Wall clock time and date at job start Tue Mar 31 2020 15:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47463 * 2 1 4 4 H 1.09004 * 109.47281 * 305.00677 * 3 2 1 5 5 C 1.52998 * 109.47152 * 185.00077 * 3 2 1 6 6 N 1.46507 * 109.46569 * 65.00401 * 3 2 1 7 7 N 1.40100 * 119.99459 * 210.00015 * 6 3 2 8 8 C 1.29711 * 119.99845 * 180.02562 * 7 6 3 9 9 C 1.47531 * 120.00084 * 179.97438 * 8 7 6 10 10 C 1.36681 * 126.67206 * 185.17494 * 9 8 7 11 11 N 1.34749 * 108.04760 * 179.97438 * 10 9 8 12 12 C 1.46495 * 125.27031 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47195 * 125.00313 * 12 11 10 14 14 H 1.08002 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99719 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47178 * 89.99429 * 17 15 13 19 19 H 1.48494 * 109.47050 * 209.99486 * 17 15 13 20 20 H 1.48500 * 109.46917 * 329.99631 * 17 15 13 21 21 N 1.39828 * 109.45879 * 359.75561 * 11 10 9 22 22 C 1.31559 * 108.80728 * 0.42383 * 21 11 10 23 23 C 1.48266 * 126.48537 * 179.85126 * 22 21 11 24 24 C 1.39390 * 120.12829 * 224.09102 * 23 22 21 25 25 C 1.38004 * 119.87319 * 179.97438 * 24 23 22 26 26 C 1.38329 * 120.12386 * 359.97438 * 25 24 23 27 27 C 1.38326 * 120.25805 * 0.02562 * 26 25 24 28 28 C 1.38001 * 120.12939 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47471 * 59.99338 * 1 2 3 30 30 H 1.09004 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46841 * 299.99541 * 1 2 3 32 32 H 1.09001 * 109.46456 * 240.00080 * 2 1 3 33 33 H 1.09000 * 109.47061 * 120.00994 * 2 1 3 34 34 H 1.08996 * 109.47607 * 300.00707 * 5 3 2 35 35 H 1.09000 * 109.46843 * 60.00842 * 5 3 2 36 36 H 1.09004 * 109.47131 * 179.97438 * 5 3 2 37 37 H 0.97000 * 120.00275 * 30.00171 * 6 3 2 38 38 H 1.08006 * 119.99607 * 359.97438 * 8 7 6 39 39 H 1.07999 * 125.98072 * 359.93520 * 10 9 8 40 40 H 1.09004 * 109.47175 * 245.00361 * 12 11 10 41 41 H 1.09005 * 109.47449 * 5.00187 * 12 11 10 42 42 H 0.97005 * 119.99594 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.06550 * 359.95648 * 24 23 22 44 44 H 1.07999 * 119.94152 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.87135 * 179.75078 * 26 25 24 46 46 H 1.08005 * 119.93845 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.06939 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6526 2.0973 1.2519 7 7 1.4187 3.4785 1.2767 8 6 1.0761 4.0584 2.3852 9 6 0.8304 5.5129 2.4115 10 6 0.5617 6.2756 3.5134 11 7 0.4016 7.5511 3.1093 12 6 0.0997 8.6848 3.9866 13 6 1.1352 9.7618 3.7901 14 1 1.9378 9.6165 3.0821 15 6 1.0575 10.9331 4.5133 16 7 1.9615 11.8728 4.3421 17 14 -0.3310 11.1847 5.7373 18 1 0.0867 10.6807 7.0702 19 1 -0.6503 12.6318 5.8330 20 1 -1.5333 10.4416 5.2816 21 7 0.5734 7.6258 1.7237 22 6 0.8274 6.4202 1.2622 23 6 1.0709 6.0512 -0.1530 24 6 0.4670 4.9174 -0.6942 25 6 0.6969 4.5791 -2.0123 26 6 1.5243 5.3630 -2.7961 27 6 2.1262 6.4893 -2.2644 28 6 1.9037 6.8374 -0.9477 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.9995 0.9051 0.7159 35 1 3.8531 0.9570 -1.0572 36 1 3.9283 2.4719 -0.1262 37 1 1.5579 1.5747 2.0636 38 1 0.9707 3.4765 3.2889 39 1 0.4895 5.9184 4.5301 40 1 -0.8865 9.0801 3.7431 41 1 0.1121 8.3540 5.0252 42 1 1.9070 12.6967 4.8511 43 1 -0.1792 4.3047 -0.0832 44 1 0.2293 3.7011 -2.4329 45 1 1.7046 5.0922 -3.8260 46 1 2.7716 7.0974 -2.8810 47 1 2.3738 7.7171 -0.5337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790191745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:19 Heat of formation + Delta-G solvation = 135.234535 kcal Electronic energy + Delta-G solvation = -27033.283677 eV Core-core repulsion = 23411.324917 eV Total energy + Delta-G solvation = -3621.958759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33009 -38.47526 -37.59208 -35.17359 -33.68977 -32.26555 -31.18788 -30.54045 -30.39057 -29.76929 -28.30242 -26.86689 -23.88263 -23.44377 -22.57590 -22.18392 -21.17597 -20.86754 -19.75220 -19.00254 -17.09227 -16.88713 -16.42281 -15.99011 -15.41415 -14.94024 -14.68732 -14.39689 -14.29264 -14.14350 -13.82950 -13.58661 -13.40518 -13.21775 -13.06030 -12.64991 -12.57012 -12.51442 -12.24674 -12.18811 -11.92158 -11.81065 -11.33197 -11.20203 -11.05321 -10.91761 -10.84725 -10.82101 -10.68737 -10.37496 -10.10699 -9.75878 -9.54654 -9.03116 -8.79689 -8.64074 -8.49056 -7.97384 -6.97184 -6.25550 -4.28475 1.48153 1.79819 2.04376 2.87370 3.03556 3.13047 3.20072 3.21164 3.39304 3.68856 4.20592 4.25444 4.56291 4.83010 4.86569 4.89954 5.01461 5.14810 5.22960 5.29006 5.30462 5.32857 5.40457 5.43476 5.48073 5.58924 5.68663 5.70741 5.74214 5.82409 5.84130 5.96260 6.00713 6.09995 6.15961 6.21152 6.26126 6.34047 6.45017 6.57707 6.69913 6.77708 6.82633 7.01476 7.13621 7.29205 7.34882 7.38458 7.66081 8.28070 8.44259 8.76060 8.84035 9.28727 10.87057 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.003067 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.240802 B = 9126.611231 C =10234.786725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.186 3.814 4 H 0.081 0.919 5 C -0.167 4.167 6 N -0.665 5.665 7 N -0.231 5.231 8 C 0.113 3.887 9 C -0.207 4.207 10 C 0.078 3.922 11 N -0.323 5.323 12 C 0.228 3.772 13 C -0.536 4.536 14 H 0.086 0.914 15 C 0.077 3.923 16 N -0.886 5.886 17 Si 0.872 3.128 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 N -0.252 5.252 22 C 0.106 3.894 23 C 0.009 3.991 24 C -0.052 4.052 25 C -0.133 4.133 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.093 4.093 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.366 0.634 38 H 0.101 0.899 39 H 0.173 0.827 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.269 0.731 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -22.537 -8.225 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.080 3.920 4 H 0.099 0.901 5 C -0.226 4.226 6 N -0.402 5.402 7 N -0.038 5.038 8 C -0.099 4.099 9 C -0.222 4.222 10 C -0.074 4.074 11 N -0.101 5.101 12 C 0.110 3.890 13 C -0.574 4.574 14 H 0.104 0.896 15 C -0.127 4.127 16 N -0.523 5.523 17 Si 0.698 3.302 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.188 1.188 21 N -0.073 5.073 22 C -0.062 4.062 23 C 0.007 3.993 24 C -0.072 4.072 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.112 4.112 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.203 0.797 38 H 0.118 0.882 39 H 0.191 0.809 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.224 -20.896 -9.463 23.046 hybrid contribution -0.514 -1.004 2.354 2.610 sum -2.738 -21.900 -7.109 23.187 Atomic orbital electron populations 1.21726 0.95408 1.01115 1.02375 1.21857 0.96554 0.96228 1.02423 1.20518 0.93389 0.91250 0.86842 0.90083 1.22320 0.96857 1.02447 1.01019 1.48015 1.80656 1.01634 1.09933 1.74431 1.10838 0.93715 1.24807 1.22947 1.00944 0.92370 0.93640 1.19072 1.20146 0.91328 0.91638 1.22400 1.00592 0.85360 0.99027 1.48756 1.49773 1.06697 1.04921 1.20104 0.98522 0.83177 0.87243 1.21081 1.11409 0.99301 1.25624 0.89556 1.24823 0.95899 0.95357 0.96583 1.69871 1.34340 1.07063 1.41002 0.86918 0.82831 0.78508 0.81918 1.19718 1.20500 1.18843 1.77559 1.20489 1.19275 0.89966 1.21861 1.01439 0.90136 0.92745 1.17638 0.97626 0.95285 0.88753 1.20944 0.97678 0.94475 0.94073 1.20870 1.00153 0.99953 0.94151 1.21064 0.97954 0.95606 0.99302 1.20951 1.00981 0.97712 0.95255 1.21278 0.97331 0.98960 0.93620 0.92628 0.93101 0.92525 0.90727 0.91932 0.93125 0.92412 0.92081 0.79669 0.88154 0.80946 0.93806 0.93354 0.92129 0.86155 0.86814 0.86830 0.86421 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.80 37.16 0.36 -0.73 16 2 C -0.13 -0.93 5.50 -26.73 -0.15 -1.08 16 3 C 0.19 1.75 3.25 -67.93 -0.22 1.53 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.17 -1.58 9.52 37.16 0.35 -1.23 16 6 N -0.66 -7.27 5.56 -4.89 -0.03 -7.30 16 7 N -0.23 -3.21 7.52 32.17 0.24 -2.97 16 8 C 0.11 1.60 10.88 -14.66 -0.16 1.44 16 9 C -0.21 -3.58 6.23 -103.38 -0.64 -4.22 16 10 C 0.08 1.36 11.35 -16.83 -0.19 1.17 16 11 N -0.32 -6.96 3.64 -62.24 -0.23 -7.19 16 12 C 0.23 5.22 5.29 -5.20 -0.03 5.19 16 13 C -0.54 -14.84 9.76 -34.44 -0.34 -15.17 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 17 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 21 N -0.25 -5.73 12.33 34.56 0.43 -5.31 16 22 C 0.11 2.09 6.86 -80.56 -0.55 1.54 16 23 C 0.01 0.16 5.48 -104.91 -0.57 -0.42 16 24 C -0.05 -0.78 7.53 -39.24 -0.30 -1.08 16 25 C -0.13 -1.70 10.03 -39.63 -0.40 -2.10 16 26 C -0.12 -1.51 10.04 -39.52 -0.40 -1.90 16 27 C -0.13 -1.83 10.03 -39.64 -0.40 -2.23 16 28 C -0.09 -1.57 9.78 -39.24 -0.38 -1.95 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.37 3.50 8.61 -182.60 -1.57 1.93 16 38 H 0.10 1.15 8.02 -52.48 -0.42 0.73 16 39 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 41 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.12 1.82 6.90 -52.49 -0.36 1.45 16 44 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 47 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -31.49 395.78 -10.23 -41.72 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.61 Total: 4.71 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -4.10 Total: -19.20 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 1.19 Total: -48.31 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.49 -10.23 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790191745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.956 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds