Wall clock time and date at job start Tue Mar 31 2020 15:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46891 * 2 1 4 4 C 1.52997 * 109.47110 * 172.88242 * 3 2 1 5 5 C 1.53002 * 109.47081 * 185.00003 * 4 3 2 6 6 C 1.53005 * 109.47190 * 292.88161 * 3 2 1 7 7 N 1.46899 * 109.47242 * 67.03710 * 6 3 2 8 8 C 1.46901 * 111.00252 * 87.02634 * 7 6 3 9 9 C 1.50697 * 109.47100 * 285.25844 * 8 7 6 10 10 H 1.07997 * 120.00253 * 358.44464 * 9 8 7 11 11 C 1.37874 * 119.99904 * 178.44920 * 9 8 7 12 12 N 1.31515 * 119.99944 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99998 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47154 * 90.00188 * 13 11 9 15 15 H 1.48507 * 109.46910 * 209.99591 * 13 11 9 16 16 H 1.48493 * 109.47416 * 329.99647 * 13 11 9 17 17 C 1.46899 * 110.99990 * 210.98589 * 7 6 3 18 18 N 1.46501 * 109.47312 * 66.04312 * 17 7 6 19 19 N 1.40169 * 126.35392 * 269.97591 * 18 17 7 20 20 C 1.29416 * 108.13533 * 180.02562 * 19 18 17 21 21 N 1.37323 * 108.83159 * 359.97438 * 20 19 18 22 22 C 1.46502 * 125.82345 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.46955 * 265.02348 * 22 21 20 24 24 C 1.34816 * 108.34356 * 0.02562 * 21 20 19 25 25 S 1.71193 * 126.29928 * 180.02562 * 24 21 20 26 26 H 1.08998 * 109.47313 * 298.71715 * 1 2 3 27 27 H 1.09000 * 109.47380 * 58.71797 * 1 2 3 28 28 H 1.09007 * 109.47101 * 178.71884 * 1 2 3 29 29 H 1.08995 * 109.47015 * 240.00186 * 2 1 3 30 30 H 1.08998 * 109.47254 * 119.99789 * 2 1 3 31 31 H 1.09003 * 109.47286 * 52.88145 * 3 2 1 32 32 H 1.08995 * 109.47289 * 304.99907 * 4 3 2 33 33 H 1.09001 * 109.47524 * 64.99775 * 4 3 2 34 34 H 1.08999 * 109.47308 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47430 * 299.99593 * 5 4 3 36 36 H 1.08997 * 109.47393 * 59.99943 * 5 4 3 37 37 H 1.09000 * 109.46799 * 307.03547 * 6 3 2 38 38 H 1.08993 * 109.47217 * 187.03907 * 6 3 2 39 39 H 1.09000 * 109.46652 * 45.25758 * 8 7 6 40 40 H 1.08998 * 109.46779 * 165.25322 * 8 7 6 41 41 H 0.97004 * 119.99907 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47041 * 306.04505 * 17 7 6 43 43 H 1.09004 * 109.46713 * 186.04341 * 17 7 6 44 44 H 1.07998 * 125.58194 * 180.26633 * 20 19 18 45 45 H 1.08990 * 109.47485 * 25.02755 * 22 21 20 46 46 H 1.09000 * 109.46531 * 145.02791 * 22 21 20 47 47 H 1.08997 * 109.47521 * 300.00152 * 23 22 21 48 48 H 1.09000 * 109.47140 * 60.00815 * 23 22 21 49 49 H 1.09000 * 109.46772 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5594 1.4463 0.1787 5 6 4.0546 2.8885 0.3037 6 6 1.6811 2.1103 -1.3290 7 7 0.2227 2.2587 -1.4245 8 6 -0.2210 3.5120 -0.7997 9 6 -0.1629 3.3739 0.6998 10 1 0.1462 2.4395 1.1444 11 6 -0.5046 4.4403 1.5040 12 7 -0.8807 5.5783 0.9625 13 14 -0.4333 4.2689 3.3628 14 1 0.9164 4.6582 3.8444 15 1 -1.4535 5.1535 3.9809 16 1 -0.7063 2.8591 3.7407 17 6 -0.2241 2.1798 -2.8216 18 7 0.0236 0.8315 -3.3382 19 7 1.1894 0.3879 -3.9777 20 6 1.0296 -0.8584 -4.2875 21 7 -0.2150 -1.2627 -3.8710 22 6 -0.7801 -2.6043 -4.0347 23 6 -1.6324 -2.6473 -5.3046 24 6 -0.8283 -0.2138 -3.2868 25 16 -2.3983 -0.2092 -2.6045 26 1 -0.3634 0.4938 0.9012 27 1 -0.3634 0.5336 -0.8783 28 1 -0.3634 -1.0275 -0.0230 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5763 1.9918 0.8195 32 1 3.8205 0.8930 1.0808 33 1 4.0281 0.9747 -0.6850 34 1 5.1371 2.8912 0.4315 35 1 3.7936 3.4418 -0.5984 36 1 3.5861 3.3601 1.1675 37 1 2.0383 1.4935 -2.1537 38 1 2.1503 3.0927 -1.3804 39 1 0.4316 4.3261 -1.1152 40 1 -1.2448 3.7277 -1.1055 41 1 -1.1208 6.3288 1.5284 42 1 0.3264 2.9052 -3.4206 43 1 -1.2906 2.3991 -2.8749 44 1 1.7578 -1.4801 -4.7871 45 1 0.0277 -3.3316 -4.1145 46 1 -1.4013 -2.8446 -3.1718 47 1 -2.4403 -1.9200 -5.2247 48 1 -1.0112 -2.4070 -6.1674 49 1 -2.0532 -3.6454 -5.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729470336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:20 Heat of formation + Delta-G solvation = 88.141022 kcal Electronic energy + Delta-G solvation = -28034.589463 eV Core-core repulsion = 24546.032527 eV Total energy + Delta-G solvation = -3488.556936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.68662 -39.81094 -37.17393 -36.07905 -34.71416 -33.37133 -32.79256 -31.69977 -29.44277 -28.83985 -26.96160 -25.67517 -24.86671 -23.93973 -23.21075 -22.68198 -22.38108 -20.84702 -19.25277 -18.27136 -17.87274 -17.47151 -17.11976 -16.70410 -16.38766 -16.14586 -15.72412 -15.52358 -14.98963 -14.73933 -14.72167 -14.30358 -14.07508 -13.88024 -13.53077 -13.34142 -13.25563 -13.21750 -12.96215 -12.86903 -12.77715 -12.61278 -12.37094 -12.35797 -12.21182 -12.13364 -12.12075 -11.91478 -11.58514 -11.53012 -11.34966 -11.31383 -11.06549 -10.64912 -10.45973 -8.93185 -8.80063 -8.64238 -8.13540 -6.17788 0.06585 0.33301 0.86529 1.25896 1.38475 1.41266 1.51059 1.74523 2.42099 3.09697 3.15451 3.20737 3.71240 3.83064 3.96550 4.00037 4.10730 4.11446 4.21034 4.28072 4.40163 4.45075 4.46070 4.53613 4.67434 4.72190 4.81794 4.85126 4.86561 4.94372 5.01080 5.05958 5.08896 5.12842 5.19585 5.26653 5.30843 5.32019 5.36189 5.44824 5.54797 5.58209 5.61749 5.92898 6.08208 6.16737 6.23844 6.30026 6.47684 6.95776 7.48479 8.97012 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.004635 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.010109 B = 6040.054462 C = 6835.324166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C -0.098 4.098 4 C -0.106 4.106 5 C -0.148 4.148 6 C 0.075 3.925 7 N -0.532 5.532 8 C 0.219 3.781 9 C -0.500 4.500 10 H 0.080 0.920 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.947 3.053 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.308 3.692 18 N -0.365 5.365 19 N -0.305 5.305 20 C 0.270 3.730 21 N -0.489 5.489 22 C 0.108 3.892 23 C -0.163 4.163 24 C 0.482 3.518 25 S -0.669 6.669 26 H 0.017 0.983 27 H 0.116 0.884 28 H 0.014 0.986 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.027 0.973 39 H -0.019 1.019 40 H 0.004 0.996 41 H 0.260 0.740 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.303 0.697 45 H 0.153 0.847 46 H 0.087 0.913 47 H 0.035 0.965 48 H 0.076 0.924 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.848 -18.162 -14.339 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.144 4.144 5 C -0.205 4.205 6 C -0.053 4.053 7 N -0.257 5.257 8 C 0.093 3.907 9 C -0.538 4.538 10 H 0.098 0.902 11 C -0.190 4.190 12 N -0.574 5.574 13 Si 0.773 3.227 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.197 1.197 17 C 0.098 3.902 18 N -0.155 5.155 19 N -0.124 5.124 20 C -0.028 4.028 21 N -0.188 5.188 22 C -0.011 4.011 23 C -0.221 4.221 24 C 0.117 3.883 25 S -0.543 6.543 26 H 0.036 0.964 27 H 0.134 0.866 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.045 0.955 39 H -0.001 1.001 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.317 0.683 45 H 0.171 0.829 46 H 0.106 0.894 47 H 0.055 0.945 48 H 0.095 0.905 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.312 -17.466 -13.664 24.456 hybrid contribution -0.043 0.765 0.606 0.977 sum 10.268 -16.701 -13.058 23.556 Atomic orbital electron populations 1.22275 0.95926 0.98401 1.05114 1.21235 0.95783 0.95588 0.99617 1.21499 0.95485 0.96160 0.98524 1.21457 0.94214 0.96887 1.01844 1.21755 1.00841 0.96848 1.01048 1.22168 0.86140 0.98791 0.98195 1.62062 1.13458 1.38257 1.11957 1.19378 0.93683 0.83170 0.94447 1.21602 1.42853 0.98233 0.91107 0.90246 1.25664 0.95561 0.95175 1.02590 1.70060 1.47441 1.03358 1.36554 0.85710 0.77900 0.77937 0.81146 1.19728 1.21255 1.19660 1.22138 1.02171 0.76021 0.89912 1.49431 1.09959 1.10852 1.45288 1.77193 1.06117 1.12665 1.16418 1.27777 0.87759 0.91832 0.95479 1.46694 1.13816 1.12336 1.45976 1.22375 1.00934 0.76681 1.01154 1.22099 0.99861 1.04158 0.96018 1.23237 0.93782 0.83489 0.87794 1.93610 1.02913 1.93034 1.64713 0.96416 0.86567 0.96693 0.93441 0.93377 0.90709 0.91674 0.91215 0.91278 0.93560 0.94617 0.90560 0.95460 1.00140 0.97796 0.93083 0.90137 0.87930 0.68264 0.82892 0.89448 0.94545 0.90550 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.53 9.06 71.98 0.65 -5.88 16 2 C -0.08 -2.87 5.39 30.59 0.16 -2.70 16 3 C -0.10 -3.50 1.88 -10.79 -0.02 -3.53 16 4 C -0.11 -3.04 5.40 30.59 0.17 -2.87 16 5 C -0.15 -4.39 9.68 71.98 0.70 -3.70 16 6 C 0.07 2.71 4.20 86.31 0.36 3.07 16 7 N -0.53 -21.88 1.35 -913.17 -1.24 -23.12 16 8 C 0.22 11.17 4.73 85.56 0.40 11.57 16 9 C -0.50 -27.44 8.03 25.60 0.21 -27.24 16 10 H 0.08 4.34 3.74 -2.91 -0.01 4.33 16 11 C 0.01 0.44 5.46 84.65 0.46 0.90 16 12 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 13 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 16 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 17 C 0.31 11.13 5.66 170.81 0.97 12.10 16 18 N -0.36 -10.99 3.10 -359.54 -1.12 -12.10 16 19 N -0.30 -6.69 10.99 -59.43 -0.65 -7.34 16 20 C 0.27 3.33 12.65 179.83 2.27 5.60 16 21 N -0.49 -8.96 2.74 -531.13 -1.45 -10.41 16 22 C 0.11 1.22 6.54 86.38 0.56 1.79 16 23 C -0.16 -1.74 10.24 71.98 0.74 -1.00 16 24 C 0.48 14.61 6.84 178.99 1.22 15.84 16 25 S -0.67 -27.24 28.95 -56.49 -1.64 -28.88 16 26 H 0.02 0.80 6.91 -2.39 -0.02 0.78 16 27 H 0.12 4.87 2.53 -2.39 -0.01 4.87 16 28 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 3.32 4.51 -2.39 -0.01 3.31 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.44 6.42 -2.39 -0.02 1.43 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 2.46 5.83 -2.39 -0.01 2.44 16 38 H 0.03 1.07 5.65 -2.39 -0.01 1.06 16 39 H -0.02 -1.03 7.66 -2.39 -0.02 -1.05 16 40 H 0.00 0.22 7.75 -2.39 -0.02 0.20 16 41 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 42 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 43 H 0.10 4.13 7.39 -2.39 -0.02 4.11 16 44 H 0.30 -0.75 8.06 -2.91 -0.02 -0.78 16 45 H 0.15 0.15 8.13 -2.39 -0.02 0.13 16 46 H 0.09 1.50 7.80 -2.39 -0.02 1.48 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 48 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -78.35 387.22 6.01 -72.34 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.93 Total: 13.69 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 8.86 Total: 3.95 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -4.18 Total: -108.54 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: -27.24 SS G_CDS: -1.64 Total: -28.88 kcal Total: -78.35 6.01 -72.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729470336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.479 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds