Wall clock time and date at job start Tue Mar 31 2020 14:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48507 * 109.47307 * 270.00274 * 3 2 1 5 5 H 1.48509 * 109.47068 * 30.00012 * 3 2 1 6 6 H 1.48497 * 109.47245 * 149.99904 * 3 2 1 7 7 C 1.37876 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.53118 * 109.52057 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.28164 * 182.37613 * 10 9 7 12 12 N 1.46843 * 109.52188 * 59.17666 * 11 10 9 13 13 C 1.46898 * 111.00092 * 174.16185 * 12 11 10 14 14 C 1.50698 * 109.47133 * 170.00120 * 13 12 11 15 15 C 1.35352 * 126.75155 * 95.00062 * 14 13 12 16 16 N 1.35316 * 106.17548 * 179.97438 * 15 14 13 17 17 C 1.46503 * 125.86558 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46722 * 124.99902 * 17 16 15 19 19 C 1.38238 * 119.99727 * 90.00230 * 18 17 16 20 20 C 1.38234 * 119.99693 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 C 1.38234 * 120.00207 * 270.01721 * 18 17 16 24 24 N 1.28713 * 108.26381 * 0.26491 * 16 15 14 25 25 N 1.28634 * 110.17641 * 359.55736 * 24 16 15 26 26 C 1.46844 * 111.20141 * 298.26498 * 12 11 10 27 27 C 1.53033 * 109.52677 * 61.73738 * 26 12 11 28 28 H 0.96993 * 120.00082 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.52439 * 300.12858 * 9 7 2 30 30 H 1.09004 * 109.50671 * 62.43584 * 10 9 7 31 31 H 1.09001 * 109.53763 * 302.33527 * 10 9 7 32 32 H 1.09000 * 109.45904 * 299.16462 * 11 10 9 33 33 H 1.09000 * 109.45928 * 179.19159 * 11 10 9 34 34 H 1.09002 * 109.47060 * 50.00621 * 13 12 11 35 35 H 1.08998 * 109.47371 * 290.00219 * 13 12 11 36 36 H 1.08004 * 126.91277 * 0.02562 * 15 14 13 37 37 H 1.09000 * 109.47286 * 5.00381 * 17 16 15 38 38 H 1.08993 * 109.47262 * 244.99719 * 17 16 15 39 39 H 1.07997 * 119.99846 * 359.97438 * 19 18 17 40 40 H 1.07999 * 119.99751 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 43 43 H 1.07999 * 120.00008 * 0.02562 * 23 18 17 44 44 H 1.08998 * 109.46649 * 181.75895 * 26 12 11 45 45 H 1.09007 * 109.45847 * 301.72493 * 26 12 11 46 46 H 1.09005 * 109.50289 * 180.88458 * 27 26 12 47 47 H 1.08999 * 109.53789 * 60.78752 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4754 -4.9851 -0.0604 12 7 0.6535 -5.0195 -1.2768 13 6 0.0072 -6.3287 -1.4387 14 6 -1.0107 -6.2528 -2.5473 15 6 -0.8216 -6.5887 -3.8448 16 7 -2.0003 -6.3602 -4.4689 17 6 -2.2755 -6.5807 -5.8909 18 6 -3.4702 -7.4877 -6.0366 19 6 -4.7413 -6.9497 -6.1114 20 6 -5.8372 -7.7817 -6.2444 21 6 -5.6619 -9.1516 -6.3032 22 6 -4.3912 -9.6899 -6.2235 23 6 -3.2949 -8.8577 -6.0951 24 7 -2.8367 -5.9112 -3.5997 25 7 -2.2791 -5.8408 -2.4426 26 6 -0.3402 -3.9384 -1.2771 27 6 0.3754 -2.5859 -1.2535 28 1 -0.4850 0.8400 0.0004 29 1 0.6228 -2.5569 0.8882 30 1 2.8431 -3.6320 0.9103 31 1 2.8997 -3.5844 -0.8685 32 1 0.8318 -5.0705 0.8152 33 1 2.1807 -5.8160 -0.0751 34 1 -0.4887 -6.6066 -0.5086 35 1 0.7597 -7.0772 -1.6870 36 1 0.0870 -6.9643 -4.2918 37 1 -1.4081 -7.0440 -6.3613 38 1 -2.4835 -5.6256 -6.3731 39 1 -4.8783 -5.8795 -6.0650 40 1 -6.8304 -7.3614 -6.3025 41 1 -6.5182 -9.8016 -6.4068 42 1 -4.2546 -10.7604 -6.2650 43 1 -2.3018 -9.2780 -6.0360 44 1 -0.9537 -4.0091 -2.1753 45 1 -0.9753 -4.0287 -0.3957 46 1 -0.3627 -1.7839 -1.2378 47 1 0.9999 -2.4884 -2.1415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775661284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:14 Heat of formation + Delta-G solvation = 127.672804 kcal Electronic energy + Delta-G solvation = -26888.227213 eV Core-core repulsion = 23265.940552 eV Total energy + Delta-G solvation = -3622.286661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.18265 -39.63645 -38.14035 -35.30918 -34.00921 -32.01885 -31.61355 -31.31142 -30.31800 -29.65260 -27.29310 -26.68432 -24.47777 -23.02027 -22.70842 -22.19757 -21.73324 -21.19532 -20.32104 -18.44280 -17.54719 -17.11990 -16.51895 -16.24711 -15.58976 -15.46609 -14.92408 -14.84228 -14.50450 -14.34383 -13.83505 -13.70487 -13.56104 -13.21042 -13.02136 -12.86640 -12.71811 -12.29071 -12.05228 -11.86228 -11.69634 -11.44798 -11.30523 -11.27092 -10.88551 -10.74723 -10.59333 -10.35375 -10.10584 -9.95902 -9.88541 -9.33860 -9.31804 -9.29965 -9.09966 -8.84356 -8.58245 -8.20691 -7.64384 -5.88354 -3.94076 0.75980 1.01564 1.69303 2.40729 2.66889 3.36180 3.42667 3.44712 3.45803 3.99430 4.21327 4.44138 4.51489 4.58373 4.62915 4.70711 4.72396 4.86547 4.95587 5.08831 5.16529 5.20004 5.41221 5.49745 5.56662 5.62810 5.72088 5.81273 5.96161 6.01877 6.05963 6.11149 6.13086 6.24595 6.25491 6.41699 6.48611 6.55546 6.61183 6.73514 6.79433 6.96614 7.16829 7.25387 7.54827 7.70755 7.78487 7.92231 8.15019 8.27298 8.57295 8.66152 9.09900 9.69744 11.17598 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.002371 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.789610 B =11806.851993 C =12582.740421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.061 3.939 12 N -0.531 5.531 13 C 0.137 3.863 14 C -0.006 4.006 15 C -0.039 4.039 16 N -0.294 5.294 17 C 0.160 3.840 18 C -0.116 4.116 19 C -0.080 4.080 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.097 4.097 24 N -0.081 5.081 25 N -0.259 5.259 26 C 0.062 3.938 27 C -0.102 4.102 28 H 0.259 0.741 29 H 0.021 0.979 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.189 0.811 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.090 0.910 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 -20.787 -15.347 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.257 5.257 13 C 0.007 3.993 14 C -0.143 4.143 15 C -0.190 4.190 16 N -0.088 5.088 17 C 0.039 3.961 18 C -0.117 4.117 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.116 4.116 24 N -0.060 5.060 25 N -0.126 5.126 26 C -0.065 4.065 27 C -0.141 4.141 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.206 0.794 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.108 0.892 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.374 -20.078 -15.515 26.720 hybrid contribution 0.936 0.398 0.273 1.053 sum -7.438 -19.680 -15.242 25.980 Atomic orbital electron populations 1.69895 1.05832 1.26208 1.51029 1.24985 0.94818 0.98961 0.95353 0.86654 0.79872 0.83815 0.77975 1.20823 1.21365 1.20012 1.21207 0.92811 0.90711 1.50052 0.92797 1.18690 0.92692 0.91692 0.94055 1.21667 0.98655 0.93748 1.00225 1.22128 0.95739 0.99329 0.89509 1.62219 1.23565 1.01528 1.38412 1.20333 0.92170 0.93582 0.93210 1.21825 0.93811 1.03888 0.94822 1.23317 0.92166 1.09553 0.93915 1.47342 1.08722 1.42608 1.10101 1.20887 0.98046 1.01038 0.76100 1.19684 0.94259 0.93884 1.03871 1.21128 0.91661 1.00473 0.96623 1.21202 0.98988 0.93641 1.00198 1.21266 0.97327 0.95383 0.98601 1.21135 0.92617 0.99861 1.00724 1.21056 0.99279 0.92593 0.98676 1.78280 1.17999 1.16379 0.93354 1.75159 1.06901 1.16743 1.13832 1.22263 0.92687 0.92280 0.99285 1.21649 1.00023 0.93327 0.99076 0.93145 0.96133 0.93146 0.92545 0.95573 0.92341 0.93607 0.89715 0.79426 0.86863 0.87495 0.85388 0.85595 0.85852 0.85791 0.85935 0.92519 0.95699 0.89153 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 11.37 55.43 0.63 -25.74 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.40 8.56 -34.44 -0.29 -14.69 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 11 C 0.06 1.11 5.42 -3.83 -0.02 1.09 16 12 N -0.53 -9.89 4.80 -236.12 -1.13 -11.03 16 13 C 0.14 2.09 5.84 -4.98 -0.03 2.06 16 14 C -0.01 -0.09 5.17 -82.78 -0.43 -0.52 16 15 C -0.04 -0.48 11.50 -17.04 -0.20 -0.67 16 16 N -0.29 -3.59 3.43 -62.44 -0.21 -3.80 16 17 C 0.16 1.25 6.58 -5.19 -0.03 1.21 16 18 C -0.12 -0.98 5.25 -104.62 -0.55 -1.53 16 19 C -0.08 -0.70 9.70 -39.58 -0.38 -1.09 16 20 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 21 C -0.11 -0.78 10.05 -39.58 -0.40 -1.18 16 22 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.10 -0.75 9.70 -39.58 -0.38 -1.13 16 24 N -0.08 -1.30 12.93 60.35 0.78 -0.52 16 25 N -0.26 -4.68 11.18 33.29 0.37 -4.30 16 26 C 0.06 1.36 4.90 -3.84 -0.02 1.34 16 27 C -0.10 -2.58 5.12 -26.65 -0.14 -2.72 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.19 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.11 0.52 8.01 -51.93 -0.42 0.10 16 38 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.06 1.25 5.80 -51.93 -0.30 0.95 16 45 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.09 2.55 6.18 -51.93 -0.32 2.23 16 47 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -33.88 380.94 -10.29 -44.16 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.34 Total: -1.06 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -4.10 Total: -20.27 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.44 Total: -45.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.88 -10.29 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775661284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.834 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds