Wall clock time and date at job start Tue Mar 31 2020 14:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46973 * 110.99773 * 190.32847 * 11 10 9 13 13 C 1.53459 * 109.74140 * 165.13404 * 12 11 10 14 14 N 1.46306 * 108.18056 * 49.60305 * 13 12 11 15 15 C 1.34414 * 129.76228 * 163.59119 * 14 13 12 16 16 C 1.50706 * 126.48193 * 0.22357 * 15 14 13 17 17 C 1.52998 * 109.47020 * 90.00545 * 16 15 14 18 18 C 1.50692 * 109.47049 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.99907 * 269.72146 * 18 17 16 20 20 C 1.38234 * 119.99631 * 179.76855 * 19 18 17 21 21 C 1.38237 * 120.00257 * 0.50560 * 20 19 18 22 22 C 1.38239 * 119.99955 * 359.74983 * 21 20 19 23 23 C 1.38226 * 119.99631 * 359.97438 * 22 21 20 24 24 N 1.30922 * 107.03402 * 180.24848 * 15 14 13 25 25 N 1.28986 * 109.75682 * 359.93725 * 24 15 14 26 26 C 1.29634 * 109.46940 * 359.94717 * 25 24 15 27 27 C 1.47388 * 111.00012 * 66.04845 * 11 10 9 28 28 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 30 30 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 31 31 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 32 32 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 33 33 H 1.08997 * 109.42184 * 285.21616 * 12 11 10 34 34 H 1.08996 * 109.42638 * 45.05000 * 12 11 10 35 35 H 1.09010 * 109.72412 * 289.93223 * 13 12 11 36 36 H 1.08994 * 109.75844 * 169.29884 * 13 12 11 37 37 H 1.09004 * 109.46992 * 210.00106 * 16 15 14 38 38 H 1.09000 * 109.46987 * 330.00082 * 16 15 14 39 39 H 1.09007 * 109.47038 * 300.00122 * 17 16 15 40 40 H 1.08996 * 109.47239 * 59.99593 * 17 16 15 41 41 H 1.07993 * 119.99980 * 359.97438 * 19 18 17 42 42 H 1.07998 * 119.99715 * 180.23538 * 20 19 18 43 43 H 1.08000 * 120.00059 * 179.72821 * 21 20 19 44 44 H 1.07992 * 119.99598 * 179.97438 * 22 21 20 45 45 H 1.07999 * 119.99767 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.74936 * 293.83700 * 27 11 10 47 47 H 1.08998 * 109.75271 * 54.53034 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4166 -6.0653 0.2448 13 6 1.6005 -7.3138 0.6058 14 7 0.5456 -7.4747 -0.3950 15 6 -0.2155 -8.5461 -0.6773 16 6 -0.1603 -9.8891 0.0043 17 6 -1.1242 -9.8979 1.1924 18 6 -1.0686 -11.2406 1.8743 19 6 -1.9223 -12.2530 1.4779 20 6 -1.8679 -13.4862 2.1003 21 6 -0.9671 -13.7036 3.1261 22 6 -0.1171 -12.6895 3.5260 23 6 -0.1675 -11.4583 2.8998 24 7 -1.0134 -8.2024 -1.6568 25 7 -0.7878 -6.9779 -1.9937 26 6 0.1552 -6.4916 -1.2489 27 6 0.7635 -5.1120 -1.2590 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 2.8721 -3.6042 -0.8905 32 1 2.8721 -3.6043 0.8895 33 1 3.0026 -6.2623 -0.6529 34 1 3.0874 -5.8202 1.0682 35 1 1.1550 -7.1894 1.5930 36 1 2.2477 -8.1908 0.6024 37 1 -0.4479 -10.6674 -0.7026 38 1 0.8538 -10.0758 0.3576 39 1 -0.8368 -9.1196 1.8993 40 1 -2.1383 -9.7112 0.8390 41 1 -2.6294 -12.0816 0.6798 42 1 -2.5323 -14.2783 1.7880 43 1 -0.9277 -14.6657 3.6152 44 1 0.5863 -12.8593 4.3276 45 1 0.4963 -10.6658 3.2126 46 1 -0.0247 -4.3624 -1.3281 47 1 1.4410 -5.0135 -2.1071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746476552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:30 Heat of formation + Delta-G solvation = 80.553336 kcal Electronic energy + Delta-G solvation = -26469.005311 eV Core-core repulsion = 22844.675397 eV Total energy + Delta-G solvation = -3624.329914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.37410 -40.15101 -39.37726 -36.43296 -35.72251 -34.78474 -32.80910 -31.78568 -31.71246 -31.00908 -29.36081 -27.48324 -25.90045 -25.48805 -24.16645 -23.40251 -22.33936 -22.09324 -21.63759 -20.68051 -18.64141 -17.98302 -17.84074 -17.46959 -16.68558 -16.52101 -16.35151 -16.11797 -15.97916 -15.66047 -15.20167 -15.01092 -14.61628 -14.37834 -14.23278 -14.12523 -14.08545 -13.78345 -13.57520 -13.31649 -13.10965 -12.87522 -12.82760 -12.72039 -12.42483 -12.40043 -12.27304 -11.87485 -11.86481 -11.73668 -11.47676 -11.29466 -11.27045 -11.08341 -10.53191 -10.22197 -9.76252 -9.57027 -9.41508 -8.17899 -6.29316 0.44714 0.56014 0.78233 1.42402 1.44992 1.47612 1.52829 1.72293 2.39889 2.61774 2.91413 3.15132 3.16241 3.32424 3.47098 3.76449 3.90384 4.00910 4.07308 4.10381 4.18439 4.20812 4.26584 4.32562 4.36447 4.44771 4.52304 4.54374 4.56375 4.65505 4.70222 4.74152 4.78430 4.84490 5.01576 5.03539 5.05996 5.09037 5.21699 5.24374 5.45162 5.57186 5.63281 5.69259 5.72979 5.76058 5.88765 5.92304 6.07047 6.17764 6.26542 6.88831 7.40234 7.64458 8.93787 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002089 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.795324 B =13403.445120 C =13855.493869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.031 3.969 10 C 0.085 3.915 11 N -0.552 5.552 12 C 0.033 3.967 13 C 0.106 3.894 14 N -0.460 5.460 15 C 0.192 3.808 16 C -0.014 4.014 17 C -0.067 4.067 18 C -0.089 4.089 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.126 4.126 23 C -0.122 4.122 24 N -0.342 5.342 25 N -0.332 5.332 26 C 0.180 3.820 27 C 0.147 3.853 28 H 0.262 0.738 29 H -0.009 1.009 30 H -0.008 1.008 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 -28.541 7.639 30.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.007 4.007 10 C -0.042 4.042 11 N -0.277 5.277 12 C -0.094 4.094 13 C -0.015 4.015 14 N -0.151 5.151 15 C -0.077 4.077 16 C -0.053 4.053 17 C -0.106 4.106 18 C -0.089 4.089 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.140 4.140 24 N -0.182 5.182 25 N -0.171 5.171 26 C -0.090 4.090 27 C 0.017 3.983 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.105 0.895 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.812 -28.522 6.979 29.610 hybrid contribution 1.088 1.445 -0.056 1.810 sum 4.900 -27.076 6.923 28.374 Atomic orbital electron populations 1.70110 1.07916 1.27751 1.51494 1.25973 0.95668 1.03417 0.94843 0.85506 0.78188 0.78124 0.79240 1.19186 1.21408 1.18893 1.21587 0.93702 0.91965 1.50652 0.91526 1.18961 0.94381 0.92201 0.95137 1.22046 0.95112 0.86318 1.00716 1.62099 1.29094 1.03813 1.32715 1.22643 0.94176 0.89134 1.03475 1.22574 0.87667 1.00501 0.90767 1.46153 1.30265 1.09688 1.28965 1.25133 0.92059 0.93245 0.97231 1.20134 1.02664 0.86292 0.96224 1.20431 0.99775 0.94636 0.95733 1.19776 0.97050 0.94951 0.97117 1.21293 0.99385 0.93542 1.00459 1.21412 0.99279 0.97297 0.96641 1.21483 0.95995 1.00089 0.97404 1.21452 0.99502 0.93218 1.00244 1.21309 0.98680 0.98143 0.95881 1.74420 1.23253 1.06093 1.14404 1.73880 1.14994 1.03947 1.24273 1.24677 0.97512 0.94337 0.92466 1.20484 0.97829 0.87562 0.92409 0.92920 0.99053 0.98913 0.94798 0.89600 0.93077 0.85355 0.87374 0.84248 0.87900 0.86904 0.90537 0.91659 0.85743 0.84713 0.84439 0.84239 0.84464 0.89470 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.55 4.90 29.85 0.15 1.70 16 10 C 0.08 3.11 4.90 86.31 0.42 3.53 16 11 N -0.55 -17.45 4.66 -898.18 -4.18 -21.63 16 12 C 0.03 0.68 5.55 86.44 0.48 1.16 16 13 C 0.11 1.73 7.06 86.57 0.61 2.34 16 14 N -0.46 -11.88 3.12 -504.44 -1.57 -13.46 16 15 C 0.19 4.97 7.34 138.21 1.01 5.98 16 16 C -0.01 -0.22 5.63 29.85 0.17 -0.05 16 17 C -0.07 -1.06 5.33 29.84 0.16 -0.90 16 18 C -0.09 -1.28 5.13 -19.87 -0.10 -1.38 16 19 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 20 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 21 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 22 C -0.13 -1.42 10.05 22.27 0.22 -1.19 16 23 C -0.12 -1.49 9.70 22.27 0.22 -1.28 16 24 N -0.34 -12.05 12.24 -50.58 -0.62 -12.67 16 25 N -0.33 -13.05 12.20 -50.26 -0.61 -13.67 16 26 C 0.18 6.17 7.86 138.12 1.09 7.25 16 27 C 0.15 5.14 5.46 85.49 0.47 5.60 16 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 29 H -0.01 -0.49 6.70 -2.39 -0.02 -0.51 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 32 H 0.09 2.88 7.86 -2.39 -0.02 2.86 16 33 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.13 1.96 7.82 -2.39 -0.02 1.94 16 35 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.14 1.08 7.98 -2.39 -0.02 1.06 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.11 7.92 -2.39 -0.02 1.09 16 39 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 40 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 44 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 45 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 46 H 0.09 3.60 6.80 -2.39 -0.02 3.58 16 47 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 Total: -1.00 -75.70 385.89 2.52 -73.18 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.95 Total: 9.73 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 6.25 Total: -10.42 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.70 Total: -117.88 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -75.70 2.52 -73.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746476552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.734 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds