Wall clock time and date at job start Tue Mar 31 2020 15:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.08991 * 109.47312 * 54.99592 * 3 2 1 5 5 C 1.52998 * 109.47163 * 174.99980 * 3 2 1 6 6 N 1.46509 * 109.46586 * 294.99781 * 3 2 1 7 7 N 1.40101 * 119.99657 * 150.00103 * 6 3 2 8 8 C 1.29706 * 120.00122 * 179.97438 * 7 6 3 9 9 C 1.47539 * 119.99985 * 180.02562 * 8 7 6 10 10 C 1.36675 * 126.66997 * 185.55911 * 9 8 7 11 11 N 1.34743 * 108.04523 * 179.83556 * 10 9 8 12 12 C 1.46510 * 125.27135 * 180.12946 * 11 10 9 13 13 C 1.50700 * 109.46885 * 125.33108 * 12 11 10 14 14 H 1.08005 * 120.00212 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00553 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99920 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47324 * 89.99819 * 17 15 13 19 19 H 1.48498 * 109.47385 * 209.99854 * 17 15 13 20 20 H 1.48504 * 109.47417 * 330.00019 * 17 15 13 21 21 N 1.39829 * 109.46374 * 0.44212 * 11 10 9 22 22 C 1.31555 * 108.80311 * 359.72448 * 21 11 10 23 23 C 1.48268 * 126.48557 * 180.02562 * 22 21 11 24 24 C 1.39395 * 120.12149 * 44.62594 * 23 22 21 25 25 C 1.38009 * 119.86813 * 179.76946 * 24 23 22 26 26 C 1.38329 * 120.12646 * 0.50991 * 25 24 23 27 27 C 1.38334 * 120.25620 * 359.73819 * 26 25 24 28 28 C 1.38007 * 120.12675 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47268 * 300.00312 * 1 2 3 31 31 H 1.09005 * 109.47039 * 59.99928 * 1 2 3 32 32 H 1.09003 * 109.47268 * 239.99688 * 2 1 3 33 33 H 1.08996 * 109.46918 * 119.99915 * 2 1 3 34 34 H 1.09001 * 109.47233 * 59.99620 * 5 3 2 35 35 H 1.08996 * 109.47265 * 299.99952 * 5 3 2 36 36 H 1.08996 * 109.47345 * 179.97438 * 5 3 2 37 37 H 0.96993 * 120.00233 * 329.99933 * 6 3 2 38 38 H 1.07998 * 119.99764 * 0.02562 * 8 7 6 39 39 H 1.08000 * 125.97947 * 0.02562 * 10 9 8 40 40 H 1.08994 * 109.47084 * 245.33457 * 12 11 10 41 41 H 1.09001 * 109.46566 * 5.33386 * 12 11 10 42 42 H 0.96996 * 120.00895 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.06803 * 0.02562 * 24 23 22 44 44 H 1.07996 * 119.93712 * 180.27875 * 25 24 23 45 45 H 1.07999 * 119.87710 * 179.77154 * 26 25 24 46 46 H 1.07999 * 119.93517 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.06456 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0974 -1.2520 7 7 1.4185 3.4785 -1.2767 8 6 1.0759 4.0585 -2.3852 9 6 0.8301 5.5130 -2.4114 10 6 0.3639 6.2431 -3.4685 11 7 0.2774 7.5307 -3.0808 12 6 -0.1835 8.6383 -3.9217 13 6 -1.3109 9.3595 -3.2289 14 1 -1.6499 9.0264 -2.2590 15 6 -1.9096 10.4445 -3.8331 16 7 -2.8938 11.0737 -3.2289 17 14 -1.3239 11.0202 -5.5109 18 1 -2.0930 10.3200 -6.5709 19 1 -1.5340 12.4852 -5.6328 20 1 0.1211 10.7130 -5.6631 21 7 0.7024 7.6472 -1.7538 22 6 1.0443 6.4562 -1.3119 23 6 1.5502 6.1303 0.0432 24 6 0.9342 6.6739 1.1693 25 6 1.4064 6.3633 2.4283 26 6 2.4954 5.5227 2.5736 27 6 3.1138 4.9844 1.4594 28 6 2.6473 5.2841 0.1956 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9995 0.9052 -0.7160 35 1 3.8532 0.9570 1.0571 36 1 3.9282 2.4719 0.1253 37 1 1.5578 1.5748 -2.0636 38 1 0.9705 3.4766 -3.2889 39 1 0.1067 5.8554 -4.4432 40 1 0.6400 9.3313 -4.0933 41 1 -0.5347 8.2476 -4.8768 42 1 -3.3148 11.8372 -3.6538 43 1 0.0865 7.3336 1.0570 44 1 0.9272 6.7802 3.3017 45 1 2.8638 5.2853 3.5606 46 1 3.9634 4.3284 1.5788 47 1 3.1307 4.8630 -0.6735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790191751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:21 Heat of formation + Delta-G solvation = 116.907613 kcal Electronic energy + Delta-G solvation = -27035.661340 eV Core-core repulsion = 23412.907866 eV Total energy + Delta-G solvation = -3622.753474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76530 -39.65933 -38.44472 -36.20701 -35.43920 -33.95008 -32.26226 -31.77902 -31.66015 -30.79628 -29.57538 -28.31911 -25.07659 -24.59704 -23.82570 -23.35781 -22.53403 -21.63634 -21.08544 -20.32976 -19.07972 -18.17896 -17.49117 -17.17748 -16.52646 -16.37399 -16.11808 -15.71556 -15.34830 -15.16084 -14.97347 -14.69751 -14.57107 -14.34760 -14.20714 -14.19218 -13.83261 -13.78333 -13.50160 -13.25344 -13.03177 -12.73037 -12.57746 -12.49793 -12.12677 -12.10641 -11.98403 -11.91495 -11.82662 -11.77525 -11.54200 -11.42394 -10.88251 -10.75636 -10.45337 -9.87012 -9.66762 -9.24325 -8.38275 -8.12061 -6.48785 0.27699 0.63157 0.81397 1.35004 1.38559 1.47967 1.49262 1.79592 2.22355 2.28422 2.46689 2.94375 3.05959 3.60358 3.82473 3.91024 4.14917 4.20330 4.22177 4.25129 4.27928 4.31427 4.37380 4.53759 4.60149 4.66870 4.67572 4.76701 4.79479 4.82778 4.91867 4.98734 5.02997 5.07226 5.11963 5.13227 5.21629 5.27707 5.28999 5.39402 5.49404 5.52436 5.69133 5.69777 5.79786 5.88284 5.96842 6.19806 6.38100 6.54448 6.57003 6.96535 7.14127 7.79601 8.79359 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.003084 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.627822 B = 9076.634529 C =10150.855276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.183 3.817 4 H 0.059 0.941 5 C -0.162 4.162 6 N -0.656 5.656 7 N -0.239 5.239 8 C 0.098 3.902 9 C -0.206 4.206 10 C 0.080 3.920 11 N -0.350 5.350 12 C 0.237 3.763 13 C -0.547 4.547 14 H 0.023 0.977 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.957 3.043 18 H -0.250 1.250 19 H -0.282 1.282 20 H -0.239 1.239 21 N -0.317 5.317 22 C 0.099 3.901 23 C -0.018 4.018 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.110 4.110 27 C -0.123 4.123 28 C -0.051 4.051 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.376 0.624 38 H 0.133 0.867 39 H 0.219 0.781 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.272 0.728 43 H 0.092 0.908 44 H 0.138 0.862 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.073 -23.556 4.098 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.078 3.922 4 H 0.078 0.922 5 C -0.221 4.221 6 N -0.394 5.394 7 N -0.047 5.047 8 C -0.114 4.114 9 C -0.221 4.221 10 C -0.070 4.070 11 N -0.130 5.130 12 C 0.117 3.883 13 C -0.586 4.586 14 H 0.041 0.959 15 C -0.185 4.185 16 N -0.583 5.583 17 Si 0.778 3.222 18 H -0.174 1.174 19 H -0.208 1.208 20 H -0.162 1.162 21 N -0.138 5.138 22 C -0.069 4.069 23 C -0.020 4.020 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.128 4.128 27 C -0.141 4.141 28 C -0.071 4.071 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.214 0.786 38 H 0.151 0.849 39 H 0.236 0.764 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.156 0.844 45 H 0.171 0.829 46 H 0.165 0.835 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.009 -21.997 5.390 26.630 hybrid contribution -0.925 -0.113 -1.865 2.085 sum 13.084 -22.110 3.524 25.932 Atomic orbital electron populations 1.21720 0.96274 1.01553 1.01123 1.21812 0.95657 0.94854 1.03833 1.20647 0.94167 0.92036 0.85394 0.92241 1.22277 0.95599 1.01814 1.02388 1.48109 1.79792 1.00490 1.11053 1.74323 1.09782 0.95540 1.25041 1.22867 1.02541 0.90966 0.95027 1.19468 1.16987 0.92670 0.92925 1.23142 0.99064 0.83651 1.01162 1.48591 1.47959 1.07838 1.08563 1.19892 0.94531 0.84155 0.89674 1.21225 1.17273 1.14991 1.05065 0.95894 1.25954 0.94216 0.95323 1.03049 1.70056 1.25240 1.21750 1.41208 0.85596 0.80696 0.78092 0.77852 1.17411 1.20784 1.16188 1.77455 1.19714 1.22688 0.93935 1.22456 0.99234 0.90236 0.94984 1.17815 0.97089 0.99305 0.87796 1.21221 0.99910 0.99539 0.93432 1.21212 0.98071 0.99579 0.96065 1.21491 0.95012 0.96299 0.99985 1.21261 1.00844 1.00563 0.91403 1.20922 0.93680 0.94304 0.98168 0.91756 0.93844 0.93998 0.90668 0.88973 0.92483 0.90506 0.93427 0.78557 0.84950 0.76407 0.93843 0.89716 0.91886 0.88999 0.84446 0.82896 0.83476 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.80 71.98 0.71 -1.49 16 2 C -0.12 -1.44 5.50 30.59 0.17 -1.27 16 3 C 0.18 2.99 3.25 44.99 0.15 3.13 16 4 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.16 -2.21 9.52 71.98 0.69 -1.53 16 6 N -0.66 -12.98 5.56 -169.38 -0.94 -13.93 16 7 N -0.24 -6.41 7.61 -52.15 -0.40 -6.81 16 8 C 0.10 2.67 10.88 87.46 0.95 3.62 16 9 C -0.21 -7.23 6.23 -19.06 -0.12 -7.35 16 10 C 0.08 2.75 11.35 83.88 0.95 3.70 16 11 N -0.35 -15.67 3.64 -350.80 -1.28 -16.94 16 12 C 0.24 10.99 5.29 85.63 0.45 11.44 16 13 C -0.55 -32.09 9.77 25.60 0.25 -31.84 16 14 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 15 C 0.01 0.76 5.47 84.65 0.46 1.22 16 16 N -0.94 -59.06 13.96 21.44 0.30 -58.76 16 17 Si 0.96 40.93 27.47 68.60 1.88 42.82 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 21 N -0.32 -15.55 12.34 -44.57 -0.55 -16.10 16 22 C 0.10 4.15 6.85 43.99 0.30 4.45 16 23 C -0.02 -0.66 5.46 -20.05 -0.11 -0.77 16 24 C -0.12 -4.41 9.78 22.49 0.22 -4.19 16 25 C -0.13 -3.64 10.03 22.24 0.22 -3.42 16 26 C -0.11 -2.45 10.04 22.31 0.22 -2.23 16 27 C -0.12 -2.85 10.03 22.24 0.22 -2.63 16 28 C -0.05 -1.52 7.54 22.49 0.17 -1.35 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.73 7.75 -2.38 -0.02 0.71 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.80 7.98 -2.39 -0.02 0.78 16 37 H 0.38 6.20 8.61 -213.33 -1.84 4.37 16 38 H 0.13 2.68 8.02 -2.91 -0.02 2.65 16 39 H 0.22 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.04 1.99 7.20 -2.39 -0.02 1.98 16 41 H 0.09 3.29 7.48 -2.39 -0.02 3.27 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.09 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 45 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.15 2.46 7.90 -2.91 -0.02 2.43 16 47 H 0.12 3.49 6.98 -2.91 -0.02 3.47 16 Total: -1.00 -77.26 395.64 3.99 -73.27 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.93 Total: 26.96 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.91 Total: -30.50 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -2.87 Total: -112.54 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.82 kcal Total: -77.26 3.99 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790191751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.181 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds