Wall clock time and date at job start Tue Mar 31 2020 14:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38627 * 120.44394 * 2 1 4 4 C 1.38584 * 118.39716 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.44511 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.46800 * 95.00619 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47107 * 179.97438 * 7 6 5 9 9 C 1.38286 * 119.92142 * 269.72559 * 8 7 6 10 10 C 1.38108 * 120.06868 * 179.72432 * 9 8 7 11 11 C 1.38904 * 119.92733 * 0.54850 * 10 9 8 12 12 N 1.39673 * 120.07815 * 179.74663 * 11 10 9 13 13 C 1.46499 * 120.00476 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99962 * 359.97438 * 12 11 10 15 15 C 1.50705 * 109.46862 * 89.99968 * 14 12 11 16 16 H 1.07997 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99906 * 180.02562 * 15 14 12 18 18 N 1.31514 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47182 * 59.99674 * 19 17 15 21 21 H 1.48498 * 109.47383 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47143 * 300.00040 * 19 17 15 23 23 C 1.38913 * 119.85166 * 359.72744 * 11 10 9 24 24 C 1.38106 * 119.92415 * 359.97438 * 23 11 10 25 25 N 1.32352 * 119.10509 * 0.27840 * 4 3 2 26 26 C 1.31788 * 120.81686 * 359.43742 * 25 4 3 27 27 N 1.31808 * 121.75516 * 0.57619 * 26 25 4 28 28 H 1.08998 * 109.47428 * 90.00094 * 1 2 3 29 29 H 1.09007 * 109.47072 * 210.00237 * 1 2 3 30 30 H 1.08999 * 109.47418 * 329.99393 * 1 2 3 31 31 H 1.07992 * 120.80011 * 0.04748 * 3 2 1 32 32 H 1.08995 * 109.47455 * 335.00557 * 5 4 3 33 33 H 1.09003 * 109.47449 * 214.99790 * 5 4 3 34 34 H 1.00908 * 110.99583 * 303.94914 * 6 5 4 35 35 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 36 36 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 37 37 H 1.07999 * 119.96544 * 359.97438 * 9 8 7 38 38 H 1.08005 * 120.03586 * 180.27157 * 10 9 8 39 39 H 1.08997 * 109.47317 * 89.99875 * 13 12 11 40 40 H 1.09003 * 109.47130 * 210.00086 * 13 12 11 41 41 H 1.09003 * 109.46996 * 329.99675 * 13 12 11 42 42 H 1.08996 * 109.47807 * 210.00011 * 14 12 11 43 43 H 1.09005 * 109.47199 * 330.00143 * 14 12 11 44 44 H 0.96996 * 119.99884 * 180.02562 * 18 17 15 45 45 H 1.07997 * 120.03863 * 179.97438 * 23 11 10 46 46 H 1.07999 * 119.96140 * 179.97438 * 24 23 11 47 47 H 1.07997 * 119.11732 * 180.26468 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2093 1.1951 0.0000 4 6 3.5943 1.1456 -0.0005 5 6 4.4038 2.4167 -0.0012 6 7 4.7693 2.7651 1.3784 7 6 5.5605 4.0022 1.4170 8 6 5.9154 4.3271 2.8451 9 6 5.0734 5.1215 3.6015 10 6 5.3928 5.4165 4.9124 11 6 6.5670 4.9237 5.4673 12 7 6.8958 5.2245 6.7910 13 6 8.1343 4.7035 7.3748 14 6 6.0020 6.0611 7.5958 15 6 5.0018 5.1872 8.3078 16 1 5.0293 4.1159 8.1745 17 6 4.0514 5.7555 9.1293 18 7 4.0182 7.0601 9.2920 19 14 2.8111 4.6724 10.0113 20 1 3.5274 3.7195 10.8969 21 1 1.9052 5.5203 10.8271 22 1 2.0150 3.9161 9.0114 23 6 7.4134 4.1307 4.7028 24 6 7.0849 3.8345 3.3945 25 7 4.1963 -0.0330 -0.0067 26 6 3.4956 -1.1491 -0.0011 27 7 2.1775 -1.1407 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6898 2.1419 0.0008 32 1 3.8132 3.2234 -0.4353 33 1 5.3088 2.2709 -0.5909 34 1 3.9491 2.8424 1.9612 35 1 6.4735 3.8678 0.8369 36 1 4.9776 4.8197 0.9928 37 1 4.1630 5.5083 3.1680 38 1 4.7326 6.0334 5.5040 39 1 8.9433 5.4137 7.2042 40 1 7.9980 4.5586 8.4465 41 1 8.3831 3.7504 6.9081 42 1 6.5865 6.6163 8.3294 43 1 5.4759 6.7605 6.9460 44 1 3.3499 7.4598 9.8703 45 1 8.3273 3.7463 5.1310 46 1 7.7428 3.2183 2.7995 47 1 4.0152 -2.0959 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756989563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:26 Heat of formation + Delta-G solvation = 60.767933 kcal Electronic energy + Delta-G solvation = -25960.519246 eV Core-core repulsion = 22335.331373 eV Total energy + Delta-G solvation = -3625.187874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01681 -40.44676 -38.04007 -36.73284 -35.22615 -34.73568 -33.66136 -31.87653 -31.33367 -29.70204 -29.48923 -27.85361 -26.54197 -25.33804 -24.81539 -23.54334 -22.94336 -22.35511 -21.02088 -18.69292 -18.63943 -18.16281 -17.46281 -16.95447 -16.45544 -16.35718 -16.31227 -16.21190 -15.68928 -15.38474 -15.29383 -15.08642 -14.48814 -14.28674 -14.23608 -14.10004 -14.01238 -13.81487 -13.38929 -13.23129 -13.16195 -13.05503 -12.89242 -12.79450 -12.65443 -12.53363 -12.20355 -11.98171 -11.80508 -11.77281 -11.41384 -11.35728 -10.64923 -10.52379 -10.39735 -10.20501 -9.65760 -9.34371 -8.36770 -7.80552 -6.38216 -0.07113 0.05357 0.72214 0.85346 1.36590 1.37879 1.46531 2.33534 2.63215 2.68909 3.02937 3.05367 3.13152 3.15186 3.39899 3.66773 4.01308 4.07244 4.08405 4.12903 4.25691 4.34355 4.41141 4.47577 4.53313 4.64342 4.65141 4.70809 4.71480 4.73739 4.78616 4.87004 4.87483 4.93340 5.01608 5.08370 5.13914 5.20172 5.34396 5.48912 5.58928 5.67516 5.70230 5.92018 6.01577 6.06679 6.10468 6.23557 6.37165 6.49899 6.82072 6.93604 7.14854 7.33656 8.82410 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.002585 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.315131 B =10827.517498 C =12439.655886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.222 4.222 4 C 0.170 3.830 5 C 0.110 3.890 6 N -0.689 5.689 7 C 0.124 3.876 8 C -0.161 4.161 9 C -0.065 4.065 10 C -0.217 4.217 11 C 0.212 3.788 12 N -0.632 5.632 13 C 0.098 3.902 14 C 0.267 3.733 15 C -0.543 4.543 16 H 0.047 0.953 17 C 0.014 3.986 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.273 1.273 23 C -0.220 4.220 24 C -0.050 4.050 25 N -0.531 5.531 26 C 0.286 3.714 27 N -0.546 5.546 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.340 0.660 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.009 0.991 43 H 0.012 0.988 44 H 0.268 0.732 45 H 0.130 0.870 46 H 0.138 0.862 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 -10.044 -21.902 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.016 3.984 3 C -0.245 4.245 4 C 0.024 3.976 5 C -0.018 4.018 6 N -0.321 5.321 7 C -0.004 4.004 8 C -0.164 4.164 9 C -0.084 4.084 10 C -0.239 4.239 11 C 0.107 3.893 12 N -0.340 5.340 13 C -0.045 4.045 14 C 0.146 3.854 15 C -0.581 4.581 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.199 1.199 23 C -0.243 4.243 24 C -0.069 4.069 25 N -0.246 5.246 26 C -0.002 4.002 27 N -0.262 5.262 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.189 0.811 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.147 0.853 46 H 0.155 0.845 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.940 -11.100 -21.596 24.300 hybrid contribution -1.689 1.105 1.041 2.271 sum -2.630 -9.994 -20.555 23.007 Atomic orbital electron populations 1.20887 0.85707 1.04889 1.04729 1.22323 0.99170 0.88104 0.88824 1.22935 0.95359 1.01666 1.04495 1.21909 0.91857 0.94199 0.89605 1.20871 0.99124 0.90642 0.91210 1.60440 1.26353 1.36322 1.08949 1.20645 0.98243 0.89465 0.92018 1.19514 0.96762 1.03027 0.97049 1.20865 0.98702 0.96615 0.92238 1.20772 0.98440 1.07510 0.97223 1.18253 0.93557 0.93070 0.84452 1.46972 1.23255 1.54341 1.09461 1.21594 0.85436 0.98964 0.98518 1.18767 0.88052 0.89472 0.89157 1.21743 1.15199 0.93605 1.27596 0.93448 1.25759 0.99294 0.96291 0.97182 1.70024 1.36398 1.11072 1.39066 0.85580 0.78723 0.78670 0.78542 1.19506 1.20221 1.19862 1.20804 1.02032 1.05587 0.95879 1.20892 0.96123 0.96337 0.93517 1.68275 1.42593 0.99354 1.14398 1.25428 0.86885 0.97619 0.90223 1.68318 1.10797 1.31396 1.15654 0.88201 0.90271 0.88319 0.81120 0.90602 0.88771 0.84177 0.89348 0.93107 0.85374 0.88613 0.92862 0.92572 0.90513 0.97317 0.96976 0.92331 0.85271 0.84470 0.76914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.22 71.23 0.73 -0.37 16 2 C 0.16 2.83 6.82 42.58 0.29 3.12 16 3 C -0.22 -3.57 9.52 22.45 0.21 -3.35 16 4 C 0.17 3.31 6.34 42.56 0.27 3.58 16 5 C 0.11 1.78 6.04 85.55 0.52 2.30 16 6 N -0.69 -14.10 6.48 -521.98 -3.38 -17.49 16 7 C 0.12 2.46 5.81 85.56 0.50 2.96 16 8 C -0.16 -4.44 5.39 -19.84 -0.11 -4.55 16 9 C -0.07 -2.10 9.69 22.25 0.22 -1.88 16 10 C -0.22 -8.94 9.21 22.40 0.21 -8.73 16 11 C 0.21 8.70 6.55 38.21 0.25 8.95 16 12 N -0.63 -28.06 2.99 -726.54 -2.17 -30.23 16 13 C 0.10 3.48 10.19 127.77 1.30 4.78 16 14 C 0.27 14.13 4.91 85.63 0.42 14.55 16 15 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 16 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 17 C 0.01 0.79 5.46 84.65 0.46 1.26 16 18 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16 19 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 23 C -0.22 -7.44 9.21 22.40 0.21 -7.23 16 24 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 25 N -0.53 -12.14 10.38 -188.08 -1.95 -14.09 16 26 C 0.29 5.94 12.29 180.88 2.22 8.16 16 27 N -0.55 -11.57 10.38 -188.07 -1.95 -13.52 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.08 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.34 7.34 8.71 -89.69 -0.78 6.56 16 35 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 36 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.10 4.56 6.14 -2.91 -0.02 4.54 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 41 H 0.08 2.35 6.20 -2.39 -0.01 2.33 16 42 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 43 H 0.01 0.70 6.20 -2.38 -0.01 0.68 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 46 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.21 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -69.83 393.88 1.20 -68.63 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.19 Total: 22.72 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 8.15 Total: -8.16 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -9.17 Total: -129.38 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -69.83 1.20 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756989563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.400 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds