Wall clock time and date at job start Tue Mar 31 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48497 * 109.46979 * 269.99548 * 3 2 1 5 5 H 1.48501 * 109.47003 * 29.99677 * 3 2 1 6 6 H 1.48494 * 109.47434 * 149.99587 * 3 2 1 7 7 C 1.37885 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99285 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99961 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46788 * 176.70762 * 9 7 2 11 11 C 1.46896 * 111.00327 * 75.55568 * 10 9 7 12 12 C 1.50699 * 109.47400 * 190.00065 * 11 10 9 13 13 C 1.35356 * 126.75088 * 94.99531 * 12 11 10 14 14 N 1.35319 * 106.17209 * 180.02562 * 13 12 11 15 15 C 1.46497 * 125.86577 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47042 * 125.00185 * 15 14 13 17 17 C 1.38237 * 119.99755 * 269.72469 * 16 15 14 18 18 C 1.38237 * 119.99859 * 179.76579 * 17 16 15 19 19 C 1.38233 * 119.99796 * 0.50541 * 18 17 16 20 20 C 1.38238 * 120.00140 * 359.75257 * 19 18 17 21 21 C 1.38230 * 119.99928 * 359.97438 * 20 19 18 22 22 N 1.28716 * 108.26134 * 359.97438 * 14 13 12 23 23 N 1.28629 * 110.18004 * 0.02562 * 22 14 13 24 24 C 1.46902 * 111.00013 * 199.50677 * 10 9 7 25 25 C 1.53007 * 109.46930 * 71.71077 * 24 10 9 26 26 C 1.52996 * 117.49747 * 244.13086 * 25 24 10 27 27 C 1.52997 * 117.49644 * 175.47083 * 25 24 10 28 28 H 0.96999 * 119.99882 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47275 * 56.70533 * 9 7 2 30 30 H 1.09001 * 109.47167 * 296.70034 * 9 7 2 31 31 H 1.08992 * 109.47608 * 69.99607 * 11 10 9 32 32 H 1.09001 * 109.46996 * 309.99772 * 11 10 9 33 33 H 1.07998 * 126.91382 * 0.02562 * 13 12 11 34 34 H 1.09005 * 109.47328 * 244.99972 * 15 14 13 35 35 H 1.09003 * 109.47037 * 5.00312 * 15 14 13 36 36 H 1.08004 * 120.00441 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00458 * 180.23239 * 18 17 16 38 38 H 1.08004 * 120.00190 * 179.72319 * 19 18 17 39 39 H 1.08004 * 120.00036 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00315 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47338 * 191.71143 * 24 10 9 42 42 H 1.08999 * 109.46990 * 311.71693 * 24 10 9 43 43 H 1.08996 * 115.55102 * 29.79774 * 25 24 10 44 44 H 1.09003 * 117.49994 * 359.97438 * 26 25 24 45 45 H 1.08996 * 117.49934 * 145.02011 * 26 25 24 46 46 H 1.09006 * 117.49554 * 214.97736 * 27 25 24 47 47 H 1.08996 * 117.50123 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5767 0.0812 11 6 3.8547 -3.2626 -1.2095 12 6 4.1324 -4.7331 -1.0313 13 6 3.2198 -5.7095 -0.8174 14 7 3.9190 -6.8639 -0.7189 15 6 3.3512 -8.1940 -0.4855 16 6 3.8044 -9.1318 -1.5748 17 6 3.0501 -9.2712 -2.7248 18 6 3.4682 -10.1277 -3.7260 19 6 4.6352 -10.8526 -3.5727 20 6 5.3868 -10.7171 -2.4204 21 6 4.9716 -9.8564 -1.4216 22 7 5.1686 -6.5923 -0.8654 23 7 5.3293 -5.3300 -1.0533 24 6 5.3953 -2.6156 0.5427 25 6 5.4508 -2.2551 2.0286 26 6 6.1941 -0.9757 2.4178 27 6 6.8095 -2.3428 2.7265 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6297 0.8601 30 1 3.8752 -0.7324 -0.9169 31 1 4.5611 -2.8437 -1.9260 32 1 2.8384 -3.1271 -1.5797 33 1 2.1491 -5.5912 -0.7407 34 1 3.6892 -8.5691 0.4806 35 1 2.2631 -8.1305 -0.4902 36 1 2.1358 -8.7085 -2.8425 37 1 2.8809 -10.2339 -4.6261 38 1 4.9597 -11.5251 -4.3530 39 1 6.2984 -11.2838 -2.3005 40 1 5.5584 -9.7509 -0.5212 41 1 5.7985 -3.6176 0.3966 42 1 5.9868 -1.8992 -0.0273 43 1 4.5682 -2.5210 2.6102 44 1 6.6439 -0.3910 1.6153 45 1 5.8007 -0.4001 3.2557 46 1 6.8207 -2.6661 3.7674 47 1 7.6637 -2.6578 2.1272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775609175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:04 Heat of formation + Delta-G solvation = 161.603983 kcal Electronic energy + Delta-G solvation = -26810.072147 eV Core-core repulsion = 23189.256853 eV Total energy + Delta-G solvation = -3620.815294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.97995 -39.55088 -37.84856 -35.74030 -34.86253 -32.51679 -31.53402 -31.27204 -31.08586 -28.14804 -27.21676 -26.77215 -23.88460 -22.93077 -22.56031 -22.03184 -21.49760 -21.05742 -20.25520 -19.49483 -17.43777 -16.96795 -16.78544 -16.33337 -15.55919 -15.41610 -15.24148 -14.71051 -14.59944 -14.26877 -13.94052 -13.75423 -13.61865 -13.37606 -13.08236 -12.98808 -12.72366 -12.35090 -12.07179 -11.97276 -11.61643 -11.50603 -11.36896 -11.19565 -11.10451 -10.86906 -10.63856 -10.51607 -10.31039 -9.93916 -9.87926 -9.73705 -9.36029 -9.25830 -9.24127 -9.22174 -8.80022 -8.53952 -7.34535 -6.02810 -3.98809 0.84392 1.08904 1.86982 2.54951 2.85839 3.31117 3.38990 3.42535 3.52881 4.10797 4.21502 4.32465 4.45483 4.62222 4.66771 4.76639 4.78585 4.86662 4.95983 5.15945 5.20671 5.26109 5.30209 5.31371 5.35867 5.48860 5.58073 5.60945 5.69433 5.80351 5.92206 5.95008 6.09557 6.13946 6.17259 6.18299 6.21394 6.27172 6.34175 6.39289 6.45483 6.63171 6.63674 6.77145 6.79788 6.94205 7.00772 7.68208 7.96267 8.06713 8.69658 8.81447 9.05898 9.60291 11.10373 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002857 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.806191 B = 9796.881788 C =11177.285335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.160 3.840 10 N -0.519 5.519 11 C 0.144 3.856 12 C 0.001 3.999 13 C -0.033 4.033 14 N -0.295 5.295 15 C 0.160 3.840 16 C -0.114 4.114 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.081 4.081 22 N -0.090 5.090 23 N -0.270 5.270 24 C 0.080 3.920 25 C -0.128 4.128 26 C -0.184 4.184 27 C -0.186 4.186 28 H 0.262 0.738 29 H 0.037 0.963 30 H -0.015 1.015 31 H 0.039 0.961 32 H 0.103 0.897 33 H 0.191 0.809 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 -20.196 -2.765 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.542 4.542 8 H 0.098 0.902 9 C 0.034 3.966 10 N -0.243 5.243 11 C 0.014 3.986 12 C -0.136 4.136 13 C -0.183 4.183 14 N -0.089 5.089 15 C 0.040 3.960 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.143 4.143 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.100 4.100 22 N -0.069 5.069 23 N -0.138 5.138 24 C -0.049 4.049 25 C -0.147 4.147 26 C -0.222 4.222 27 C -0.224 4.224 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.002 0.998 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.208 0.792 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.036 -20.896 -2.450 22.898 hybrid contribution -0.350 1.749 -0.484 1.848 sum 8.686 -19.147 -2.934 21.229 Atomic orbital electron populations 1.69883 1.06093 1.26730 1.51498 1.24870 0.94678 0.98744 0.94978 0.86930 0.80585 0.84218 0.78505 1.20399 1.21304 1.18910 1.21042 0.88785 0.94553 1.49787 0.90186 1.20252 0.96936 0.83972 0.95393 1.61904 1.17455 1.18888 1.26052 1.20260 1.02514 0.84401 0.91400 1.22071 0.88715 0.97920 1.04899 1.23448 1.01001 0.84833 1.09043 1.47280 1.06119 1.08174 1.47343 1.20864 0.99553 0.77229 0.98398 1.19704 0.96991 0.98785 0.96055 1.21106 0.99625 0.97859 0.92920 1.21149 0.97075 0.97062 0.98981 1.21254 0.94902 0.98966 0.97565 1.21174 0.99975 0.99076 0.93968 1.21085 0.94773 0.94769 0.99374 1.78184 0.98419 1.11026 1.19287 1.75002 1.23631 0.98275 1.16853 1.21731 0.90224 1.00732 0.92196 1.22278 0.95128 1.00433 0.96866 1.22999 1.04887 0.90897 1.03370 1.22922 0.97368 1.01201 1.00883 0.92775 0.94500 0.99776 0.94283 0.87882 0.79211 0.87717 0.86806 0.85758 0.85760 0.85917 0.85725 0.85545 0.90159 0.95814 0.87080 0.89365 0.89240 0.89375 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 21.36 27.54 -169.99 -4.68 16.68 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.28 6.45 56.52 0.36 -5.92 16 7 C -0.50 -13.83 9.15 -34.44 -0.31 -14.15 16 8 H 0.08 2.36 7.93 -52.49 -0.42 1.94 16 9 C 0.16 3.84 3.67 -4.98 -0.02 3.82 16 10 N -0.52 -10.88 4.37 -237.52 -1.04 -11.92 16 11 C 0.14 2.76 5.35 -4.98 -0.03 2.73 16 12 C 0.00 0.03 6.01 -82.78 -0.50 -0.47 16 13 C -0.03 -0.48 11.50 -17.04 -0.20 -0.68 16 14 N -0.30 -3.92 3.43 -62.44 -0.21 -4.13 16 15 C 0.16 1.41 6.58 -5.19 -0.03 1.38 16 16 C -0.11 -1.06 5.25 -104.62 -0.55 -1.61 16 17 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 18 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 19 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.08 -0.74 9.70 -39.59 -0.38 -1.13 16 22 N -0.09 -1.47 12.92 60.35 0.78 -0.69 16 23 N -0.27 -4.90 11.07 33.29 0.37 -4.53 16 24 C 0.08 1.51 5.11 -3.82 -0.02 1.49 16 25 C -0.13 -2.27 4.96 -90.62 -0.45 -2.72 16 26 C -0.18 -2.96 9.97 -26.70 -0.27 -3.23 16 27 C -0.19 -2.73 10.25 -26.70 -0.27 -3.01 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.04 0.91 5.76 -51.93 -0.30 0.61 16 30 H -0.02 -0.37 7.60 -51.93 -0.39 -0.77 16 31 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.10 2.03 7.34 -51.93 -0.38 1.65 16 33 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 34 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.11 0.70 8.01 -51.93 -0.42 0.29 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.08 1.53 5.90 -51.93 -0.31 1.22 16 42 H 0.02 0.45 7.79 -51.93 -0.40 0.05 16 43 H 0.11 2.12 8.14 -51.93 -0.42 1.69 16 44 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -32.93 390.58 -10.11 -43.04 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.28 Total: 3.08 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -4.70 Total: -21.08 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.67 Total: -47.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.68 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.93 -10.11 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775609175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.643 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds