Wall clock time and date at job start Tue Mar 31 2020 15:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.53004 * 109.46796 * 119.99637 * 2 1 3 5 5 N 1.46900 * 109.46959 * 177.11877 * 4 2 1 6 6 C 1.46899 * 111.00009 * 160.87089 * 5 4 2 7 7 C 1.50700 * 109.47251 * 293.95915 * 6 5 4 8 8 H 1.08003 * 120.00036 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00229 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00509 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99775 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46692 * 90.00293 * 11 9 7 13 13 H 1.48504 * 109.47087 * 210.00037 * 11 9 7 14 14 H 1.48500 * 109.47137 * 330.00668 * 11 9 7 15 15 C 1.46902 * 111.00204 * 284.82912 * 5 4 2 16 16 N 1.46495 * 109.46928 * 77.97988 * 15 5 4 17 17 N 1.40178 * 126.35314 * 251.78376 * 16 15 5 18 18 C 1.29418 * 108.12987 * 179.82071 * 17 16 15 19 19 N 1.37317 * 108.83591 * 0.44989 * 18 17 16 20 20 C 1.46502 * 125.82782 * 179.73506 * 19 18 17 21 21 C 1.53004 * 109.47209 * 359.97414 * 20 19 18 22 22 C 1.53004 * 109.47296 * 119.96971 * 20 19 18 23 23 C 1.53002 * 109.47148 * 239.97557 * 20 19 18 24 24 C 1.34807 * 108.34341 * 359.71204 * 19 18 17 25 25 S 1.71202 * 126.30217 * 180.02562 * 24 19 18 26 26 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47064 * 300.00508 * 1 2 3 28 28 H 1.09002 * 109.46845 * 59.99929 * 1 2 3 29 29 H 1.08992 * 109.47221 * 239.99849 * 2 1 3 30 30 H 1.09005 * 109.46722 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.46990 * 299.99583 * 3 2 1 32 32 H 1.09002 * 109.46773 * 59.99943 * 3 2 1 33 33 H 1.08998 * 109.47330 * 297.12106 * 4 2 1 34 34 H 1.09004 * 109.46838 * 57.12508 * 4 2 1 35 35 H 1.09003 * 109.46534 * 53.95394 * 6 5 4 36 36 H 1.08993 * 109.47102 * 173.95255 * 6 5 4 37 37 H 0.97002 * 120.00186 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.46728 * 197.98050 * 15 5 4 39 39 H 1.08994 * 109.46788 * 317.97834 * 15 5 4 40 40 H 1.08001 * 125.57661 * 180.13632 * 18 17 16 41 41 H 1.09002 * 109.46917 * 59.99799 * 21 20 19 42 42 H 1.08996 * 109.47133 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.47017 * 300.00065 * 21 20 19 44 44 H 1.09000 * 109.46559 * 60.00168 * 22 20 19 45 45 H 1.08996 * 109.47051 * 179.97438 * 22 20 19 46 46 H 1.08993 * 109.47450 * 300.00417 * 22 20 19 47 47 H 1.09002 * 109.47226 * 59.99845 * 23 20 19 48 48 H 1.08994 * 109.46837 * 180.02562 * 23 20 19 49 49 H 1.09000 * 109.46374 * 299.99717 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5073 -0.7818 1.2151 6 6 4.0549 -1.0399 2.5535 7 6 3.7654 0.1362 3.4502 8 1 3.2287 0.9903 3.0642 9 6 4.1858 0.1220 4.7632 10 7 3.9336 1.1486 5.5456 11 14 5.1135 -1.3555 5.4310 12 1 6.5711 -1.1584 5.2264 13 1 4.8326 -1.5020 6.8818 14 1 4.6744 -2.5804 4.7155 15 6 3.9703 -1.7910 0.2532 16 7 3.8671 -1.2538 -1.1058 17 7 2.9373 -1.6370 -2.0824 18 6 3.1606 -0.9369 -3.1477 19 7 4.2240 -0.1002 -2.9136 20 6 4.7943 0.8504 -3.8713 21 6 4.0209 0.7727 -5.1892 22 6 4.6942 2.2679 -3.3042 23 6 6.2634 0.5035 -4.1210 24 6 4.6533 -0.3026 -1.6518 25 16 5.9556 0.5000 -0.8832 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.7194 -0.1784 2.1385 34 1 1.6351 -1.7329 1.2755 35 1 3.5927 -1.9356 2.9686 36 1 5.1327 -1.1865 2.4830 37 1 4.2297 1.1387 6.4693 38 1 5.0086 -2.0457 0.4654 39 1 3.3522 -2.6847 0.3386 40 1 2.6050 -1.0037 -4.0714 41 1 2.9743 1.0198 -5.0113 42 1 4.4455 1.4796 -5.9019 43 1 4.0922 -0.2372 -5.5933 44 1 5.2452 2.3233 -2.3654 45 1 5.1189 2.9751 -4.0166 46 1 3.6476 2.5150 -3.1264 47 1 6.3347 -0.5063 -4.5251 48 1 6.6878 1.2111 -4.8332 49 1 6.8144 0.5590 -3.1821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727818219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:22 Heat of formation + Delta-G solvation = 89.176181 kcal Electronic energy + Delta-G solvation = -28014.558315 eV Core-core repulsion = 24526.046267 eV Total energy + Delta-G solvation = -3488.512048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.83583 -39.58716 -38.16424 -35.78131 -34.82446 -33.58912 -32.87395 -29.97617 -28.71071 -28.29514 -28.00773 -27.68935 -25.98960 -24.38092 -23.45915 -22.45291 -21.65591 -21.02611 -19.13607 -18.64690 -17.67899 -17.32507 -16.88289 -16.61198 -16.38411 -15.99243 -15.89995 -15.26146 -14.98385 -14.91469 -14.82799 -14.51109 -14.00517 -13.86855 -13.58811 -13.45565 -13.26737 -13.12170 -13.04436 -12.80688 -12.72750 -12.69267 -12.65165 -12.49103 -12.40336 -12.23847 -12.02757 -11.99409 -11.85035 -11.72086 -11.59524 -11.51195 -11.47715 -10.85094 -10.74091 -9.23147 -8.62071 -8.37034 -8.24743 -6.26938 0.10816 0.39959 0.81319 1.33258 1.35692 1.38841 1.46411 1.70405 2.36191 2.96651 3.09909 3.19256 3.58125 3.72874 3.80751 3.88342 3.94889 3.99624 4.06668 4.13476 4.23460 4.32161 4.54019 4.66477 4.68518 4.71276 4.71621 4.78596 4.82377 4.82906 4.89718 4.92104 4.93185 4.95540 5.02055 5.04875 5.12184 5.21135 5.22530 5.43129 5.45480 5.49643 5.52158 5.54610 5.65863 5.91625 6.15525 6.31655 6.56726 6.77897 7.34502 8.92194 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.004489 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.652690 B = 6236.408773 C = 6901.150242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.123 4.123 4 C 0.069 3.931 5 N -0.537 5.537 6 C 0.187 3.813 7 C -0.501 4.501 8 H 0.034 0.966 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.944 3.056 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.242 1.242 15 C 0.310 3.690 16 N -0.367 5.367 17 N -0.295 5.295 18 C 0.261 3.739 19 N -0.483 5.483 20 C 0.172 3.828 21 C -0.155 4.155 22 C -0.173 4.173 23 C -0.171 4.171 24 C 0.488 3.512 25 S -0.655 6.655 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.003 0.997 36 H 0.028 0.972 37 H 0.265 0.735 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.292 0.708 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 -6.854 -28.153 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.181 4.181 4 C -0.059 4.059 5 N -0.261 5.261 6 C 0.060 3.940 7 C -0.540 4.540 8 H 0.052 0.948 9 C -0.188 4.188 10 N -0.591 5.591 11 Si 0.768 3.232 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.165 1.165 15 C 0.099 3.901 16 N -0.158 5.158 17 N -0.114 5.114 18 C -0.038 4.038 19 N -0.184 5.184 20 C 0.091 3.909 21 C -0.212 4.212 22 C -0.232 4.232 23 C -0.230 4.230 24 C 0.124 3.876 25 S -0.527 6.527 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.021 0.979 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.307 0.693 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.116 0.884 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.621 -6.669 -27.155 28.341 hybrid contribution 0.158 -0.422 1.002 1.098 sum -4.462 -7.090 -26.153 27.462 Atomic orbital electron populations 1.21710 0.93793 1.02024 1.01673 1.21435 0.96254 0.95761 0.98306 1.21552 1.00800 0.96375 0.99323 1.22185 0.86193 0.98613 0.98899 1.61253 1.09461 1.47084 1.08301 1.19798 0.94895 0.94977 0.84327 1.21075 1.35627 1.02645 0.94648 0.94781 1.25775 0.96789 0.99117 0.97102 1.70053 1.49006 1.32696 1.07331 0.85770 0.79206 0.80533 0.77731 1.19892 1.20798 1.16548 1.22102 1.02819 0.90864 0.74291 1.49695 1.23259 1.30704 1.12162 1.77091 1.13302 1.23921 0.97116 1.27525 0.88980 0.86683 1.00566 1.46883 1.26897 1.34042 1.10540 1.21252 0.95376 0.86673 0.87636 1.22288 1.00867 1.05583 0.92460 1.22364 1.02600 0.94504 1.03730 1.22360 0.93795 1.02704 1.04109 1.23122 0.91962 0.87229 0.85288 1.93535 1.25737 1.61573 1.71860 0.91809 0.94028 0.91282 0.89224 0.94098 0.93016 0.95643 0.92700 0.94318 0.97947 0.95373 0.92612 0.88046 0.88424 0.69257 0.89861 0.87702 0.89259 0.92141 0.88343 0.92671 0.91796 0.88385 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.19 71.98 0.66 -2.84 16 2 C -0.10 -3.15 2.73 -10.79 -0.03 -3.18 16 3 C -0.12 -4.56 9.06 71.98 0.65 -3.91 16 4 C 0.07 2.64 4.23 86.30 0.36 3.01 16 5 N -0.54 -22.36 3.93 -913.17 -3.59 -25.95 16 6 C 0.19 9.05 3.76 85.56 0.32 9.37 16 7 C -0.50 -29.81 8.79 25.60 0.23 -29.59 16 8 H 0.03 2.30 7.55 -2.91 -0.02 2.28 16 9 C 0.01 0.54 5.47 84.65 0.46 1.01 16 10 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 11 Si 0.94 45.37 27.47 68.60 1.88 47.25 16 12 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 15 C 0.31 10.44 5.84 170.81 1.00 11.44 16 16 N -0.37 -10.89 2.46 -359.56 -0.88 -11.78 16 17 N -0.29 -6.37 10.21 -59.43 -0.61 -6.97 16 18 C 0.26 3.66 11.45 179.83 2.06 5.72 16 19 N -0.48 -9.84 2.61 -486.96 -1.27 -11.11 16 20 C 0.17 2.62 1.06 3.61 0.00 2.62 16 21 C -0.15 -0.67 7.35 71.98 0.53 -0.14 16 22 C -0.17 -3.47 8.49 71.98 0.61 -2.86 16 23 C -0.17 -2.93 8.49 71.98 0.61 -2.32 16 24 C 0.49 15.24 7.12 178.99 1.27 16.51 16 25 S -0.66 -27.53 26.00 -56.49 -1.47 -29.00 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 2.58 3.76 -2.39 -0.01 2.57 16 30 H 0.04 1.80 7.44 -2.38 -0.02 1.78 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 2.55 6.58 -2.39 -0.02 2.53 16 34 H 0.04 1.34 7.72 -2.38 -0.02 1.32 16 35 H 0.00 0.13 7.18 -2.39 -0.02 0.12 16 36 H 0.03 1.40 7.24 -2.39 -0.02 1.38 16 37 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.10 3.57 7.69 -2.39 -0.02 3.56 16 39 H 0.10 2.80 7.69 -2.39 -0.02 2.78 16 40 H 0.29 0.21 7.13 -2.91 -0.02 0.19 16 41 H 0.08 0.18 7.85 -2.39 -0.02 0.16 16 42 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.09 0.06 7.85 -2.39 -0.02 0.05 16 44 H 0.06 1.83 5.79 -2.39 -0.01 1.82 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.67 5.79 -2.39 -0.01 1.66 16 Total: -1.00 -83.65 387.42 3.97 -79.68 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.86 Total: 14.19 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 8.75 Total: 4.84 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -6.05 Total: -116.97 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Atomic # 16 Polarization: -27.53 SS G_CDS: -1.47 Total: -29.00 kcal Total: -83.65 3.97 -79.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727818219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.859 kcal (2) G-P(sol) polarization free energy of solvation -83.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds