Wall clock time and date at job start Tue Mar 31 2020 14:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48507 * 109.47307 * 270.00274 * 3 2 1 5 5 H 1.48509 * 109.47068 * 30.00012 * 3 2 1 6 6 H 1.48497 * 109.47245 * 149.99904 * 3 2 1 7 7 C 1.37876 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.53118 * 109.52057 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.28164 * 182.37613 * 10 9 7 12 12 N 1.46843 * 109.52188 * 59.17666 * 11 10 9 13 13 C 1.46898 * 111.00092 * 174.16185 * 12 11 10 14 14 C 1.50698 * 109.47133 * 170.00120 * 13 12 11 15 15 C 1.35352 * 126.75155 * 95.00062 * 14 13 12 16 16 N 1.35316 * 106.17548 * 179.97438 * 15 14 13 17 17 C 1.46503 * 125.86558 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46722 * 124.99902 * 17 16 15 19 19 C 1.38238 * 119.99727 * 90.00230 * 18 17 16 20 20 C 1.38234 * 119.99693 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 C 1.38234 * 120.00207 * 270.01721 * 18 17 16 24 24 N 1.28713 * 108.26381 * 0.26491 * 16 15 14 25 25 N 1.28634 * 110.17641 * 359.55736 * 24 16 15 26 26 C 1.46844 * 111.20141 * 298.26498 * 12 11 10 27 27 C 1.53033 * 109.52677 * 61.73738 * 26 12 11 28 28 H 0.96993 * 120.00082 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.52439 * 300.12858 * 9 7 2 30 30 H 1.09004 * 109.50671 * 62.43584 * 10 9 7 31 31 H 1.09001 * 109.53763 * 302.33527 * 10 9 7 32 32 H 1.09000 * 109.45904 * 299.16462 * 11 10 9 33 33 H 1.09000 * 109.45928 * 179.19159 * 11 10 9 34 34 H 1.09002 * 109.47060 * 50.00621 * 13 12 11 35 35 H 1.08998 * 109.47371 * 290.00219 * 13 12 11 36 36 H 1.08004 * 126.91277 * 0.02562 * 15 14 13 37 37 H 1.09000 * 109.47286 * 5.00381 * 17 16 15 38 38 H 1.08993 * 109.47262 * 244.99719 * 17 16 15 39 39 H 1.07997 * 119.99846 * 359.97438 * 19 18 17 40 40 H 1.07999 * 119.99751 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 43 43 H 1.07999 * 120.00008 * 0.02562 * 23 18 17 44 44 H 1.08998 * 109.46649 * 181.75895 * 26 12 11 45 45 H 1.09007 * 109.45847 * 301.72493 * 26 12 11 46 46 H 1.09005 * 109.50289 * 180.88458 * 27 26 12 47 47 H 1.08999 * 109.53789 * 60.78752 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4754 -4.9851 -0.0604 12 7 0.6535 -5.0195 -1.2768 13 6 0.0072 -6.3287 -1.4387 14 6 -1.0107 -6.2528 -2.5473 15 6 -0.8216 -6.5887 -3.8448 16 7 -2.0003 -6.3602 -4.4689 17 6 -2.2755 -6.5807 -5.8909 18 6 -3.4702 -7.4877 -6.0366 19 6 -4.7413 -6.9497 -6.1114 20 6 -5.8372 -7.7817 -6.2444 21 6 -5.6619 -9.1516 -6.3032 22 6 -4.3912 -9.6899 -6.2235 23 6 -3.2949 -8.8577 -6.0951 24 7 -2.8367 -5.9112 -3.5997 25 7 -2.2791 -5.8408 -2.4426 26 6 -0.3402 -3.9384 -1.2771 27 6 0.3754 -2.5859 -1.2535 28 1 -0.4850 0.8400 0.0004 29 1 0.6228 -2.5569 0.8882 30 1 2.8431 -3.6320 0.9103 31 1 2.8997 -3.5844 -0.8685 32 1 0.8318 -5.0705 0.8152 33 1 2.1807 -5.8160 -0.0751 34 1 -0.4887 -6.6066 -0.5086 35 1 0.7597 -7.0772 -1.6870 36 1 0.0870 -6.9643 -4.2918 37 1 -1.4081 -7.0440 -6.3613 38 1 -2.4835 -5.6256 -6.3731 39 1 -4.8783 -5.8795 -6.0650 40 1 -6.8304 -7.3614 -6.3025 41 1 -6.5182 -9.8016 -6.4068 42 1 -4.2546 -10.7604 -6.2650 43 1 -2.3018 -9.2780 -6.0360 44 1 -0.9537 -4.0091 -2.1753 45 1 -0.9753 -4.0287 -0.3957 46 1 -0.3627 -1.7839 -1.2378 47 1 0.9999 -2.4884 -2.1415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775661284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:13 Heat of formation + Delta-G solvation = 106.800448 kcal Electronic energy + Delta-G solvation = -26889.132306 eV Core-core repulsion = 23265.940552 eV Total energy + Delta-G solvation = -3623.191754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.21384 -40.21931 -39.75111 -36.38920 -35.58926 -33.70668 -32.40010 -31.90573 -31.76297 -31.40812 -28.43081 -27.89797 -26.20514 -23.92074 -23.61093 -23.41783 -23.32487 -22.29139 -21.38870 -20.29929 -18.46519 -18.31843 -17.90189 -17.31052 -16.77637 -16.31336 -16.21183 -15.88559 -15.87566 -15.76613 -15.07394 -14.78178 -14.58847 -14.37442 -14.27237 -14.10930 -13.80161 -13.65496 -13.36970 -13.32457 -13.01498 -12.83070 -12.61148 -12.48578 -12.26127 -12.20914 -11.99003 -11.98004 -11.85026 -11.67178 -11.34670 -11.01074 -10.78616 -10.61150 -10.37356 -10.16500 -9.88393 -9.86954 -9.16535 -8.06588 -6.21245 0.16396 0.44618 0.73090 1.40696 1.41167 1.50281 1.51987 1.66061 2.44026 2.86480 3.17113 3.20930 3.34954 3.54158 3.71750 3.91942 4.06106 4.10931 4.21536 4.22824 4.27139 4.32883 4.34875 4.42613 4.52846 4.54603 4.59801 4.69329 4.72969 4.81486 4.89964 4.96693 5.00843 5.03663 5.09239 5.14246 5.19825 5.26437 5.35832 5.47162 5.53919 5.55970 5.58567 5.62780 5.72870 5.99270 6.02141 6.02230 6.25180 6.34746 6.40467 6.92102 7.46869 7.58843 8.97992 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.002371 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.789610 B =11806.851993 C =12582.740421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.043 3.957 10 C -0.098 4.098 11 C 0.065 3.935 12 N -0.529 5.529 13 C 0.140 3.860 14 C -0.038 4.038 15 C -0.015 4.015 16 N -0.283 5.283 17 C 0.151 3.849 18 C -0.127 4.127 19 C -0.102 4.102 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.103 4.103 24 N -0.113 5.113 25 N -0.309 5.309 26 C 0.085 3.915 27 C -0.092 4.092 28 H 0.258 0.742 29 H -0.018 1.018 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.104 0.896 34 H 0.037 0.963 35 H 0.129 0.871 36 H 0.236 0.764 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.053 0.947 45 H -0.002 1.002 46 H 0.051 0.949 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -23.104 -16.981 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.136 4.136 11 C -0.063 4.063 12 N -0.255 5.255 13 C 0.011 3.989 14 C -0.176 4.176 15 C -0.167 4.167 16 N -0.076 5.076 17 C 0.032 3.968 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.155 4.155 21 C -0.133 4.133 22 C -0.151 4.151 23 C -0.121 4.121 24 N -0.092 5.092 25 N -0.176 5.176 26 C -0.043 4.043 27 C -0.130 4.130 28 H 0.067 0.933 29 H 0.000 1.000 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.123 0.877 34 H 0.055 0.945 35 H 0.147 0.853 36 H 0.253 0.747 37 H 0.173 0.827 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.072 0.928 45 H 0.017 0.983 46 H 0.069 0.931 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.166 -22.409 -17.163 28.892 hybrid contribution 0.197 1.057 0.710 1.289 sum -5.969 -21.351 -16.453 27.608 Atomic orbital electron populations 1.70070 1.07432 1.26954 1.51757 1.25847 0.95643 1.02721 0.94988 0.85583 0.78785 0.79231 0.78217 1.20131 1.21169 1.18867 1.21611 0.93130 0.92053 1.49947 0.92541 1.18673 0.93205 0.93242 0.92462 1.21534 0.97782 0.93609 1.00657 1.22118 0.96057 0.98956 0.89126 1.62176 1.22656 1.02309 1.38333 1.20477 0.93147 0.92086 0.93166 1.22064 0.93332 1.05719 0.96533 1.23966 0.93130 1.06897 0.92665 1.47723 1.08268 1.40542 1.11104 1.21354 0.99694 1.01820 0.73884 1.19796 0.94148 0.94544 1.04309 1.21274 0.92621 1.00461 0.97664 1.21435 0.99361 0.94250 1.00435 1.21577 0.98366 0.95323 0.98011 1.21489 0.92491 1.01078 1.00054 1.21364 1.00516 0.92231 0.98028 1.78202 1.19220 1.18123 0.93673 1.75093 1.08698 1.18450 1.15341 1.21831 0.92567 0.92004 0.97901 1.21402 0.98917 0.94346 0.98362 0.93273 1.00002 0.92376 0.92378 0.96473 0.87748 0.94459 0.85298 0.74733 0.82696 0.86921 0.86105 0.84667 0.83966 0.83703 0.83778 0.92829 0.98340 0.93073 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.74 11.37 21.45 0.24 -56.50 16 2 C 0.01 0.34 5.31 84.65 0.45 0.79 16 3 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -30.47 8.56 25.60 0.22 -30.25 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.04 2.28 2.16 -11.46 -0.02 2.26 16 10 C -0.10 -4.13 5.32 30.65 0.16 -3.97 16 11 C 0.06 2.25 5.42 86.33 0.47 2.72 16 12 N -0.53 -18.89 4.80 -900.95 -4.32 -23.21 16 13 C 0.14 3.93 5.84 85.56 0.50 4.43 16 14 C -0.04 -1.12 5.17 41.60 0.22 -0.91 16 15 C -0.01 -0.31 11.50 83.49 0.96 0.65 16 16 N -0.28 -6.38 3.43 -351.45 -1.20 -7.58 16 17 C 0.15 2.00 6.58 85.63 0.56 2.56 16 18 C -0.13 -1.97 5.25 -19.86 -0.10 -2.07 16 19 C -0.10 -1.79 9.70 22.27 0.22 -1.58 16 20 C -0.14 -2.14 10.05 22.27 0.22 -1.92 16 21 C -0.11 -1.53 10.05 22.27 0.22 -1.30 16 22 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 23 C -0.10 -1.33 9.70 22.27 0.22 -1.11 16 24 N -0.11 -3.67 12.93 37.02 0.48 -3.19 16 25 N -0.31 -11.33 11.18 -48.60 -0.54 -11.88 16 26 C 0.09 3.83 4.90 86.33 0.42 4.25 16 27 C -0.09 -4.82 5.12 30.64 0.16 -4.66 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H -0.02 -1.10 8.14 -2.39 -0.02 -1.11 16 30 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 2.75 8.12 -2.39 -0.02 2.73 16 34 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.24 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.16 0.72 8.01 -2.39 -0.02 0.70 16 38 H 0.11 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.05 2.44 5.80 -2.39 -0.01 2.43 16 45 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 46 H 0.05 3.06 6.18 -2.38 -0.01 3.05 16 47 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.52 380.94 2.72 -75.80 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.95 Total: 10.74 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 5.09 Total: -31.56 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -5.35 Total: -102.36 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.52 2.72 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775661284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.602 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds