Wall clock time and date at job start Tue Mar 31 2020 14:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46973 * 110.99773 * 190.32847 * 11 10 9 13 13 C 1.53459 * 109.74140 * 165.13404 * 12 11 10 14 14 N 1.46306 * 108.18056 * 49.60305 * 13 12 11 15 15 C 1.34414 * 129.76228 * 163.59119 * 14 13 12 16 16 C 1.50706 * 126.48193 * 0.22357 * 15 14 13 17 17 C 1.52998 * 109.47020 * 90.00545 * 16 15 14 18 18 C 1.50692 * 109.47049 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.99907 * 269.72146 * 18 17 16 20 20 C 1.38234 * 119.99631 * 179.76855 * 19 18 17 21 21 C 1.38237 * 120.00257 * 0.50560 * 20 19 18 22 22 C 1.38239 * 119.99955 * 359.74983 * 21 20 19 23 23 C 1.38226 * 119.99631 * 359.97438 * 22 21 20 24 24 N 1.30922 * 107.03402 * 180.24848 * 15 14 13 25 25 N 1.28986 * 109.75682 * 359.93725 * 24 15 14 26 26 C 1.29634 * 109.46940 * 359.94717 * 25 24 15 27 27 C 1.47388 * 111.00012 * 66.04845 * 11 10 9 28 28 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 30 30 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 31 31 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 32 32 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 33 33 H 1.08997 * 109.42184 * 285.21616 * 12 11 10 34 34 H 1.08996 * 109.42638 * 45.05000 * 12 11 10 35 35 H 1.09010 * 109.72412 * 289.93223 * 13 12 11 36 36 H 1.08994 * 109.75844 * 169.29884 * 13 12 11 37 37 H 1.09004 * 109.46992 * 210.00106 * 16 15 14 38 38 H 1.09000 * 109.46987 * 330.00082 * 16 15 14 39 39 H 1.09007 * 109.47038 * 300.00122 * 17 16 15 40 40 H 1.08996 * 109.47239 * 59.99593 * 17 16 15 41 41 H 1.07993 * 119.99980 * 359.97438 * 19 18 17 42 42 H 1.07998 * 119.99715 * 180.23538 * 20 19 18 43 43 H 1.08000 * 120.00059 * 179.72821 * 21 20 19 44 44 H 1.07992 * 119.99598 * 179.97438 * 22 21 20 45 45 H 1.07999 * 119.99767 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.74936 * 293.83700 * 27 11 10 47 47 H 1.08998 * 109.75271 * 54.53034 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4166 -6.0653 0.2448 13 6 1.6005 -7.3138 0.6058 14 7 0.5456 -7.4747 -0.3950 15 6 -0.2155 -8.5461 -0.6773 16 6 -0.1603 -9.8891 0.0043 17 6 -1.1242 -9.8979 1.1924 18 6 -1.0686 -11.2406 1.8743 19 6 -1.9223 -12.2530 1.4779 20 6 -1.8679 -13.4862 2.1003 21 6 -0.9671 -13.7036 3.1261 22 6 -0.1171 -12.6895 3.5260 23 6 -0.1675 -11.4583 2.8998 24 7 -1.0134 -8.2024 -1.6568 25 7 -0.7878 -6.9779 -1.9937 26 6 0.1552 -6.4916 -1.2489 27 6 0.7635 -5.1120 -1.2590 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 2.8721 -3.6042 -0.8905 32 1 2.8721 -3.6043 0.8895 33 1 3.0026 -6.2623 -0.6529 34 1 3.0874 -5.8202 1.0682 35 1 1.1550 -7.1894 1.5930 36 1 2.2477 -8.1908 0.6024 37 1 -0.4479 -10.6674 -0.7026 38 1 0.8538 -10.0758 0.3576 39 1 -0.8368 -9.1196 1.8993 40 1 -2.1383 -9.7112 0.8390 41 1 -2.6294 -12.0816 0.6798 42 1 -2.5323 -14.2783 1.7880 43 1 -0.9277 -14.6657 3.6152 44 1 0.5863 -12.8593 4.3276 45 1 0.4963 -10.6658 3.2126 46 1 -0.0247 -4.3624 -1.3281 47 1 1.4410 -5.0135 -2.1071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746476552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:31 Heat of formation + Delta-G solvation = 98.610824 kcal Electronic energy + Delta-G solvation = -26468.222279 eV Core-core repulsion = 22844.675397 eV Total energy + Delta-G solvation = -3623.546883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.20266 -39.61982 -38.13291 -35.44038 -34.55456 -33.02777 -31.67361 -31.20952 -30.49644 -29.80913 -28.25156 -26.04159 -24.68749 -24.38571 -22.91708 -22.79734 -21.50182 -20.82416 -20.47580 -19.52609 -17.25704 -17.02763 -16.59527 -16.35946 -15.71380 -15.62006 -15.26105 -14.88176 -14.62901 -14.43426 -14.27887 -13.99020 -13.77497 -13.59957 -13.46634 -13.01507 -12.84444 -12.55903 -12.39539 -12.26655 -11.84950 -11.70508 -11.64380 -11.35085 -11.22564 -11.20293 -11.15166 -10.96093 -10.63467 -10.25276 -10.08048 -10.00866 -9.54291 -9.24479 -9.23883 -9.14983 -8.85608 -8.39671 -8.13046 -6.05101 -4.09011 1.00191 1.07846 1.89556 2.50207 2.95857 3.29758 3.35157 3.36275 3.45818 3.82115 4.06566 4.35159 4.42037 4.43989 4.47035 4.61470 4.68183 4.70129 4.81513 4.86906 4.88461 4.94995 5.10082 5.19351 5.21634 5.30451 5.32222 5.41089 5.48212 5.60495 5.62232 5.63768 5.74279 5.81245 5.95157 5.99115 6.11646 6.13981 6.18207 6.19535 6.26560 6.31777 6.67994 6.72648 6.89179 7.09542 7.17726 7.63010 7.74866 7.96519 8.32571 8.85731 8.97376 9.55314 11.05933 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002089 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.795324 B =13403.445120 C =13855.493869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.541 5.541 12 C 0.036 3.964 13 C 0.111 3.889 14 N -0.464 5.464 15 C 0.171 3.829 16 C -0.019 4.019 17 C -0.076 4.076 18 C -0.080 4.080 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.116 4.116 24 N -0.298 5.298 25 N -0.291 5.291 26 C 0.193 3.807 27 C 0.140 3.860 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -26.686 5.878 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.060 4.060 11 N -0.266 5.266 12 C -0.093 4.093 13 C -0.013 4.013 14 N -0.156 5.156 15 C -0.097 4.097 16 C -0.059 4.059 17 C -0.115 4.115 18 C -0.080 4.080 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.134 4.134 24 N -0.139 5.139 25 N -0.130 5.130 26 C -0.075 4.075 27 C 0.010 3.990 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.902 -26.642 5.206 27.161 hybrid contribution 2.020 0.985 0.437 2.290 sum 2.923 -25.657 5.643 26.433 Atomic orbital electron populations 1.69949 1.06019 1.26895 1.49971 1.24990 0.94840 0.99236 0.95150 0.86644 0.79563 0.83112 0.78569 1.20255 1.21238 1.20255 1.21076 0.92894 0.90869 1.51708 0.92767 1.19119 0.93918 0.89955 0.98130 1.22444 0.96820 0.87006 0.99749 1.62270 1.27958 1.03154 1.33246 1.22451 0.94382 0.90425 1.02071 1.22175 0.88120 0.99489 0.91499 1.45943 1.29820 1.10666 1.29125 1.24391 0.94095 0.92223 0.98957 1.19915 1.00689 0.88970 0.96343 1.20572 1.00951 0.93973 0.95995 1.19824 0.96265 0.95452 0.96444 1.21137 0.99036 0.92976 0.99993 1.21171 0.98834 0.97172 0.96504 1.21170 0.96391 0.99155 0.97638 1.21150 0.99250 0.93420 0.99909 1.21084 0.98690 0.97400 0.96251 1.74511 1.21061 1.06365 1.11957 1.73989 1.13659 1.02781 1.22590 1.24867 0.97250 0.93921 0.91452 1.20753 0.98538 0.88075 0.91645 0.92787 0.96261 0.95533 0.95351 0.91244 0.93877 0.88052 0.88582 0.88875 0.88299 0.90086 0.90741 0.89823 0.85752 0.86064 0.86235 0.86103 0.86046 0.85964 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 9 C 0.03 0.64 4.90 -27.88 -0.14 0.50 16 10 C 0.07 1.23 4.90 -3.82 -0.02 1.21 16 11 N -0.54 -8.73 4.66 -235.24 -1.10 -9.83 16 12 C 0.04 0.42 5.55 -3.55 -0.02 0.40 16 13 C 0.11 1.11 7.06 -3.91 -0.03 1.08 16 14 N -0.46 -6.37 3.12 -110.79 -0.35 -6.71 16 15 C 0.17 2.31 7.34 -155.63 -1.14 1.17 16 16 C -0.02 -0.18 5.63 -27.88 -0.16 -0.33 16 17 C -0.08 -0.66 5.33 -27.89 -0.15 -0.81 16 18 C -0.08 -0.65 5.13 -104.62 -0.54 -1.19 16 19 C -0.11 -0.90 9.70 -39.58 -0.38 -1.28 16 20 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 21 C -0.13 -0.86 10.05 -39.58 -0.40 -1.26 16 22 C -0.12 -0.83 10.05 -39.59 -0.40 -1.23 16 23 C -0.12 -0.87 9.70 -39.59 -0.38 -1.26 16 24 N -0.30 -5.16 12.24 32.66 0.40 -4.76 16 25 N -0.29 -5.49 12.20 32.76 0.40 -5.09 16 26 C 0.19 3.26 7.86 -155.27 -1.22 2.03 16 27 C 0.14 2.34 5.46 -4.67 -0.03 2.32 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.02 0.50 6.70 -51.93 -0.35 0.15 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 33 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.10 1.00 7.82 -51.93 -0.41 0.60 16 35 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.09 0.64 7.98 -51.93 -0.41 0.22 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 39 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 2.30 6.80 -51.93 -0.35 1.94 16 47 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -33.03 385.89 -12.28 -45.31 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.36 Total: -2.49 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -5.81 Total: -12.85 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.10 Total: -51.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.03 -12.28 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746476552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.918 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds