Wall clock time and date at job start Tue Mar 31 2020 14:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38627 * 120.44394 * 2 1 4 4 C 1.38584 * 118.39716 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.44511 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.46800 * 95.00619 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47107 * 179.97438 * 7 6 5 9 9 C 1.38286 * 119.92142 * 269.72559 * 8 7 6 10 10 C 1.38108 * 120.06868 * 179.72432 * 9 8 7 11 11 C 1.38904 * 119.92733 * 0.54850 * 10 9 8 12 12 N 1.39673 * 120.07815 * 179.74663 * 11 10 9 13 13 C 1.46499 * 120.00476 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99962 * 359.97438 * 12 11 10 15 15 C 1.50705 * 109.46862 * 89.99968 * 14 12 11 16 16 H 1.07997 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99906 * 180.02562 * 15 14 12 18 18 N 1.31514 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47182 * 59.99674 * 19 17 15 21 21 H 1.48498 * 109.47383 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47143 * 300.00040 * 19 17 15 23 23 C 1.38913 * 119.85166 * 359.72744 * 11 10 9 24 24 C 1.38106 * 119.92415 * 359.97438 * 23 11 10 25 25 N 1.32352 * 119.10509 * 0.27840 * 4 3 2 26 26 C 1.31788 * 120.81686 * 359.43742 * 25 4 3 27 27 N 1.31808 * 121.75516 * 0.57619 * 26 25 4 28 28 H 1.08998 * 109.47428 * 90.00094 * 1 2 3 29 29 H 1.09007 * 109.47072 * 210.00237 * 1 2 3 30 30 H 1.08999 * 109.47418 * 329.99393 * 1 2 3 31 31 H 1.07992 * 120.80011 * 0.04748 * 3 2 1 32 32 H 1.08995 * 109.47455 * 335.00557 * 5 4 3 33 33 H 1.09003 * 109.47449 * 214.99790 * 5 4 3 34 34 H 1.00908 * 110.99583 * 303.94914 * 6 5 4 35 35 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 36 36 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 37 37 H 1.07999 * 119.96544 * 359.97438 * 9 8 7 38 38 H 1.08005 * 120.03586 * 180.27157 * 10 9 8 39 39 H 1.08997 * 109.47317 * 89.99875 * 13 12 11 40 40 H 1.09003 * 109.47130 * 210.00086 * 13 12 11 41 41 H 1.09003 * 109.46996 * 329.99675 * 13 12 11 42 42 H 1.08996 * 109.47807 * 210.00011 * 14 12 11 43 43 H 1.09005 * 109.47199 * 330.00143 * 14 12 11 44 44 H 0.96996 * 119.99884 * 180.02562 * 18 17 15 45 45 H 1.07997 * 120.03863 * 179.97438 * 23 11 10 46 46 H 1.07999 * 119.96140 * 179.97438 * 24 23 11 47 47 H 1.07997 * 119.11732 * 180.26468 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2093 1.1951 0.0000 4 6 3.5943 1.1456 -0.0005 5 6 4.4038 2.4167 -0.0012 6 7 4.7693 2.7651 1.3784 7 6 5.5605 4.0022 1.4170 8 6 5.9154 4.3271 2.8451 9 6 5.0734 5.1215 3.6015 10 6 5.3928 5.4165 4.9124 11 6 6.5670 4.9237 5.4673 12 7 6.8958 5.2245 6.7910 13 6 8.1343 4.7035 7.3748 14 6 6.0020 6.0611 7.5958 15 6 5.0018 5.1872 8.3078 16 1 5.0293 4.1159 8.1745 17 6 4.0514 5.7555 9.1293 18 7 4.0182 7.0601 9.2920 19 14 2.8111 4.6724 10.0113 20 1 3.5274 3.7195 10.8969 21 1 1.9052 5.5203 10.8271 22 1 2.0150 3.9161 9.0114 23 6 7.4134 4.1307 4.7028 24 6 7.0849 3.8345 3.3945 25 7 4.1963 -0.0330 -0.0067 26 6 3.4956 -1.1491 -0.0011 27 7 2.1775 -1.1407 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6898 2.1419 0.0008 32 1 3.8132 3.2234 -0.4353 33 1 5.3088 2.2709 -0.5909 34 1 3.9491 2.8424 1.9612 35 1 6.4735 3.8678 0.8369 36 1 4.9776 4.8197 0.9928 37 1 4.1630 5.5083 3.1680 38 1 4.7326 6.0334 5.5040 39 1 8.9433 5.4137 7.2042 40 1 7.9980 4.5586 8.4465 41 1 8.3831 3.7504 6.9081 42 1 6.5865 6.6163 8.3294 43 1 5.4759 6.7605 6.9460 44 1 3.3499 7.4598 9.8703 45 1 8.3273 3.7463 5.1310 46 1 7.7428 3.2183 2.7995 47 1 4.0152 -2.0959 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756989563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:27 Heat of formation + Delta-G solvation = 78.660801 kcal Electronic energy + Delta-G solvation = -25959.743353 eV Core-core repulsion = 22335.331373 eV Total energy + Delta-G solvation = -3624.411981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29225 -39.06447 -36.91235 -35.49823 -34.40130 -33.00961 -32.58656 -30.45266 -30.15451 -28.85366 -27.81639 -26.84249 -25.16730 -24.29088 -23.65138 -22.15881 -21.64901 -21.47083 -19.60379 -17.92456 -16.95566 -16.56953 -16.38927 -15.78015 -15.64810 -15.52602 -15.05810 -14.76140 -14.61971 -14.19368 -13.94115 -13.70366 -13.47250 -13.28331 -13.15794 -12.97898 -12.86655 -12.79144 -12.28409 -12.17472 -11.86298 -11.76252 -11.41179 -11.25401 -11.09436 -10.98731 -10.83071 -10.68288 -10.56543 -10.28956 -9.91144 -9.82214 -9.75679 -9.44539 -8.87902 -8.52325 -8.50348 -8.27347 -6.48387 -6.03505 -4.19293 0.65509 0.78762 2.10164 2.20509 3.26698 3.30944 3.34618 3.45639 3.77938 3.78161 4.03587 4.13692 4.31983 4.39870 4.66230 4.69261 4.72918 4.95773 5.04100 5.14213 5.19596 5.20266 5.23350 5.32167 5.44468 5.50648 5.57563 5.57768 5.62557 5.73068 5.82140 6.00372 6.07374 6.15813 6.27832 6.37932 6.42207 6.63799 6.77791 6.83823 6.95724 7.03123 7.18108 7.20106 7.27922 7.35671 7.59033 7.79255 7.89223 8.13745 8.25267 8.47323 8.89708 9.47570 10.93799 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.002585 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.315131 B =10827.517498 C =12439.655886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.175 3.825 3 C -0.224 4.224 4 C 0.187 3.813 5 C 0.105 3.895 6 N -0.675 5.675 7 C 0.118 3.882 8 C -0.176 4.176 9 C -0.067 4.067 10 C -0.188 4.188 11 C 0.243 3.757 12 N -0.615 5.615 13 C 0.098 3.902 14 C 0.249 3.751 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.223 4.223 24 C -0.049 4.049 25 N -0.505 5.505 26 C 0.299 3.701 27 N -0.526 5.526 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.344 0.656 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.265 0.735 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 -8.872 -19.911 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.247 4.247 4 C 0.040 3.960 5 C -0.025 4.025 6 N -0.307 5.307 7 C -0.009 4.009 8 C -0.179 4.179 9 C -0.086 4.086 10 C -0.211 4.211 11 C 0.135 3.865 12 N -0.321 5.321 13 C -0.046 4.046 14 C 0.129 3.871 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.246 4.246 24 C -0.068 4.068 25 N -0.220 5.220 26 C 0.011 3.989 27 N -0.242 5.242 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.445 -9.913 -19.568 21.940 hybrid contribution -1.842 0.774 0.581 2.080 sum -2.286 -9.139 -18.987 21.196 Atomic orbital electron populations 1.20796 0.87840 1.04275 1.03587 1.21733 0.97639 0.88211 0.89568 1.22654 0.95807 1.00654 1.05559 1.21614 0.90934 0.94151 0.89293 1.20859 0.98745 0.90417 0.92466 1.60522 1.26180 1.36484 1.07527 1.20665 0.97151 0.88648 0.94474 1.19119 0.97900 1.05341 0.95571 1.20648 0.97675 0.96758 0.93524 1.20838 0.98206 1.06320 0.95710 1.17972 0.92509 0.91369 0.84619 1.47113 1.22507 1.53551 1.08883 1.21481 0.86385 0.97605 0.99159 1.19282 0.88236 0.89659 0.89887 1.21549 1.14321 0.94008 1.27206 0.92308 1.24958 0.97536 0.95034 0.96505 1.69919 1.35569 1.09566 1.38394 0.86582 0.81057 0.80310 0.79664 1.20205 1.21166 1.20119 1.20584 1.02069 1.06587 0.95348 1.20507 0.95566 0.96665 0.94057 1.68266 1.41788 0.98582 1.13340 1.25004 0.86621 0.96989 0.90311 1.68260 1.10571 1.30435 1.14932 0.89738 0.89846 0.90000 0.83745 0.93211 0.88749 0.83807 0.90744 0.94981 0.87465 0.85111 0.94574 0.91448 0.92628 0.95190 0.94644 0.92581 0.86861 0.87199 0.78740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.22 36.00 0.37 -0.31 16 2 C 0.17 1.68 6.82 -82.24 -0.56 1.12 16 3 C -0.22 -2.06 9.52 -39.31 -0.37 -2.44 16 4 C 0.19 2.01 6.34 -82.24 -0.52 1.48 16 5 C 0.10 1.00 6.04 -4.98 -0.03 0.97 16 6 N -0.68 -7.94 6.48 -116.34 -0.75 -8.69 16 7 C 0.12 1.39 5.81 -4.98 -0.03 1.36 16 8 C -0.18 -2.66 5.39 -104.59 -0.56 -3.22 16 9 C -0.07 -1.10 9.69 -39.61 -0.38 -1.49 16 10 C -0.19 -3.76 9.21 -39.38 -0.36 -4.12 16 11 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 12 N -0.62 -13.20 2.99 -181.00 -0.54 -13.74 16 13 C 0.10 1.73 10.19 59.85 0.61 2.34 16 14 C 0.25 6.23 4.91 -5.19 -0.03 6.21 16 15 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.56 13.29 55.43 0.74 -24.83 16 19 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.22 -3.91 9.21 -39.38 -0.36 -4.28 16 24 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 25 N -0.51 -6.08 10.38 -10.80 -0.11 -6.19 16 26 C 0.30 3.21 12.29 -92.15 -1.13 2.08 16 27 N -0.53 -5.84 10.38 -10.80 -0.11 -5.95 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.05 0.38 8.06 -51.93 -0.42 -0.04 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.34 4.16 8.71 -39.29 -0.34 3.82 16 35 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.13 2.88 6.14 -52.48 -0.32 2.56 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 41 H 0.06 0.88 6.20 -51.93 -0.32 0.55 16 42 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 46 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -31.27 393.88 -11.67 -42.93 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.08 Total: 4.57 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -4.72 Total: -10.31 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.78 Total: -59.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.27 -11.67 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756989563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.593 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds