Wall clock time and date at job start Tue Mar 31 2020 14:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00309 * 2 1 4 4 H 1.48500 * 109.46893 * 239.99775 * 3 2 1 5 5 H 1.48495 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47062 * 120.00017 * 3 2 1 7 7 C 1.38819 * 119.99315 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99460 * 201.45249 * 7 2 1 9 9 N 1.36936 * 120.00451 * 21.45053 * 7 2 1 10 10 C 1.46503 * 119.99697 * 36.99085 * 9 7 2 11 11 C 1.50703 * 109.47002 * 90.00030 * 10 9 7 12 12 C 1.35349 * 126.74789 * 94.70724 * 11 10 9 13 13 N 1.35316 * 106.17503 * 179.85424 * 12 11 10 14 14 C 1.46498 * 125.87230 * 180.12261 * 13 12 11 15 15 C 1.50694 * 109.47245 * 125.32392 * 14 13 12 16 16 C 1.38235 * 120.00077 * 269.72640 * 15 14 13 17 17 C 1.38236 * 120.00135 * 179.76775 * 16 15 14 18 18 C 1.38235 * 119.99887 * 0.50797 * 17 16 15 19 19 C 1.38233 * 119.99959 * 359.74077 * 18 17 16 20 20 C 1.38235 * 120.00082 * 90.00212 * 15 14 13 21 21 N 1.28722 * 108.26175 * 0.41593 * 13 12 11 22 22 N 1.28633 * 110.17681 * 359.73870 * 21 13 12 23 23 C 1.46500 * 119.99980 * 217.26627 * 9 7 2 24 24 C 1.54266 * 110.03154 * 61.25542 * 23 9 7 25 25 C 1.54962 * 104.15908 * 217.13745 * 24 23 9 26 26 C 1.54883 * 102.78046 * 37.88712 * 25 24 23 27 27 C 1.53866 * 110.03099 * 304.03740 * 23 9 7 28 28 H 0.97002 * 119.99892 * 354.92956 * 1 2 3 29 29 H 1.08996 * 109.46753 * 210.00222 * 10 9 7 30 30 H 1.08998 * 109.47235 * 330.00437 * 10 9 7 31 31 H 1.08003 * 126.91563 * 0.02562 * 12 11 10 32 32 H 1.08997 * 109.46667 * 245.32524 * 14 13 12 33 33 H 1.08997 * 109.47012 * 5.32406 * 14 13 12 34 34 H 1.08006 * 120.00006 * 0.02562 * 16 15 14 35 35 H 1.08001 * 120.00408 * 180.23275 * 17 16 15 36 36 H 1.08002 * 120.00334 * 179.72890 * 18 17 16 37 37 H 1.08003 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00354 * 359.97438 * 20 15 14 39 39 H 1.08998 * 110.01213 * 182.64252 * 23 9 7 40 40 H 1.09003 * 110.48792 * 335.78424 * 24 23 9 41 41 H 1.08994 * 110.48985 * 98.42577 * 24 23 9 42 42 H 1.09002 * 110.71788 * 279.57332 * 25 24 23 43 43 H 1.09004 * 110.92431 * 156.29635 * 25 24 23 44 44 H 1.09001 * 110.48778 * 203.40811 * 26 25 24 45 45 H 1.09007 * 110.60168 * 80.81654 * 26 25 24 46 46 H 1.09000 * 110.03192 * 238.56475 * 27 23 9 47 47 H 1.08999 * 110.03999 * 359.97438 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0340 -1.2346 0.3426 9 7 1.3965 -2.3473 -0.4326 10 6 0.4629 -2.2963 -1.5605 11 6 1.2169 -2.5140 -2.8470 12 6 1.3846 -3.6885 -3.4985 13 7 2.1199 -3.4073 -4.5992 14 6 2.5502 -4.3726 -5.6137 15 6 2.1016 -3.9051 -6.9742 16 6 0.8700 -4.2938 -7.4672 17 6 0.4564 -3.8611 -8.7133 18 6 1.2788 -3.0482 -9.4707 19 6 2.5126 -2.6636 -8.9798 20 6 2.9240 -3.0922 -7.7316 21 7 2.3814 -2.1470 -4.5984 22 7 1.8571 -1.5856 -3.5666 23 6 1.6691 -3.6222 0.2357 24 6 1.2393 -3.5457 1.7153 25 6 2.3204 -4.3630 2.4667 26 6 3.6186 -3.9940 1.7070 27 6 3.1811 -3.9074 0.2301 28 1 -0.4850 0.8368 0.0742 29 1 -0.2901 -3.0757 -1.4442 30 1 -0.0240 -1.3214 -1.5853 31 1 1.0053 -4.6551 -3.2014 32 1 3.6369 -4.4558 -5.5981 33 1 2.1082 -5.3457 -5.3999 34 1 0.2292 -4.9323 -6.8772 35 1 -0.5073 -4.1617 -9.0969 36 1 0.9576 -2.7136 -10.4460 37 1 3.1553 -2.0288 -9.5717 38 1 3.8879 -2.7917 -7.3482 39 1 1.1351 -4.4285 -0.2670 40 1 1.2362 -2.5112 2.0587 41 1 0.2563 -3.9965 1.8508 42 1 2.1185 -5.4315 2.3902 43 1 2.3837 -4.0572 3.5111 44 1 4.3710 -4.7720 1.8370 45 1 4.0025 -3.0325 2.0481 46 1 3.3809 -4.8528 -0.2744 47 1 3.7122 -3.0976 -0.2701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775603249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:10 Heat of formation + Delta-G solvation = 124.828732 kcal Electronic energy + Delta-G solvation = -27600.127700 eV Core-core repulsion = 23977.717711 eV Total energy + Delta-G solvation = -3622.409989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.91988 -40.17237 -39.26696 -36.38013 -35.58923 -33.27619 -32.28953 -31.89408 -31.74318 -29.29791 -28.44461 -27.82694 -27.50853 -24.40344 -23.55129 -23.32509 -22.34308 -21.41193 -21.25091 -20.69389 -18.50653 -18.00485 -17.61392 -17.08839 -17.03821 -16.31935 -16.13289 -15.94757 -15.87197 -15.52740 -15.00768 -14.77302 -14.52065 -14.34906 -14.11658 -13.98541 -13.63499 -13.50416 -13.10492 -13.00218 -12.75775 -12.49000 -12.31249 -12.25077 -12.14252 -11.97161 -11.88999 -11.81267 -11.68929 -11.66629 -11.32826 -11.27743 -11.11705 -10.76992 -10.40034 -9.91188 -9.87289 -9.81049 -8.41158 -7.77377 -5.29741 0.19310 0.45165 0.89281 1.40285 1.47195 1.53679 1.78428 1.87418 2.55981 2.88237 3.34992 3.45927 3.69370 3.79516 3.83632 4.05174 4.06508 4.07110 4.11263 4.22762 4.32979 4.34691 4.38818 4.51293 4.56910 4.64742 4.74713 4.80420 4.83878 4.98057 4.99429 5.00137 5.02593 5.08900 5.21867 5.25535 5.32179 5.37519 5.46620 5.48406 5.55572 5.56287 5.57864 5.70769 5.76479 5.78152 5.90479 5.94497 6.03308 6.60125 7.28236 7.85682 8.00664 8.47748 9.22427 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.003472 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.349788 B = 8062.359718 C = 9222.128439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.020 4.020 3 Si 0.932 3.068 4 H -0.296 1.296 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.234 4.234 8 H 0.042 0.958 9 N -0.576 5.576 10 C 0.219 3.781 11 C -0.027 4.027 12 C -0.047 4.047 13 N -0.282 5.282 14 C 0.153 3.847 15 C -0.125 4.125 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.102 4.102 21 N -0.124 5.124 22 N -0.310 5.310 23 C 0.165 3.835 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.125 4.125 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.224 0.776 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 -17.080 -13.522 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.217 4.217 3 Si 0.763 3.237 4 H -0.224 1.224 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.059 0.941 9 N -0.294 5.294 10 C 0.091 3.909 11 C -0.168 4.168 12 C -0.198 4.198 13 N -0.077 5.077 14 C 0.034 3.966 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.152 4.152 18 C -0.134 4.134 19 C -0.154 4.154 20 C -0.120 4.120 21 N -0.102 5.102 22 N -0.177 5.177 23 C 0.059 3.941 24 C -0.168 4.168 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.164 4.164 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.131 0.869 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.893 -15.795 -14.324 21.518 hybrid contribution 0.063 0.848 0.476 0.975 sum 2.957 -14.947 -13.847 20.589 Atomic orbital electron populations 1.69928 1.06178 1.25700 1.53890 1.25453 0.95426 1.00177 1.00656 0.85882 0.78427 0.81843 0.77559 1.22390 1.21759 1.20108 1.18712 0.93504 0.86405 1.37826 0.94080 1.43952 1.51245 1.03588 1.30664 1.19160 0.89616 1.02203 0.79933 1.23635 1.03006 0.89918 1.00275 1.23785 1.03156 1.02374 0.90478 1.47657 1.34535 1.07593 1.17929 1.21274 1.02919 0.90457 0.81947 1.19819 0.96409 1.01160 0.95212 1.21359 0.94925 0.99738 0.96500 1.21483 1.00733 0.98274 0.94675 1.21574 0.93987 0.96975 1.00815 1.21445 0.97495 1.00386 0.96062 1.21268 1.00083 0.95954 0.94719 1.78125 1.22103 0.91662 1.18347 1.75083 1.11919 1.28994 1.01657 1.21290 0.93713 0.87164 0.91912 1.22708 0.97815 0.99263 0.97025 1.22388 0.94267 0.99968 0.98203 1.22229 0.97792 1.00189 0.95042 1.22450 0.97630 0.99711 0.96642 0.94174 0.91842 0.91284 0.75955 0.86882 0.83283 0.84201 0.83745 0.83779 0.84412 0.85993 0.91067 0.94163 0.92719 0.89846 0.92081 0.90473 0.94280 0.91288 0.94991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.28 11.43 21.65 0.25 -54.03 16 2 C -0.02 -1.14 4.96 84.86 0.42 -0.72 16 3 Si 0.93 48.57 29.61 68.60 2.03 50.60 16 4 H -0.30 -16.13 7.11 99.48 0.71 -15.43 16 5 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.23 -12.98 7.75 84.04 0.65 -12.33 16 8 H 0.04 2.38 7.00 -2.91 -0.02 2.36 16 9 N -0.58 -27.73 2.37 -678.33 -1.61 -29.34 16 10 C 0.22 10.31 5.82 85.63 0.50 10.81 16 11 C -0.03 -1.16 6.83 41.60 0.28 -0.88 16 12 C -0.05 -1.45 11.50 83.49 0.96 -0.49 16 13 N -0.28 -8.56 3.43 -351.48 -1.21 -9.77 16 14 C 0.15 2.87 6.58 85.63 0.56 3.43 16 15 C -0.13 -2.58 5.25 -19.87 -0.10 -2.68 16 16 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 17 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 18 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 19 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 20 C -0.10 -2.22 9.70 22.27 0.22 -2.00 16 21 N -0.12 -5.09 12.92 37.02 0.48 -4.61 16 22 N -0.31 -15.22 12.41 -48.60 -0.60 -15.82 16 23 C 0.17 6.41 3.41 45.71 0.16 6.57 16 24 C -0.13 -4.88 6.42 31.69 0.20 -4.68 16 25 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 26 C -0.11 -3.61 6.83 31.67 0.22 -3.40 16 27 C -0.13 -4.45 6.15 31.32 0.19 -4.26 16 28 H 0.25 14.58 8.32 -92.71 -0.77 13.81 16 29 H 0.06 2.60 7.95 -2.39 -0.02 2.58 16 30 H 0.07 3.91 5.47 -2.39 -0.01 3.90 16 31 H 0.22 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.11 1.85 8.09 -2.39 -0.02 1.83 16 33 H 0.15 1.54 8.01 -2.39 -0.02 1.52 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.07 2.39 7.85 -2.39 -0.02 2.38 16 40 H 0.04 1.89 7.17 -2.39 -0.02 1.88 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.03 1.37 6.79 -2.39 -0.02 1.36 16 Total: -1.00 -75.80 385.30 5.66 -70.14 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.95 Total: 14.45 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 5.37 Total: -21.62 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -2.69 Total: -113.57 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -75.80 5.66 -70.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775603249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.973 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds