Wall clock time and date at job start Tue Mar 31 2020 15:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.08991 * 109.47312 * 54.99592 * 3 2 1 5 5 C 1.52998 * 109.47163 * 174.99980 * 3 2 1 6 6 N 1.46509 * 109.46586 * 294.99781 * 3 2 1 7 7 N 1.40101 * 119.99657 * 150.00103 * 6 3 2 8 8 C 1.29706 * 120.00122 * 179.97438 * 7 6 3 9 9 C 1.47539 * 119.99985 * 180.02562 * 8 7 6 10 10 C 1.36675 * 126.66997 * 185.55911 * 9 8 7 11 11 N 1.34743 * 108.04523 * 179.83556 * 10 9 8 12 12 C 1.46510 * 125.27135 * 180.12946 * 11 10 9 13 13 C 1.50700 * 109.46885 * 125.33108 * 12 11 10 14 14 H 1.08005 * 120.00212 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00553 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99920 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47324 * 89.99819 * 17 15 13 19 19 H 1.48498 * 109.47385 * 209.99854 * 17 15 13 20 20 H 1.48504 * 109.47417 * 330.00019 * 17 15 13 21 21 N 1.39829 * 109.46374 * 0.44212 * 11 10 9 22 22 C 1.31555 * 108.80311 * 359.72448 * 21 11 10 23 23 C 1.48268 * 126.48557 * 180.02562 * 22 21 11 24 24 C 1.39395 * 120.12149 * 44.62594 * 23 22 21 25 25 C 1.38009 * 119.86813 * 179.76946 * 24 23 22 26 26 C 1.38329 * 120.12646 * 0.50991 * 25 24 23 27 27 C 1.38334 * 120.25620 * 359.73819 * 26 25 24 28 28 C 1.38007 * 120.12675 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47268 * 300.00312 * 1 2 3 31 31 H 1.09005 * 109.47039 * 59.99928 * 1 2 3 32 32 H 1.09003 * 109.47268 * 239.99688 * 2 1 3 33 33 H 1.08996 * 109.46918 * 119.99915 * 2 1 3 34 34 H 1.09001 * 109.47233 * 59.99620 * 5 3 2 35 35 H 1.08996 * 109.47265 * 299.99952 * 5 3 2 36 36 H 1.08996 * 109.47345 * 179.97438 * 5 3 2 37 37 H 0.96993 * 120.00233 * 329.99933 * 6 3 2 38 38 H 1.07998 * 119.99764 * 0.02562 * 8 7 6 39 39 H 1.08000 * 125.97947 * 0.02562 * 10 9 8 40 40 H 1.08994 * 109.47084 * 245.33457 * 12 11 10 41 41 H 1.09001 * 109.46566 * 5.33386 * 12 11 10 42 42 H 0.96996 * 120.00895 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.06803 * 0.02562 * 24 23 22 44 44 H 1.07996 * 119.93712 * 180.27875 * 25 24 23 45 45 H 1.07999 * 119.87710 * 179.77154 * 26 25 24 46 46 H 1.07999 * 119.93517 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.06456 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0974 -1.2520 7 7 1.4185 3.4785 -1.2767 8 6 1.0759 4.0585 -2.3852 9 6 0.8301 5.5130 -2.4114 10 6 0.3639 6.2431 -3.4685 11 7 0.2774 7.5307 -3.0808 12 6 -0.1835 8.6383 -3.9217 13 6 -1.3109 9.3595 -3.2289 14 1 -1.6499 9.0264 -2.2590 15 6 -1.9096 10.4445 -3.8331 16 7 -2.8938 11.0737 -3.2289 17 14 -1.3239 11.0202 -5.5109 18 1 -2.0930 10.3200 -6.5709 19 1 -1.5340 12.4852 -5.6328 20 1 0.1211 10.7130 -5.6631 21 7 0.7024 7.6472 -1.7538 22 6 1.0443 6.4562 -1.3119 23 6 1.5502 6.1303 0.0432 24 6 0.9342 6.6739 1.1693 25 6 1.4064 6.3633 2.4283 26 6 2.4954 5.5227 2.5736 27 6 3.1138 4.9844 1.4594 28 6 2.6473 5.2841 0.1956 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9995 0.9052 -0.7160 35 1 3.8532 0.9570 1.0571 36 1 3.9282 2.4719 0.1253 37 1 1.5578 1.5748 -2.0636 38 1 0.9705 3.4766 -3.2889 39 1 0.1067 5.8554 -4.4432 40 1 0.6400 9.3313 -4.0933 41 1 -0.5347 8.2476 -4.8768 42 1 -3.3148 11.8372 -3.6538 43 1 0.0865 7.3336 1.0570 44 1 0.9272 6.7802 3.3017 45 1 2.8638 5.2853 3.5606 46 1 3.9634 4.3284 1.5788 47 1 3.1307 4.8630 -0.6735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790191751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:22 Heat of formation + Delta-G solvation = 134.964872 kcal Electronic energy + Delta-G solvation = -27034.878318 eV Core-core repulsion = 23412.907866 eV Total energy + Delta-G solvation = -3621.970453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32974 -38.47673 -37.58805 -35.16782 -33.68821 -32.26556 -31.15907 -30.60564 -30.38370 -29.73682 -28.30570 -26.87507 -23.87768 -23.43588 -22.57778 -22.18111 -21.16708 -20.85748 -19.76620 -18.99800 -17.09675 -16.89515 -16.44495 -15.94412 -15.43719 -14.92442 -14.70342 -14.38864 -14.25861 -14.17370 -13.82842 -13.58744 -13.38653 -13.19801 -13.11886 -12.64606 -12.58080 -12.51264 -12.24190 -12.08599 -11.94399 -11.86350 -11.34956 -11.14856 -11.04248 -10.90883 -10.83941 -10.82227 -10.69684 -10.36842 -10.11703 -9.76040 -9.54400 -9.03082 -8.79745 -8.62670 -8.50131 -7.98128 -6.97240 -6.25470 -4.28457 1.48565 1.79808 2.04581 2.87229 3.03663 3.13051 3.20070 3.21204 3.39266 3.68867 4.20602 4.25285 4.57027 4.84128 4.87549 4.91281 5.01517 5.14882 5.22716 5.28688 5.30538 5.32318 5.40458 5.44056 5.47745 5.58858 5.68925 5.73463 5.74139 5.80702 5.85191 5.95747 6.04255 6.09489 6.15559 6.19523 6.26206 6.34336 6.44957 6.57547 6.70037 6.77864 6.82645 7.01442 7.13670 7.29241 7.34836 7.38509 7.66074 8.28130 8.44269 8.76333 8.84024 9.28763 10.87133 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.003084 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.627822 B = 9076.634529 C =10150.855276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.186 3.814 4 H 0.080 0.920 5 C -0.168 4.168 6 N -0.665 5.665 7 N -0.231 5.231 8 C 0.113 3.887 9 C -0.207 4.207 10 C 0.078 3.922 11 N -0.323 5.323 12 C 0.228 3.772 13 C -0.536 4.536 14 H 0.086 0.914 15 C 0.078 3.922 16 N -0.886 5.886 17 Si 0.872 3.128 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 N -0.252 5.252 22 C 0.106 3.894 23 C 0.010 3.990 24 C -0.093 4.093 25 C -0.131 4.131 26 C -0.121 4.121 27 C -0.132 4.132 28 C -0.053 4.053 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.366 0.634 38 H 0.101 0.899 39 H 0.173 0.827 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.269 0.731 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -20.272 5.086 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.080 3.920 4 H 0.098 0.902 5 C -0.227 4.227 6 N -0.402 5.402 7 N -0.038 5.038 8 C -0.099 4.099 9 C -0.222 4.222 10 C -0.074 4.074 11 N -0.101 5.101 12 C 0.110 3.890 13 C -0.574 4.574 14 H 0.104 0.896 15 C -0.126 4.126 16 N -0.523 5.523 17 Si 0.698 3.302 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.188 1.188 21 N -0.073 5.073 22 C -0.062 4.062 23 C 0.008 3.992 24 C -0.112 4.112 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.150 4.150 28 C -0.072 4.072 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.203 0.797 38 H 0.118 0.882 39 H 0.191 0.809 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.343 -18.660 6.365 22.746 hybrid contribution -0.117 -0.941 -2.450 2.627 sum 11.226 -19.601 3.915 22.925 Atomic orbital electron populations 1.21728 0.95376 1.01101 1.02487 1.21852 0.96612 0.96193 1.02356 1.20496 0.93309 0.91300 0.86868 0.90193 1.22344 0.96854 1.02394 1.01076 1.48008 1.80632 1.01668 1.09920 1.74429 1.11135 0.93678 1.24529 1.22945 1.00961 0.92398 0.93605 1.19072 1.18043 0.91124 0.93931 1.22397 1.00288 0.85368 0.99344 1.48755 1.45933 1.06735 1.08724 1.20104 0.96576 0.83522 0.88831 1.21076 1.15435 1.13898 1.06984 0.89557 1.24818 0.94504 0.95654 0.97672 1.69863 1.23201 1.20765 1.38454 0.86923 0.79789 0.79040 0.84439 1.19718 1.20501 1.18847 1.77560 1.16988 1.20281 0.92471 1.21860 1.00496 0.90299 0.93533 1.17637 0.95427 0.97534 0.88634 1.21274 0.99678 0.98568 0.91696 1.20954 0.97532 0.99499 0.96879 1.21065 0.96521 0.98189 0.98217 1.20879 1.00529 1.01127 0.92452 1.20925 0.94502 0.94799 0.97000 0.93087 0.92614 0.92510 0.91949 0.90747 0.93135 0.92370 0.91998 0.79667 0.88164 0.80948 0.93822 0.93354 0.92122 0.85868 0.86420 0.86830 0.86790 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.80 37.16 0.36 -0.88 16 2 C -0.13 -0.97 5.50 -26.73 -0.15 -1.12 16 3 C 0.19 1.75 3.25 -67.93 -0.22 1.53 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.17 -1.42 9.52 37.16 0.35 -1.06 16 6 N -0.66 -7.27 5.56 -4.89 -0.03 -7.30 16 7 N -0.23 -3.22 7.61 32.17 0.24 -2.97 16 8 C 0.11 1.60 10.88 -14.66 -0.16 1.44 16 9 C -0.21 -3.58 6.23 -103.37 -0.64 -4.22 16 10 C 0.08 1.36 11.35 -16.84 -0.19 1.17 16 11 N -0.32 -6.96 3.64 -62.23 -0.23 -7.19 16 12 C 0.23 5.22 5.29 -5.19 -0.03 5.19 16 13 C -0.54 -14.83 9.77 -34.44 -0.34 -15.17 16 14 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 17 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 21 N -0.25 -5.73 12.34 34.56 0.43 -5.31 16 22 C 0.11 2.09 6.85 -80.56 -0.55 1.54 16 23 C 0.01 0.17 5.46 -104.91 -0.57 -0.40 16 24 C -0.09 -1.57 9.78 -39.24 -0.38 -1.95 16 25 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 26 C -0.12 -1.51 10.04 -39.51 -0.40 -1.91 16 27 C -0.13 -1.69 10.03 -39.63 -0.40 -2.08 16 28 C -0.05 -0.79 7.54 -39.24 -0.30 -1.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.54 7.75 -51.93 -0.40 0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.61 7.98 -51.93 -0.41 0.20 16 37 H 0.37 3.51 8.61 -182.60 -1.57 1.93 16 38 H 0.10 1.15 8.02 -52.49 -0.42 0.73 16 39 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 41 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.11 1.18 7.90 -52.49 -0.41 0.77 16 47 H 0.12 1.81 6.98 -52.49 -0.37 1.44 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -31.46 395.64 -10.21 -41.67 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.59 Total: 4.74 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.10 Total: -19.18 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 1.19 Total: -48.31 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.46 -10.21 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790191751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.639 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds