Wall clock time and date at job start Tue Mar 31 2020 15:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46891 * 2 1 4 4 C 1.52997 * 109.47110 * 172.88242 * 3 2 1 5 5 C 1.53002 * 109.47081 * 185.00003 * 4 3 2 6 6 C 1.53005 * 109.47190 * 292.88161 * 3 2 1 7 7 N 1.46899 * 109.47242 * 67.03710 * 6 3 2 8 8 C 1.46901 * 111.00252 * 87.02634 * 7 6 3 9 9 C 1.50697 * 109.47100 * 285.25844 * 8 7 6 10 10 H 1.07997 * 120.00253 * 358.44464 * 9 8 7 11 11 C 1.37874 * 119.99904 * 178.44920 * 9 8 7 12 12 N 1.31515 * 119.99944 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99998 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47154 * 90.00188 * 13 11 9 15 15 H 1.48507 * 109.46910 * 209.99591 * 13 11 9 16 16 H 1.48493 * 109.47416 * 329.99647 * 13 11 9 17 17 C 1.46899 * 110.99990 * 210.98589 * 7 6 3 18 18 N 1.46501 * 109.47312 * 66.04312 * 17 7 6 19 19 N 1.40169 * 126.35392 * 269.97591 * 18 17 7 20 20 C 1.29416 * 108.13533 * 180.02562 * 19 18 17 21 21 N 1.37323 * 108.83159 * 359.97438 * 20 19 18 22 22 C 1.46502 * 125.82345 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.46955 * 265.02348 * 22 21 20 24 24 C 1.34816 * 108.34356 * 0.02562 * 21 20 19 25 25 S 1.71193 * 126.29928 * 180.02562 * 24 21 20 26 26 H 1.08998 * 109.47313 * 298.71715 * 1 2 3 27 27 H 1.09000 * 109.47380 * 58.71797 * 1 2 3 28 28 H 1.09007 * 109.47101 * 178.71884 * 1 2 3 29 29 H 1.08995 * 109.47015 * 240.00186 * 2 1 3 30 30 H 1.08998 * 109.47254 * 119.99789 * 2 1 3 31 31 H 1.09003 * 109.47286 * 52.88145 * 3 2 1 32 32 H 1.08995 * 109.47289 * 304.99907 * 4 3 2 33 33 H 1.09001 * 109.47524 * 64.99775 * 4 3 2 34 34 H 1.08999 * 109.47308 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47430 * 299.99593 * 5 4 3 36 36 H 1.08997 * 109.47393 * 59.99943 * 5 4 3 37 37 H 1.09000 * 109.46799 * 307.03547 * 6 3 2 38 38 H 1.08993 * 109.47217 * 187.03907 * 6 3 2 39 39 H 1.09000 * 109.46652 * 45.25758 * 8 7 6 40 40 H 1.08998 * 109.46779 * 165.25322 * 8 7 6 41 41 H 0.97004 * 119.99907 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47041 * 306.04505 * 17 7 6 43 43 H 1.09004 * 109.46713 * 186.04341 * 17 7 6 44 44 H 1.07998 * 125.58194 * 180.26633 * 20 19 18 45 45 H 1.08990 * 109.47485 * 25.02755 * 22 21 20 46 46 H 1.09000 * 109.46531 * 145.02791 * 22 21 20 47 47 H 1.08997 * 109.47521 * 300.00152 * 23 22 21 48 48 H 1.09000 * 109.47140 * 60.00815 * 23 22 21 49 49 H 1.09000 * 109.46772 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5594 1.4463 0.1787 5 6 4.0546 2.8885 0.3037 6 6 1.6811 2.1103 -1.3290 7 7 0.2227 2.2587 -1.4245 8 6 -0.2210 3.5120 -0.7997 9 6 -0.1629 3.3739 0.6998 10 1 0.1462 2.4395 1.1444 11 6 -0.5046 4.4403 1.5040 12 7 -0.8807 5.5783 0.9625 13 14 -0.4333 4.2689 3.3628 14 1 0.9164 4.6582 3.8444 15 1 -1.4535 5.1535 3.9809 16 1 -0.7063 2.8591 3.7407 17 6 -0.2241 2.1798 -2.8216 18 7 0.0236 0.8315 -3.3382 19 7 1.1894 0.3879 -3.9777 20 6 1.0296 -0.8584 -4.2875 21 7 -0.2150 -1.2627 -3.8710 22 6 -0.7801 -2.6043 -4.0347 23 6 -1.6324 -2.6473 -5.3046 24 6 -0.8283 -0.2138 -3.2868 25 16 -2.3983 -0.2092 -2.6045 26 1 -0.3634 0.4938 0.9012 27 1 -0.3634 0.5336 -0.8783 28 1 -0.3634 -1.0275 -0.0230 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5763 1.9918 0.8195 32 1 3.8205 0.8930 1.0808 33 1 4.0281 0.9747 -0.6850 34 1 5.1371 2.8912 0.4315 35 1 3.7936 3.4418 -0.5984 36 1 3.5861 3.3601 1.1675 37 1 2.0383 1.4935 -2.1537 38 1 2.1503 3.0927 -1.3804 39 1 0.4316 4.3261 -1.1152 40 1 -1.2448 3.7277 -1.1055 41 1 -1.1208 6.3288 1.5284 42 1 0.3264 2.9052 -3.4206 43 1 -1.2906 2.3991 -2.8749 44 1 1.7578 -1.4801 -4.7871 45 1 0.0277 -3.3316 -4.1145 46 1 -1.4013 -2.8446 -3.1718 47 1 -2.4403 -1.9200 -5.2247 48 1 -1.0112 -2.4070 -6.1674 49 1 -2.0532 -3.6454 -5.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729470336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:21 Heat of formation + Delta-G solvation = 103.081042 kcal Electronic energy + Delta-G solvation = -28033.941615 eV Core-core repulsion = 24546.032527 eV Total energy + Delta-G solvation = -3487.909088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61364 -38.28205 -36.08674 -34.72813 -32.92104 -31.95549 -31.36810 -30.85873 -27.61094 -27.41936 -25.50007 -24.40416 -23.67950 -22.58501 -22.26113 -21.27623 -20.75848 -19.32744 -18.11478 -16.67792 -16.52618 -16.27466 -15.85777 -15.25758 -15.00478 -14.70693 -14.37828 -14.22893 -14.05758 -13.40487 -13.28025 -13.06421 -12.56186 -12.46834 -12.33875 -12.01966 -11.92559 -11.80682 -11.66235 -11.46483 -11.22342 -11.00284 -10.96501 -10.89998 -10.83189 -10.76216 -10.50255 -10.42027 -10.35599 -10.13768 -9.85898 -9.70937 -9.45909 -8.80765 -8.37464 -7.39084 -7.23598 -7.18531 -6.01180 -4.00384 1.29909 1.52385 1.68313 2.55296 2.65327 3.33657 3.41076 3.46003 4.12893 4.35041 4.42636 4.56712 4.68973 4.73887 4.97612 5.09612 5.31241 5.34700 5.37163 5.41448 5.49075 5.64008 5.65616 5.73996 5.81126 5.86747 6.01301 6.07171 6.16152 6.17435 6.22799 6.34340 6.40588 6.47845 6.50028 6.63770 6.70763 6.77852 6.94480 7.02062 7.14830 7.17617 7.25784 7.29135 7.80751 7.86759 7.96520 8.09416 8.43473 9.05785 9.62484 11.09541 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.004635 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.010109 B = 6040.054462 C = 6835.324166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.099 4.099 4 C -0.114 4.114 5 C -0.150 4.150 6 C 0.067 3.933 7 N -0.529 5.529 8 C 0.200 3.800 9 C -0.500 4.500 10 H 0.079 0.921 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.890 3.110 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.302 3.698 18 N -0.360 5.360 19 N -0.277 5.277 20 C 0.236 3.764 21 N -0.502 5.502 22 C 0.115 3.885 23 C -0.170 4.170 24 C 0.472 3.528 25 S -0.572 6.572 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.014 0.986 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.001 0.999 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.124 0.876 44 H 0.234 0.766 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.279 -14.993 -12.788 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.134 4.134 3 C -0.117 4.117 4 C -0.152 4.152 5 C -0.207 4.207 6 C -0.061 4.061 7 N -0.255 5.255 8 C 0.076 3.924 9 C -0.539 4.539 10 H 0.097 0.903 11 C -0.143 4.143 12 N -0.538 5.538 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.196 1.196 17 C 0.092 3.908 18 N -0.153 5.153 19 N -0.096 5.096 20 C -0.065 4.065 21 N -0.204 5.204 22 C -0.006 4.006 23 C -0.228 4.228 24 C 0.113 3.887 25 S -0.444 6.444 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.142 0.858 44 H 0.250 0.750 45 H 0.116 0.884 46 H 0.128 0.872 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.708 -14.241 -12.081 19.844 hybrid contribution 0.972 -0.076 0.306 1.022 sum 7.680 -14.317 -11.775 20.065 Atomic orbital electron populations 1.22344 0.93803 0.98997 1.07034 1.21345 0.97977 0.95739 0.98298 1.21591 0.93409 0.96450 1.00241 1.21518 0.96660 0.96700 1.00311 1.21785 0.99269 0.97040 1.02617 1.22187 0.87552 0.99079 0.97262 1.62220 1.12192 1.40712 1.10349 1.19818 0.95763 0.81824 0.94999 1.21281 1.44226 0.98444 0.89904 0.90297 1.24932 0.95492 0.95300 0.98604 1.69944 1.45926 1.02648 1.35238 0.86607 0.77603 0.78245 0.85737 1.20840 1.21298 1.19644 1.22441 1.03113 0.74320 0.90923 1.49754 1.08634 1.11597 1.45357 1.77124 1.07466 1.10446 1.14585 1.26376 0.88555 0.92809 0.98725 1.46383 1.13552 1.12450 1.48044 1.21936 0.99093 0.77808 1.01777 1.22142 1.00857 1.03989 0.95820 1.23834 0.95073 0.82147 0.87643 1.93450 0.98633 1.91916 1.60408 0.92933 0.86270 0.96709 0.95318 0.94439 0.86859 0.92795 0.93508 0.94011 0.92633 0.92169 0.92622 0.94151 0.98132 0.94829 0.92989 0.91533 0.85835 0.74982 0.88441 0.87175 0.90638 0.92373 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.06 37.16 0.34 -3.00 16 2 C -0.10 -1.72 5.39 -26.73 -0.14 -1.86 16 3 C -0.10 -1.81 1.88 -90.62 -0.17 -1.98 16 4 C -0.11 -1.79 5.40 -26.73 -0.14 -1.93 16 5 C -0.15 -2.35 9.68 37.16 0.36 -1.99 16 6 C 0.07 1.24 4.20 -3.82 -0.02 1.22 16 7 N -0.53 -10.55 1.35 -239.98 -0.33 -10.88 16 8 C 0.20 4.82 4.73 -4.98 -0.02 4.80 16 9 C -0.50 -13.15 8.03 -34.44 -0.28 -13.43 16 10 H 0.08 2.07 3.74 -52.49 -0.20 1.87 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 C 0.30 5.30 5.66 -63.31 -0.36 4.94 16 18 N -0.36 -5.61 3.10 -64.99 -0.20 -5.81 16 19 N -0.28 -3.56 10.99 29.86 0.33 -3.24 16 20 C 0.24 2.13 12.65 -89.14 -1.13 1.00 16 21 N -0.50 -5.46 2.74 -119.23 -0.33 -5.79 16 22 C 0.12 0.87 6.54 -4.04 -0.03 0.84 16 23 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 24 C 0.47 7.33 6.84 -86.73 -0.59 6.73 16 25 S -0.57 -11.03 28.95 -107.50 -3.11 -14.14 16 26 H 0.05 1.19 6.91 -51.93 -0.36 0.83 16 27 H 0.12 2.45 2.53 -51.93 -0.13 2.32 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 2.48 4.51 -51.93 -0.23 2.25 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.89 6.42 -51.93 -0.33 0.56 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.96 5.83 -51.93 -0.30 0.66 16 38 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 39 H 0.00 0.02 7.66 -51.93 -0.40 -0.37 16 40 H 0.03 0.88 7.75 -51.93 -0.40 0.47 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 43 H 0.12 2.30 7.39 -51.93 -0.38 1.92 16 44 H 0.23 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.10 0.38 8.13 -51.93 -0.42 -0.04 16 46 H 0.11 1.03 7.80 -51.93 -0.41 0.63 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -32.38 387.22 -12.05 -44.44 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.07 Total: 2.15 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.90 Total: -3.94 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.21 Total: -50.82 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -3.11 Total: -14.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.38 -12.05 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729470336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.519 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds