Wall clock time and date at job start Tue Mar 31 2020 15:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 C 1.53000 * 109.46855 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47406 * 179.97438 * 4 3 2 6 6 N 1.46891 * 109.47527 * 185.27632 * 5 4 3 7 7 C 1.46896 * 111.00285 * 284.11117 * 6 5 4 8 8 N 1.46499 * 109.47359 * 169.99827 * 7 6 5 9 9 N 1.40168 * 126.14746 * 270.18020 * 8 7 6 10 10 C 1.32241 * 107.76021 * 180.26420 * 9 8 7 11 11 C 1.40118 * 125.92793 * 179.74549 * 10 9 8 12 12 H 1.07993 * 120.00177 * 180.02562 * 11 10 9 13 13 C 1.40040 * 119.99773 * 359.97438 * 11 10 9 14 14 N 1.30796 * 120.00155 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99626 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47262 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46976 * 120.00308 * 15 13 11 18 18 H 1.48497 * 109.47186 * 239.99923 * 15 13 11 19 19 N 1.38497 * 108.14603 * 359.74701 * 10 9 8 20 20 C 1.46497 * 125.83672 * 179.97438 * 19 10 9 21 21 C 1.34729 * 108.33156 * 0.02562 * 19 10 9 22 22 S 1.71201 * 125.97617 * 180.02562 * 21 19 10 23 23 C 1.46898 * 111.00015 * 160.15787 * 6 5 4 24 24 C 1.53000 * 109.46943 * 292.33205 * 23 6 5 25 25 C 1.52999 * 109.47252 * 52.33519 * 23 6 5 26 26 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47592 * 300.00311 * 1 2 3 28 28 H 1.09000 * 109.46840 * 60.00417 * 1 2 3 29 29 H 1.08992 * 109.47128 * 239.99330 * 2 1 3 30 30 H 1.09000 * 109.46840 * 119.99583 * 2 1 3 31 31 H 1.08992 * 109.47799 * 59.99741 * 3 2 1 32 32 H 1.09000 * 109.47056 * 299.99451 * 3 2 1 33 33 H 1.09001 * 109.47592 * 59.99689 * 4 3 2 34 34 H 1.09004 * 109.47308 * 299.99454 * 4 3 2 35 35 H 1.09010 * 109.46891 * 65.27466 * 5 4 3 36 36 H 1.09000 * 109.46718 * 305.28251 * 5 4 3 37 37 H 1.09007 * 109.47404 * 50.00020 * 7 6 5 38 38 H 1.09002 * 109.47328 * 290.00139 * 7 6 5 39 39 H 0.97002 * 119.99646 * 179.97438 * 14 13 11 40 40 H 1.08991 * 109.47495 * 270.02054 * 20 19 10 41 41 H 1.09006 * 109.47055 * 30.01986 * 20 19 10 42 42 H 1.09006 * 109.47368 * 150.01679 * 20 19 10 43 43 H 1.09007 * 109.47005 * 172.33484 * 23 6 5 44 44 H 1.08994 * 109.47335 * 57.59238 * 24 23 6 45 45 H 1.09005 * 109.46770 * 177.58905 * 24 23 6 46 46 H 1.08997 * 109.47558 * 297.58413 * 24 23 6 47 47 H 1.08993 * 109.47157 * 60.00430 * 25 23 6 48 48 H 1.09000 * 109.46771 * 180.02562 * 25 23 6 49 49 H 1.08998 * 109.47193 * 299.99923 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5434 2.8869 -0.1267 7 6 6.1823 2.5134 1.1422 8 7 7.6138 2.2931 0.9221 9 7 8.2195 1.0778 0.5746 10 6 9.5209 1.2899 0.4739 11 6 10.4877 0.3293 0.1485 12 1 11.5293 0.6089 0.0930 13 6 10.1033 -0.9935 -0.1036 14 7 8.8418 -1.3322 -0.0358 15 14 11.3922 -2.2739 -0.5381 16 1 12.7352 -1.6403 -0.5496 17 1 11.3679 -3.3629 0.4711 18 1 11.0983 -2.8364 -1.8805 19 7 9.7624 2.6262 0.7459 20 6 11.0741 3.2786 0.7432 21 6 8.5850 3.2235 1.0145 22 16 8.3617 4.8743 1.4095 23 6 6.0294 4.1910 -0.5969 24 6 5.5739 4.4148 -2.0403 25 6 5.4627 5.2980 0.2942 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 3.7954 3.3714 0.9331 36 1 3.6418 3.4249 -0.8394 37 1 5.7281 1.5982 1.5222 38 1 6.0454 3.3153 1.8678 39 1 8.5756 -2.2484 -0.2108 40 1 11.5127 3.2168 1.7391 41 1 11.7268 2.7792 0.0272 42 1 10.9588 4.3253 0.4613 43 1 7.1184 4.2105 -0.5524 44 1 4.4870 4.3527 -2.0921 45 1 5.8979 5.4003 -2.3748 46 1 6.0125 3.6509 -2.6823 47 1 5.7872 5.1386 1.3224 48 1 5.8230 6.2657 -0.0550 49 1 4.3738 5.2785 0.2497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794619348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:54 Heat of formation + Delta-G solvation = 63.922265 kcal Electronic energy + Delta-G solvation = -26934.434438 eV Core-core repulsion = 23444.827298 eV Total energy + Delta-G solvation = -3489.607140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91836 -38.51349 -35.72332 -34.36253 -33.88658 -32.12263 -31.07012 -29.76587 -27.61466 -26.75429 -26.54076 -25.50038 -24.13884 -21.92463 -21.64045 -20.91875 -20.86360 -19.02854 -17.74339 -16.69697 -16.10090 -15.72136 -15.64278 -15.32616 -14.91644 -14.66270 -14.52675 -13.95678 -13.70563 -13.45121 -13.34436 -12.96064 -12.82599 -12.41103 -12.35516 -12.20561 -11.86446 -11.79213 -11.61919 -11.54443 -11.51765 -11.33893 -11.13265 -10.97485 -10.88255 -10.73292 -10.64316 -10.53970 -10.46518 -10.29561 -10.16502 -9.94737 -9.51839 -9.17811 -8.84834 -7.93602 -7.02852 -6.76860 -6.59166 -5.12460 2.31410 2.55780 2.78023 2.91855 2.96771 3.35559 3.54580 3.65494 4.05360 4.27545 4.84039 4.87056 4.91922 5.08361 5.15911 5.27776 5.39929 5.41126 5.53538 5.59308 5.61684 5.65202 5.68561 5.78037 5.83872 5.84181 5.86328 5.95113 6.01384 6.03853 6.05524 6.08483 6.14865 6.25071 6.26923 6.29543 6.39059 6.49044 6.56417 6.57811 6.70881 6.81532 6.90435 7.00530 7.33444 7.43751 7.61895 7.81562 8.24301 8.36542 9.16160 9.94580 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009301 B = 0.004549 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.688455 B = 6153.991372 C = 8554.322419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.118 4.118 5 C 0.061 3.939 6 N -0.541 5.541 7 C 0.322 3.678 8 N -0.367 5.367 9 N -0.328 5.328 10 C 0.371 3.629 11 C -0.439 4.439 12 H 0.097 0.903 13 C 0.076 3.924 14 N -0.735 5.735 15 Si 0.927 3.073 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.270 1.270 19 N -0.514 5.514 20 C 0.100 3.900 21 C 0.460 3.540 22 S -0.710 6.710 23 C 0.069 3.931 24 C -0.138 4.138 25 C -0.166 4.166 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.285 0.715 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 0.681 -1.675 7.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.156 4.156 5 C -0.067 4.067 6 N -0.266 5.266 7 C 0.110 3.890 8 N -0.152 5.152 9 N -0.159 5.159 10 C 0.122 3.878 11 C -0.480 4.480 12 H 0.115 0.885 13 C -0.150 4.150 14 N -0.359 5.359 15 Si 0.751 3.249 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.215 5.215 20 C -0.043 4.043 21 C 0.090 3.910 22 S -0.585 6.585 23 C -0.039 4.039 24 C -0.195 4.195 25 C -0.225 4.225 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.791 0.405 -1.860 8.995 hybrid contribution 1.068 -0.351 0.203 1.143 sum -7.723 0.053 -1.657 7.899 Atomic orbital electron populations 1.21778 0.96256 1.01322 1.01553 1.21522 0.95363 0.97126 1.02264 1.21563 0.95626 0.96595 1.01645 1.21631 0.94158 0.96584 1.03179 1.22046 0.86945 0.97011 1.00691 1.62118 1.05419 1.30311 1.28787 1.21760 0.75014 1.01297 0.90927 1.49198 1.06204 1.07047 1.52762 1.79445 1.03062 0.96379 1.37010 1.21357 0.92348 0.80555 0.93584 1.18376 0.93283 0.91466 1.44911 0.88502 1.25827 0.96536 0.99151 0.93508 1.69889 1.16306 1.19980 1.29730 0.85930 0.80504 0.79558 0.78953 1.18208 1.19528 1.19499 1.45979 1.06930 1.09710 1.58865 1.21752 0.80767 0.99014 1.02773 1.22969 0.83614 0.93741 0.90673 1.92715 1.92692 0.95999 1.77074 1.21993 1.02182 0.86042 0.93694 1.21821 1.00400 1.00929 0.96387 1.22366 0.98200 0.99447 1.02472 0.93009 0.92938 0.92925 0.91941 0.92015 0.92336 0.92211 0.90857 0.92065 0.94604 0.90359 0.88117 0.90774 0.90416 0.91532 0.89783 0.89230 0.88147 0.93245 0.92719 0.92623 0.90664 0.92657 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.12 -1.23 5.21 -26.73 -0.14 -1.37 16 4 C -0.12 -1.55 5.25 -26.73 -0.14 -1.69 16 5 C 0.06 0.86 3.54 -3.83 -0.01 0.84 16 6 N -0.54 -9.57 4.51 -230.53 -1.04 -10.61 16 7 C 0.32 6.26 5.70 -63.32 -0.36 5.90 16 8 N -0.37 -8.47 3.59 -65.05 -0.23 -8.71 16 9 N -0.33 -8.40 10.77 31.21 0.34 -8.06 16 10 C 0.37 9.14 7.50 -155.27 -1.16 7.98 16 11 C -0.44 -10.25 8.98 -38.20 -0.34 -10.59 16 12 H 0.10 2.04 7.11 -52.49 -0.37 1.66 16 13 C 0.08 1.73 5.50 -17.32 -0.10 1.63 16 14 N -0.73 -17.83 11.90 55.55 0.66 -17.17 16 15 Si 0.93 16.66 29.56 -169.99 -5.02 11.63 16 16 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 17 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 N -0.51 -11.59 3.17 -124.66 -0.39 -11.99 16 20 C 0.10 1.78 10.65 59.85 0.64 2.42 16 21 C 0.46 10.72 6.61 -86.93 -0.57 10.15 16 22 S -0.71 -16.46 25.02 -107.50 -2.69 -19.15 16 23 C 0.07 1.24 2.43 -67.71 -0.16 1.08 16 24 C -0.14 -2.15 9.24 37.16 0.34 -1.81 16 25 C -0.17 -2.75 7.51 37.16 0.28 -2.47 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.86 6.97 -51.93 -0.36 0.50 16 35 H 0.04 0.48 7.33 -51.92 -0.38 0.10 16 36 H 0.08 1.03 5.87 -51.93 -0.30 0.73 16 37 H 0.10 1.89 6.73 -51.93 -0.35 1.54 16 38 H 0.07 1.44 5.99 -51.93 -0.31 1.13 16 39 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.32 7.32 -51.93 -0.38 0.94 16 42 H 0.09 1.57 7.61 -51.93 -0.40 1.17 16 43 H 0.10 2.20 4.59 -51.92 -0.24 1.96 16 44 H 0.05 0.68 6.24 -51.93 -0.32 0.36 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.40 5.27 -51.93 -0.27 1.13 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.04 0.52 6.71 -51.93 -0.35 0.17 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -28.33 387.52 -12.32 -40.65 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.25 Total: 7.89 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -1.53 Total: 9.67 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.67 Total: -56.53 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.02 Total: 11.63 kcal Atomic # 16 Polarization: -16.46 SS G_CDS: -2.69 Total: -19.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.33 -12.32 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794619348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.576 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds