Wall clock time and date at job start Tue Mar 31 2020 15:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47463 * 2 1 4 4 H 1.09004 * 109.47281 * 305.00677 * 3 2 1 5 5 C 1.52998 * 109.47152 * 185.00077 * 3 2 1 6 6 N 1.46507 * 109.46569 * 65.00401 * 3 2 1 7 7 N 1.40100 * 119.99459 * 210.00015 * 6 3 2 8 8 C 1.29711 * 119.99845 * 180.02562 * 7 6 3 9 9 C 1.47531 * 120.00084 * 179.97438 * 8 7 6 10 10 C 1.36681 * 126.67206 * 185.17494 * 9 8 7 11 11 N 1.34749 * 108.04760 * 179.97438 * 10 9 8 12 12 C 1.46495 * 125.27031 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47195 * 125.00313 * 12 11 10 14 14 H 1.08002 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99719 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47178 * 89.99429 * 17 15 13 19 19 H 1.48494 * 109.47050 * 209.99486 * 17 15 13 20 20 H 1.48500 * 109.46917 * 329.99631 * 17 15 13 21 21 N 1.39828 * 109.45879 * 359.75561 * 11 10 9 22 22 C 1.31559 * 108.80728 * 0.42383 * 21 11 10 23 23 C 1.48266 * 126.48537 * 179.85126 * 22 21 11 24 24 C 1.39390 * 120.12829 * 224.09102 * 23 22 21 25 25 C 1.38004 * 119.87319 * 179.97438 * 24 23 22 26 26 C 1.38329 * 120.12386 * 359.97438 * 25 24 23 27 27 C 1.38326 * 120.25805 * 0.02562 * 26 25 24 28 28 C 1.38001 * 120.12939 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47471 * 59.99338 * 1 2 3 30 30 H 1.09004 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46841 * 299.99541 * 1 2 3 32 32 H 1.09001 * 109.46456 * 240.00080 * 2 1 3 33 33 H 1.09000 * 109.47061 * 120.00994 * 2 1 3 34 34 H 1.08996 * 109.47607 * 300.00707 * 5 3 2 35 35 H 1.09000 * 109.46843 * 60.00842 * 5 3 2 36 36 H 1.09004 * 109.47131 * 179.97438 * 5 3 2 37 37 H 0.97000 * 120.00275 * 30.00171 * 6 3 2 38 38 H 1.08006 * 119.99607 * 359.97438 * 8 7 6 39 39 H 1.07999 * 125.98072 * 359.93520 * 10 9 8 40 40 H 1.09004 * 109.47175 * 245.00361 * 12 11 10 41 41 H 1.09005 * 109.47449 * 5.00187 * 12 11 10 42 42 H 0.97005 * 119.99594 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.06550 * 359.95648 * 24 23 22 44 44 H 1.07999 * 119.94152 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.87135 * 179.75078 * 26 25 24 46 46 H 1.08005 * 119.93845 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.06939 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6526 2.0973 1.2519 7 7 1.4187 3.4785 1.2767 8 6 1.0761 4.0584 2.3852 9 6 0.8304 5.5129 2.4115 10 6 0.5617 6.2756 3.5134 11 7 0.4016 7.5511 3.1093 12 6 0.0997 8.6848 3.9866 13 6 1.1352 9.7618 3.7901 14 1 1.9378 9.6165 3.0821 15 6 1.0575 10.9331 4.5133 16 7 1.9615 11.8728 4.3421 17 14 -0.3310 11.1847 5.7373 18 1 0.0867 10.6807 7.0702 19 1 -0.6503 12.6318 5.8330 20 1 -1.5333 10.4416 5.2816 21 7 0.5734 7.6258 1.7237 22 6 0.8274 6.4202 1.2622 23 6 1.0709 6.0512 -0.1530 24 6 0.4670 4.9174 -0.6942 25 6 0.6969 4.5791 -2.0123 26 6 1.5243 5.3630 -2.7961 27 6 2.1262 6.4893 -2.2644 28 6 1.9037 6.8374 -0.9477 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.9995 0.9051 0.7159 35 1 3.8531 0.9570 -1.0572 36 1 3.9283 2.4719 -0.1262 37 1 1.5579 1.5747 2.0636 38 1 0.9707 3.4765 3.2889 39 1 0.4895 5.9184 4.5301 40 1 -0.8865 9.0801 3.7431 41 1 0.1121 8.3540 5.0252 42 1 1.9070 12.6967 4.8511 43 1 -0.1792 4.3047 -0.0832 44 1 0.2293 3.7011 -2.4329 45 1 1.7046 5.0922 -3.8260 46 1 2.7716 7.0974 -2.8810 47 1 2.3738 7.7171 -0.5337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790191745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:18 Heat of formation + Delta-G solvation = 117.149130 kcal Electronic energy + Delta-G solvation = -27034.067919 eV Core-core repulsion = 23411.324917 eV Total energy + Delta-G solvation = -3622.743001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76561 -39.65745 -38.44830 -36.20715 -35.43985 -33.94999 -32.26582 -31.79043 -31.59529 -30.82588 -29.59016 -28.32369 -25.05970 -24.62798 -23.79266 -23.36011 -22.54416 -21.65522 -21.05886 -20.33362 -19.08086 -18.16384 -17.47881 -17.19878 -16.52725 -16.36724 -16.11056 -15.71813 -15.36279 -15.14611 -14.96708 -14.69728 -14.58243 -14.27563 -14.26176 -14.16623 -13.82040 -13.78900 -13.49669 -13.36376 -12.93535 -12.80183 -12.56975 -12.49465 -12.12695 -12.08698 -12.01775 -11.91494 -11.82043 -11.75786 -11.54688 -11.40870 -10.88323 -10.75931 -10.45387 -9.88588 -9.65704 -9.23562 -8.38407 -8.12339 -6.48855 0.27331 0.63252 0.81066 1.34971 1.38565 1.48063 1.49481 1.79624 2.21995 2.28409 2.46689 2.94303 3.06145 3.60370 3.82281 3.91497 4.15013 4.20184 4.23705 4.24775 4.30117 4.31579 4.37965 4.53781 4.59367 4.66482 4.68846 4.75556 4.77274 4.84671 4.90776 4.98556 5.02669 5.05916 5.11689 5.17697 5.21525 5.27861 5.29559 5.39295 5.48758 5.52392 5.68223 5.70233 5.79993 5.88089 5.96826 6.19981 6.37986 6.54024 6.56966 6.96550 7.14048 7.79210 8.79241 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.003067 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.240802 B = 9126.611231 C =10234.786725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.183 3.817 4 H 0.071 0.929 5 C -0.163 4.163 6 N -0.656 5.656 7 N -0.239 5.239 8 C 0.098 3.902 9 C -0.206 4.206 10 C 0.080 3.920 11 N -0.350 5.350 12 C 0.237 3.763 13 C -0.548 4.548 14 H 0.023 0.977 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.957 3.043 18 H -0.250 1.250 19 H -0.282 1.282 20 H -0.239 1.239 21 N -0.317 5.317 22 C 0.099 3.901 23 C -0.019 4.019 24 C -0.051 4.051 25 C -0.124 4.124 26 C -0.109 4.109 27 C -0.132 4.132 28 C -0.121 4.121 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.376 0.624 38 H 0.134 0.866 39 H 0.219 0.781 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.137 0.863 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -26.535 -8.232 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.078 3.922 4 H 0.089 0.911 5 C -0.222 4.222 6 N -0.394 5.394 7 N -0.047 5.047 8 C -0.114 4.114 9 C -0.221 4.221 10 C -0.070 4.070 11 N -0.129 5.129 12 C 0.117 3.883 13 C -0.586 4.586 14 H 0.041 0.959 15 C -0.186 4.186 16 N -0.583 5.583 17 Si 0.778 3.222 18 H -0.174 1.174 19 H -0.208 1.208 20 H -0.162 1.162 21 N -0.138 5.138 22 C -0.069 4.069 23 C -0.021 4.021 24 C -0.071 4.071 25 C -0.142 4.142 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.141 4.141 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.214 0.786 38 H 0.151 0.849 39 H 0.236 0.764 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.155 0.845 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.849 -24.948 -9.483 26.965 hybrid contribution 0.147 0.069 2.107 2.114 sum -3.702 -24.878 -7.376 26.211 Atomic orbital electron populations 1.21710 0.95540 1.01661 1.01584 1.21798 0.96267 0.94385 1.03658 1.20682 0.93307 0.92497 0.85760 0.91070 1.22272 0.96820 1.00762 1.02319 1.48114 1.79767 1.00448 1.11091 1.74326 1.09449 0.95546 1.25370 1.22870 1.02480 0.90940 0.95080 1.19466 1.19010 0.92941 0.90642 1.23146 0.99140 0.83641 1.01082 1.48592 1.52130 1.07699 1.04522 1.19893 0.96457 0.82658 0.89260 1.21231 1.11279 1.01709 1.24355 0.95897 1.25960 0.99169 0.94432 0.99000 1.70064 1.37243 1.08011 1.42937 0.85591 0.79113 0.78446 0.79066 1.17409 1.20784 1.16178 1.77455 1.23406 1.21625 0.91313 1.22459 0.99933 0.89991 0.94518 1.17816 0.99240 0.96816 0.88200 1.20951 0.97458 0.93470 0.95195 1.21267 0.99324 1.00645 0.92985 1.21491 0.96221 0.94077 1.00930 1.21210 1.01156 0.98652 0.93970 1.21223 0.98777 0.98698 0.95398 0.92989 0.91916 0.93743 0.89031 0.91118 0.92671 0.90462 0.95090 0.78566 0.84933 0.76407 0.93822 0.89712 0.91893 0.86295 0.83368 0.82888 0.84475 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.80 71.98 0.71 -1.02 16 2 C -0.12 -1.31 5.50 30.59 0.17 -1.14 16 3 C 0.18 2.98 3.25 44.99 0.15 3.12 16 4 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 5 C -0.16 -2.74 9.52 71.98 0.69 -2.06 16 6 N -0.66 -12.95 5.56 -169.38 -0.94 -13.90 16 7 N -0.24 -6.39 7.52 -52.15 -0.39 -6.79 16 8 C 0.10 2.67 10.88 87.46 0.95 3.62 16 9 C -0.21 -7.23 6.23 -19.06 -0.12 -7.35 16 10 C 0.08 2.76 11.35 83.88 0.95 3.71 16 11 N -0.35 -15.66 3.64 -350.81 -1.28 -16.94 16 12 C 0.24 10.99 5.29 85.63 0.45 11.44 16 13 C -0.55 -32.11 9.76 25.60 0.25 -31.86 16 14 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 15 C 0.01 0.75 5.47 84.65 0.46 1.21 16 16 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 17 Si 0.96 40.94 27.47 68.60 1.88 42.83 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 21 N -0.32 -15.56 12.33 -44.57 -0.55 -16.11 16 22 C 0.10 4.15 6.86 43.99 0.30 4.45 16 23 C -0.02 -0.69 5.48 -20.05 -0.11 -0.80 16 24 C -0.05 -1.51 7.53 22.49 0.17 -1.35 16 25 C -0.12 -2.87 10.03 22.24 0.22 -2.65 16 26 C -0.11 -2.43 10.04 22.31 0.22 -2.21 16 27 C -0.13 -3.67 10.03 22.23 0.22 -3.44 16 28 C -0.12 -4.42 9.78 22.49 0.22 -4.20 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.63 7.75 -2.39 -0.02 0.61 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.38 6.20 8.61 -213.32 -1.84 4.36 16 38 H 0.13 2.67 8.02 -2.91 -0.02 2.65 16 39 H 0.22 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.04 2.00 7.20 -2.38 -0.02 1.98 16 41 H 0.09 3.29 7.48 -2.38 -0.02 3.27 16 42 H 0.27 15.67 8.31 -92.70 -0.77 14.89 16 43 H 0.12 3.52 6.90 -2.91 -0.02 3.50 16 44 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 47 H 0.09 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -77.40 395.78 3.99 -73.41 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.94 Total: 26.81 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 5.91 Total: -30.52 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -2.86 Total: -112.53 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.83 kcal Total: -77.40 3.99 -73.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790191745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.560 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds