.96856 1.26261 0.90870 0.89657 0.99804 1.46595 1.27044 1.34145 1.11952 1.20881 0.94744 0.88419 0.86460 1.22244 1.00770 1.03494 0.95352 1.22430 1.03441 0.92486 1.05042 1.22426 0.93801 1.01454 1.05606 1.23742 0.92935 0.87699 0.83883 1.93361 1.21616 1.58302 1.69421 0.93421 0.92707 0.93600 0.90900 0.90691 0.95445 0.92889 0.88609 0.96035 0.99095 0.94813 0.92706 0.87204 0.90946 0.75287 0.91370 0.89500 0.91502 0.87716 0.90747 0.92418 0.92697 0.90653 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 2 C -0.11 -1.75 2.73 -90.61 -0.25 -2.00 16 3 C -0.13 -2.43 9.06 37.16 0.34 -2.09 16 4 C 0.06 1.22 4.23 -3.82 -0.02 1.21 16 5 N -0.52 -10.56 3.93 -239.98 -0.94 -11.50 16 6 C 0.17 4.10 3.76 -4.98 -0.02 4.08 16 7 C -0.50 -14.08 8.79 -34.44 -0.30 -14.38 16 8 H 0.08 2.56 7.55 -52.48 -0.40 2.16 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 11 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.31 5.24 5.84 -63.32 -0.37 4.87 16 16 N -0.36 -5.63 2.46 -65.00 -0.16 -5.79 16 17 N -0.28 -3.55 10.21 29.86 0.30 -3.24 16 18 C 0.23 2.24 11.45 -89.15 -1.02 1.22 16 19 N -0.49 -5.70 2.61 -105.27 -0.28 -5.97 16 20 C 0.18 1.61 1.06 -131.81 -0.14 1.47 16 21 C -0.16 -0.82 7.35 37.16 0.27 -0.54 16 22 C -0.18 -1.84 8.49 37.16 0.32 -1.52 16 23 C -0.17 -1.64 8.49 37.16 0.32 -1.32 16 24 C 0.48 7.51 7.12 -86.74 -0.62 6.90 16 25 S -0.56 -10.93 26.00 -107.50 -2.80 -13.73 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.15 3.76 -51.93 -0.20 0.95 16 30 H 0.07 1.57 7.44 -51.93 -0.39 1.19 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 2.10 6.58 -51.93 -0.34 1.76 16 34 H 0.02 0.39 7.72 -51.93 -0.40 -0.01 16 35 H -0.01 -0.20 7.18 -51.93 -0.37 -0.57 16 36 H 0.03 0.82 7.24 -51.93 -0.38 0.44 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.11 1.91 7.69 -51.93 -0.40 1.52 16 39 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 40 H 0.23 1.02 7.13 -52.49 -0.37 0.65 16 41 H 0.07 0.31 7.85 -51.93 -0.41 -0.10 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.26 7.85 -51.93 -0.41 -0.14 16 44 H 0.10 1.50 5.79 -51.93 -0.30 1.20 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.10 1.32 5.79 -51.93 -0.30 1.02 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -33.68 387.42 -11.63 -45.31 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.45 Total: 0.95 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.25 Total: -1.81 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.30 Total: -53.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -2.80 Total: -13.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.68 -11.63 -45.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727818219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.612 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds