Wall clock time and date at job start Tue Mar 31 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48497 * 109.46979 * 269.99548 * 3 2 1 5 5 H 1.48501 * 109.47003 * 29.99677 * 3 2 1 6 6 H 1.48494 * 109.47434 * 149.99587 * 3 2 1 7 7 C 1.37885 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99285 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99961 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46788 * 176.70762 * 9 7 2 11 11 C 1.46896 * 111.00327 * 75.55568 * 10 9 7 12 12 C 1.50699 * 109.47400 * 190.00065 * 11 10 9 13 13 C 1.35356 * 126.75088 * 94.99531 * 12 11 10 14 14 N 1.35319 * 106.17209 * 180.02562 * 13 12 11 15 15 C 1.46497 * 125.86577 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47042 * 125.00185 * 15 14 13 17 17 C 1.38237 * 119.99755 * 269.72469 * 16 15 14 18 18 C 1.38237 * 119.99859 * 179.76579 * 17 16 15 19 19 C 1.38233 * 119.99796 * 0.50541 * 18 17 16 20 20 C 1.38238 * 120.00140 * 359.75257 * 19 18 17 21 21 C 1.38230 * 119.99928 * 359.97438 * 20 19 18 22 22 N 1.28716 * 108.26134 * 359.97438 * 14 13 12 23 23 N 1.28629 * 110.18004 * 0.02562 * 22 14 13 24 24 C 1.46902 * 111.00013 * 199.50677 * 10 9 7 25 25 C 1.53007 * 109.46930 * 71.71077 * 24 10 9 26 26 C 1.52996 * 117.49747 * 244.13086 * 25 24 10 27 27 C 1.52997 * 117.49644 * 175.47083 * 25 24 10 28 28 H 0.96999 * 119.99882 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47275 * 56.70533 * 9 7 2 30 30 H 1.09001 * 109.47167 * 296.70034 * 9 7 2 31 31 H 1.08992 * 109.47608 * 69.99607 * 11 10 9 32 32 H 1.09001 * 109.46996 * 309.99772 * 11 10 9 33 33 H 1.07998 * 126.91382 * 0.02562 * 13 12 11 34 34 H 1.09005 * 109.47328 * 244.99972 * 15 14 13 35 35 H 1.09003 * 109.47037 * 5.00312 * 15 14 13 36 36 H 1.08004 * 120.00441 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00458 * 180.23239 * 18 17 16 38 38 H 1.08004 * 120.00190 * 179.72319 * 19 18 17 39 39 H 1.08004 * 120.00036 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00315 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47338 * 191.71143 * 24 10 9 42 42 H 1.08999 * 109.46990 * 311.71693 * 24 10 9 43 43 H 1.08996 * 115.55102 * 29.79774 * 25 24 10 44 44 H 1.09003 * 117.49994 * 359.97438 * 26 25 24 45 45 H 1.08996 * 117.49934 * 145.02011 * 26 25 24 46 46 H 1.09006 * 117.49554 * 214.97736 * 27 25 24 47 47 H 1.08996 * 117.50123 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5767 0.0812 11 6 3.8547 -3.2626 -1.2095 12 6 4.1324 -4.7331 -1.0313 13 6 3.2198 -5.7095 -0.8174 14 7 3.9190 -6.8639 -0.7189 15 6 3.3512 -8.1940 -0.4855 16 6 3.8044 -9.1318 -1.5748 17 6 3.0501 -9.2712 -2.7248 18 6 3.4682 -10.1277 -3.7260 19 6 4.6352 -10.8526 -3.5727 20 6 5.3868 -10.7171 -2.4204 21 6 4.9716 -9.8564 -1.4216 22 7 5.1686 -6.5923 -0.8654 23 7 5.3293 -5.3300 -1.0533 24 6 5.3953 -2.6156 0.5427 25 6 5.4508 -2.2551 2.0286 26 6 6.1941 -0.9757 2.4178 27 6 6.8095 -2.3428 2.7265 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6297 0.8601 30 1 3.8752 -0.7324 -0.9169 31 1 4.5611 -2.8437 -1.9260 32 1 2.8384 -3.1271 -1.5797 33 1 2.1491 -5.5912 -0.7407 34 1 3.6892 -8.5691 0.4806 35 1 2.2631 -8.1305 -0.4902 36 1 2.1358 -8.7085 -2.8425 37 1 2.8809 -10.2339 -4.6261 38 1 4.9597 -11.5251 -4.3530 39 1 6.2984 -11.2838 -2.3005 40 1 5.5584 -9.7509 -0.5212 41 1 5.7985 -3.6176 0.3966 42 1 5.9868 -1.8992 -0.0273 43 1 4.5682 -2.5210 2.6102 44 1 6.6439 -0.3910 1.6153 45 1 5.8007 -0.4001 3.2557 46 1 6.8207 -2.6661 3.7674 47 1 7.6637 -2.6578 2.1272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775609175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:04 Heat of formation + Delta-G solvation = 142.757503 kcal Electronic energy + Delta-G solvation = -26810.889392 eV Core-core repulsion = 23189.256853 eV Total energy + Delta-G solvation = -3621.632539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.17535 -40.19436 -39.32876 -37.12167 -35.92093 -34.57689 -32.54817 -32.37580 -31.84486 -30.03255 -28.38473 -27.86870 -25.59870 -23.60121 -23.47044 -23.25000 -22.92728 -22.35937 -21.39778 -21.00620 -18.90747 -18.36087 -17.84856 -17.27897 -16.90585 -16.50111 -16.20600 -16.06054 -15.86328 -15.59852 -15.42558 -15.13043 -14.59528 -14.34828 -14.31800 -14.16550 -13.80738 -13.63822 -13.49115 -13.33083 -13.28864 -12.68616 -12.52339 -12.37932 -12.26587 -12.22112 -12.11171 -11.97409 -11.78283 -11.67106 -11.46973 -11.13970 -10.97728 -10.73033 -10.65550 -10.11352 -9.87651 -9.85931 -9.02606 -8.21808 -6.22358 0.16799 0.45499 0.71482 1.37401 1.39504 1.49733 1.51585 1.63775 2.39362 2.87065 2.92594 3.11063 3.24693 3.38945 3.55067 3.71914 3.92330 3.97846 4.07134 4.07445 4.11891 4.20856 4.23617 4.25782 4.33489 4.50378 4.54510 4.58291 4.66169 4.69458 4.74682 4.76800 4.83953 4.93576 4.99068 4.99682 5.05410 5.09559 5.13399 5.24763 5.27193 5.40078 5.48523 5.54518 5.56562 5.62727 5.72464 6.02980 6.06472 6.37918 6.68896 6.82875 7.40521 7.57368 8.94214 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002857 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.806191 B = 9796.881788 C =11177.285335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.014 3.986 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.503 4.503 8 H 0.047 0.953 9 C 0.173 3.827 10 N -0.528 5.528 11 C 0.151 3.849 12 C -0.022 4.022 13 C -0.023 4.023 14 N -0.279 5.279 15 C 0.151 3.849 16 C -0.127 4.127 17 C -0.109 4.109 18 C -0.135 4.135 19 C -0.114 4.114 20 C -0.134 4.134 21 C -0.096 4.096 22 N -0.101 5.101 23 N -0.297 5.297 24 C 0.088 3.912 25 C -0.156 4.156 26 C -0.186 4.186 27 C -0.159 4.159 28 H 0.265 0.735 29 H 0.035 0.965 30 H -0.017 1.017 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.214 0.786 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -20.899 -2.508 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.184 4.184 3 Si 0.757 3.243 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.174 1.174 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.047 3.953 10 N -0.252 5.252 11 C 0.021 3.979 12 C -0.160 4.160 13 C -0.175 4.175 14 N -0.073 5.073 15 C 0.032 3.968 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.153 4.153 19 C -0.132 4.132 20 C -0.151 4.151 21 C -0.115 4.115 22 N -0.080 5.080 23 N -0.164 5.164 24 C -0.040 4.040 25 C -0.175 4.175 26 C -0.223 4.223 27 C -0.196 4.196 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.001 0.999 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.230 0.770 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.327 -21.641 -2.191 24.079 hybrid contribution -0.790 1.766 -0.590 2.022 sum 9.538 -19.875 -2.780 22.220 Atomic orbital electron populations 1.70018 1.07811 1.27780 1.53105 1.25670 0.95433 1.02481 0.94785 0.85924 0.79744 0.79645 0.78976 1.19572 1.20977 1.17400 1.21228 0.90663 0.93362 1.48872 0.93427 1.19972 0.94527 0.85841 0.94997 1.61829 1.19060 1.17148 1.27163 1.20081 1.01535 0.85782 0.90491 1.21849 0.89591 0.97408 1.07139 1.23733 1.01703 0.84653 1.07379 1.47605 1.05169 1.09328 1.45215 1.21345 1.01206 0.75054 0.99174 1.19780 0.97381 0.99193 0.96434 1.21351 1.00137 0.98238 0.93021 1.21459 0.97471 0.96855 0.99510 1.21583 0.94653 0.98989 0.97956 1.21465 1.00703 0.99048 0.93926 1.21281 0.94999 0.95267 0.99924 1.78093 0.99854 1.10276 1.19743 1.74941 1.24271 0.99131 1.18080 1.21668 0.88694 1.00586 0.93042 1.22180 0.96352 1.02924 0.95997 1.23074 1.04505 0.91084 1.03589 1.22997 0.95498 0.99456 1.01643 0.92634 0.94704 0.99884 0.94624 0.89268 0.76962 0.86006 0.83885 0.84762 0.84116 0.83835 0.84080 0.85276 0.90295 0.96008 0.88923 0.89241 0.88578 0.87470 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.85 13.96 21.45 0.30 -57.55 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.93 43.85 27.54 68.60 1.89 45.74 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -11.10 6.45 99.48 0.64 -10.46 16 7 C -0.50 -28.19 9.15 25.60 0.23 -27.96 16 8 H 0.05 2.91 7.93 -2.91 -0.02 2.89 16 9 C 0.17 8.31 3.67 85.56 0.31 8.63 16 10 N -0.53 -22.37 4.37 -905.39 -3.96 -26.33 16 11 C 0.15 5.89 5.35 85.56 0.46 6.35 16 12 C -0.02 -0.76 6.01 41.60 0.25 -0.51 16 13 C -0.02 -0.66 11.50 83.49 0.96 0.30 16 14 N -0.28 -7.07 3.43 -351.45 -1.21 -8.28 16 15 C 0.15 2.38 6.58 85.63 0.56 2.95 16 16 C -0.13 -2.19 5.25 -19.87 -0.10 -2.29 16 17 C -0.11 -1.78 9.70 22.27 0.22 -1.57 16 18 C -0.14 -2.02 10.05 22.27 0.22 -1.80 16 19 C -0.11 -1.61 10.05 22.27 0.22 -1.39 16 20 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.10 -1.65 9.70 22.27 0.22 -1.44 16 22 N -0.10 -3.21 12.92 37.02 0.48 -2.73 16 23 N -0.30 -10.77 11.07 -48.60 -0.54 -11.31 16 24 C 0.09 3.32 5.11 86.31 0.44 3.76 16 25 C -0.16 -5.37 4.96 -10.79 -0.05 -5.43 16 26 C -0.19 -5.61 9.97 30.62 0.31 -5.30 16 27 C -0.16 -4.28 10.25 30.62 0.31 -3.96 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.03 1.69 5.76 -2.39 -0.01 1.68 16 30 H -0.02 -0.79 7.60 -2.39 -0.02 -0.81 16 31 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 32 H 0.09 3.66 7.34 -2.39 -0.02 3.64 16 33 H 0.21 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.12 1.54 8.09 -2.38 -0.02 1.52 16 35 H 0.14 1.40 8.01 -2.39 -0.02 1.38 16 36 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.08 3.00 5.90 -2.39 -0.01 2.98 16 42 H 0.02 0.82 7.79 -2.39 -0.02 0.80 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.09 2.67 8.03 -2.39 -0.02 2.66 16 45 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 47 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -71.54 390.58 3.10 -68.45 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.88 Total: 22.24 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 5.25 Total: -30.23 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -4.93 Total: -106.19 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.89 Total: 45.74 kcal Total: -71.54 3.10 -68.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775609175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.207 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds