Wall clock time and date at job start Tue Mar 31 2020 14:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00309 * 2 1 4 4 H 1.48500 * 109.46893 * 239.99775 * 3 2 1 5 5 H 1.48495 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47062 * 120.00017 * 3 2 1 7 7 C 1.38819 * 119.99315 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99460 * 201.45249 * 7 2 1 9 9 N 1.36936 * 120.00451 * 21.45053 * 7 2 1 10 10 C 1.46503 * 119.99697 * 36.99085 * 9 7 2 11 11 C 1.50703 * 109.47002 * 90.00030 * 10 9 7 12 12 C 1.35349 * 126.74789 * 94.70724 * 11 10 9 13 13 N 1.35316 * 106.17503 * 179.85424 * 12 11 10 14 14 C 1.46498 * 125.87230 * 180.12261 * 13 12 11 15 15 C 1.50694 * 109.47245 * 125.32392 * 14 13 12 16 16 C 1.38235 * 120.00077 * 269.72640 * 15 14 13 17 17 C 1.38236 * 120.00135 * 179.76775 * 16 15 14 18 18 C 1.38235 * 119.99887 * 0.50797 * 17 16 15 19 19 C 1.38233 * 119.99959 * 359.74077 * 18 17 16 20 20 C 1.38235 * 120.00082 * 90.00212 * 15 14 13 21 21 N 1.28722 * 108.26175 * 0.41593 * 13 12 11 22 22 N 1.28633 * 110.17681 * 359.73870 * 21 13 12 23 23 C 1.46500 * 119.99980 * 217.26627 * 9 7 2 24 24 C 1.54266 * 110.03154 * 61.25542 * 23 9 7 25 25 C 1.54962 * 104.15908 * 217.13745 * 24 23 9 26 26 C 1.54883 * 102.78046 * 37.88712 * 25 24 23 27 27 C 1.53866 * 110.03099 * 304.03740 * 23 9 7 28 28 H 0.97002 * 119.99892 * 354.92956 * 1 2 3 29 29 H 1.08996 * 109.46753 * 210.00222 * 10 9 7 30 30 H 1.08998 * 109.47235 * 330.00437 * 10 9 7 31 31 H 1.08003 * 126.91563 * 0.02562 * 12 11 10 32 32 H 1.08997 * 109.46667 * 245.32524 * 14 13 12 33 33 H 1.08997 * 109.47012 * 5.32406 * 14 13 12 34 34 H 1.08006 * 120.00006 * 0.02562 * 16 15 14 35 35 H 1.08001 * 120.00408 * 180.23275 * 17 16 15 36 36 H 1.08002 * 120.00334 * 179.72890 * 18 17 16 37 37 H 1.08003 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00354 * 359.97438 * 20 15 14 39 39 H 1.08998 * 110.01213 * 182.64252 * 23 9 7 40 40 H 1.09003 * 110.48792 * 335.78424 * 24 23 9 41 41 H 1.08994 * 110.48985 * 98.42577 * 24 23 9 42 42 H 1.09002 * 110.71788 * 279.57332 * 25 24 23 43 43 H 1.09004 * 110.92431 * 156.29635 * 25 24 23 44 44 H 1.09001 * 110.48778 * 203.40811 * 26 25 24 45 45 H 1.09007 * 110.60168 * 80.81654 * 26 25 24 46 46 H 1.09000 * 110.03192 * 238.56475 * 27 23 9 47 47 H 1.08999 * 110.03999 * 359.97438 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0340 -1.2346 0.3426 9 7 1.3965 -2.3473 -0.4326 10 6 0.4629 -2.2963 -1.5605 11 6 1.2169 -2.5140 -2.8470 12 6 1.3846 -3.6885 -3.4985 13 7 2.1199 -3.4073 -4.5992 14 6 2.5502 -4.3726 -5.6137 15 6 2.1016 -3.9051 -6.9742 16 6 0.8700 -4.2938 -7.4672 17 6 0.4564 -3.8611 -8.7133 18 6 1.2788 -3.0482 -9.4707 19 6 2.5126 -2.6636 -8.9798 20 6 2.9240 -3.0922 -7.7316 21 7 2.3814 -2.1470 -4.5984 22 7 1.8571 -1.5856 -3.5666 23 6 1.6691 -3.6222 0.2357 24 6 1.2393 -3.5457 1.7153 25 6 2.3204 -4.3630 2.4667 26 6 3.6186 -3.9940 1.7070 27 6 3.1811 -3.9074 0.2301 28 1 -0.4850 0.8368 0.0742 29 1 -0.2901 -3.0757 -1.4442 30 1 -0.0240 -1.3214 -1.5853 31 1 1.0053 -4.6551 -3.2014 32 1 3.6369 -4.4558 -5.5981 33 1 2.1082 -5.3457 -5.3999 34 1 0.2292 -4.9323 -6.8772 35 1 -0.5073 -4.1617 -9.0969 36 1 0.9576 -2.7136 -10.4460 37 1 3.1553 -2.0288 -9.5717 38 1 3.8879 -2.7917 -7.3482 39 1 1.1351 -4.4285 -0.2670 40 1 1.2362 -2.5112 2.0587 41 1 0.2563 -3.9965 1.8508 42 1 2.1185 -5.4315 2.3902 43 1 2.3837 -4.0572 3.5111 44 1 4.3710 -4.7720 1.8370 45 1 4.0025 -3.0325 2.0481 46 1 3.3809 -4.8528 -0.2744 47 1 3.7122 -3.0976 -0.2701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775603249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:11 Heat of formation + Delta-G solvation = 141.958973 kcal Electronic energy + Delta-G solvation = -27599.384877 eV Core-core repulsion = 23977.717711 eV Total energy + Delta-G solvation = -3621.667166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47387 -39.39470 -37.68084 -34.98502 -34.11225 -31.44574 -31.19271 -31.09912 -30.15096 -27.82218 -27.07573 -26.60777 -25.65249 -22.86600 -22.55171 -22.25626 -21.00884 -20.07485 -19.86888 -18.99701 -17.24836 -16.80775 -16.14400 -15.95385 -15.38566 -15.28108 -14.92791 -14.64904 -14.13299 -14.06855 -13.64066 -13.49310 -13.35244 -13.03613 -12.86636 -12.79495 -12.53782 -12.40146 -11.50972 -11.33834 -11.23421 -11.10200 -10.87949 -10.69706 -10.59002 -10.41121 -10.28465 -10.24174 -10.21622 -9.97168 -9.81055 -9.68136 -9.48288 -9.33230 -9.10618 -9.07033 -8.38200 -8.30119 -6.46278 -5.70274 -3.22073 1.00145 1.21868 2.26257 2.87706 3.45189 3.52097 3.55681 3.64237 3.68588 4.29757 4.48689 4.62571 4.77981 4.83577 4.90171 5.07295 5.18848 5.29907 5.38669 5.39697 5.43751 5.48609 5.53582 5.71344 5.78312 5.82402 5.83092 6.06120 6.13921 6.20523 6.23886 6.30300 6.30467 6.33246 6.36992 6.48027 6.57460 6.63193 6.65175 6.76571 6.88069 6.92854 6.99057 7.09522 7.19893 7.26292 7.43270 7.71091 7.98374 8.65290 9.28842 9.36827 9.93406 10.48323 11.33960 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.003472 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.349788 B = 8062.359718 C = 9222.128439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.024 3.976 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.058 0.942 9 N -0.565 5.565 10 C 0.214 3.786 11 C 0.006 3.994 12 C -0.079 4.079 13 N -0.301 5.301 14 C 0.163 3.837 15 C -0.110 4.110 16 C -0.098 4.098 17 C -0.125 4.125 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.082 4.082 21 N -0.102 5.102 22 N -0.249 5.249 23 C 0.173 3.827 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.132 4.132 28 H 0.256 0.744 29 H 0.042 0.958 30 H 0.114 0.886 31 H 0.175 0.825 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -13.263 -12.751 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.075 0.925 9 N -0.283 5.283 10 C 0.085 3.915 11 C -0.134 4.134 12 C -0.228 4.228 13 N -0.096 5.096 14 C 0.041 3.959 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.129 4.129 19 C -0.141 4.141 20 C -0.100 4.100 21 N -0.081 5.081 22 N -0.116 5.116 23 C 0.066 3.934 24 C -0.169 4.169 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.172 4.172 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.192 0.808 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.762 -11.966 -13.530 18.272 hybrid contribution 0.068 -0.203 0.395 0.449 sum 2.831 -12.169 -13.136 18.129 Atomic orbital electron populations 1.69832 1.05585 1.26060 1.51756 1.25049 0.94907 0.98411 0.99248 0.86507 0.79388 0.83512 0.78211 1.20486 1.21770 1.21130 1.18735 0.94260 0.85018 1.39752 0.92468 1.43826 1.51533 1.03168 1.29750 1.19453 0.89254 1.03801 0.78952 1.23914 1.01407 0.88209 0.99906 1.23337 1.05453 1.02208 0.91835 1.47258 1.36570 1.08131 1.17641 1.20719 1.01557 0.90248 0.83354 1.19730 0.95807 1.00494 0.95028 1.21060 0.95079 0.99573 0.95947 1.21119 0.99812 0.98615 0.94787 1.21223 0.94373 0.97466 0.99834 1.21169 0.96730 1.00131 0.96107 1.21093 0.99792 0.95261 0.93874 1.78239 1.21331 0.89651 1.18908 1.75157 1.09875 1.26603 0.99945 1.21028 0.92391 0.88296 0.91723 1.22806 0.95937 1.01258 0.96869 1.22440 0.96436 0.98841 0.98409 1.22242 0.96617 1.00233 0.96374 1.22560 0.99323 0.99854 0.95448 0.93436 0.93979 0.86893 0.80765 0.88289 0.87506 0.85974 0.85887 0.85995 0.85777 0.85573 0.93589 0.89541 0.93615 0.92983 0.92880 0.93591 0.91954 0.94165 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.43 55.49 0.63 -24.70 16 2 C 0.02 0.67 4.96 -17.43 -0.09 0.58 16 3 Si 0.89 22.65 29.61 -169.99 -5.03 17.62 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.65 7.75 -15.06 -0.12 -6.76 16 8 H 0.06 1.58 7.00 -52.49 -0.37 1.21 16 9 N -0.56 -13.46 2.37 -165.75 -0.39 -13.85 16 10 C 0.21 4.98 5.82 -5.19 -0.03 4.95 16 11 C 0.01 0.13 6.83 -82.78 -0.57 -0.43 16 12 C -0.08 -1.34 11.50 -17.05 -0.20 -1.54 16 13 N -0.30 -4.90 3.43 -62.45 -0.21 -5.11 16 14 C 0.16 1.79 6.58 -5.20 -0.03 1.76 16 15 C -0.11 -1.24 5.25 -104.63 -0.55 -1.79 16 16 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 17 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 18 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 19 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 20 C -0.08 -0.92 9.70 -39.58 -0.38 -1.31 16 21 N -0.10 -2.11 12.92 60.35 0.78 -1.33 16 22 N -0.25 -5.95 12.41 33.29 0.41 -5.54 16 23 C 0.17 3.49 3.41 -66.82 -0.23 3.27 16 24 C -0.13 -2.53 6.42 -25.03 -0.16 -2.69 16 25 C -0.12 -2.01 6.91 -24.70 -0.17 -2.18 16 26 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 27 C -0.13 -2.49 6.15 -25.61 -0.16 -2.65 16 28 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 29 H 0.04 0.88 7.95 -51.93 -0.41 0.47 16 30 H 0.11 3.06 5.47 -51.93 -0.28 2.78 16 31 H 0.18 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.11 0.84 8.01 -51.93 -0.42 0.42 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.05 0.86 7.85 -51.93 -0.41 0.45 16 40 H 0.09 2.00 7.17 -51.93 -0.37 1.63 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 1.53 6.79 -51.93 -0.35 1.18 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -32.21 385.30 -9.68 -41.89 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.24 Total: 2.27 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -4.43 Total: -17.07 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 1.22 Total: -50.52 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.21 -9.68 -41.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775603249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.847 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds