Wall clock time and date at job start Tue Mar 31 2020 15:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 C 1.53000 * 109.46855 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47406 * 179.97438 * 4 3 2 6 6 N 1.46891 * 109.47527 * 185.27632 * 5 4 3 7 7 C 1.46896 * 111.00285 * 284.11117 * 6 5 4 8 8 N 1.46499 * 109.47359 * 169.99827 * 7 6 5 9 9 N 1.40168 * 126.14746 * 270.18020 * 8 7 6 10 10 C 1.32241 * 107.76021 * 180.26420 * 9 8 7 11 11 C 1.40118 * 125.92793 * 179.74549 * 10 9 8 12 12 H 1.07993 * 120.00177 * 180.02562 * 11 10 9 13 13 C 1.40040 * 119.99773 * 359.97438 * 11 10 9 14 14 N 1.30796 * 120.00155 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99626 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47262 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46976 * 120.00308 * 15 13 11 18 18 H 1.48497 * 109.47186 * 239.99923 * 15 13 11 19 19 N 1.38497 * 108.14603 * 359.74701 * 10 9 8 20 20 C 1.46497 * 125.83672 * 179.97438 * 19 10 9 21 21 C 1.34729 * 108.33156 * 0.02562 * 19 10 9 22 22 S 1.71201 * 125.97617 * 180.02562 * 21 19 10 23 23 C 1.46898 * 111.00015 * 160.15787 * 6 5 4 24 24 C 1.53000 * 109.46943 * 292.33205 * 23 6 5 25 25 C 1.52999 * 109.47252 * 52.33519 * 23 6 5 26 26 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47592 * 300.00311 * 1 2 3 28 28 H 1.09000 * 109.46840 * 60.00417 * 1 2 3 29 29 H 1.08992 * 109.47128 * 239.99330 * 2 1 3 30 30 H 1.09000 * 109.46840 * 119.99583 * 2 1 3 31 31 H 1.08992 * 109.47799 * 59.99741 * 3 2 1 32 32 H 1.09000 * 109.47056 * 299.99451 * 3 2 1 33 33 H 1.09001 * 109.47592 * 59.99689 * 4 3 2 34 34 H 1.09004 * 109.47308 * 299.99454 * 4 3 2 35 35 H 1.09010 * 109.46891 * 65.27466 * 5 4 3 36 36 H 1.09000 * 109.46718 * 305.28251 * 5 4 3 37 37 H 1.09007 * 109.47404 * 50.00020 * 7 6 5 38 38 H 1.09002 * 109.47328 * 290.00139 * 7 6 5 39 39 H 0.97002 * 119.99646 * 179.97438 * 14 13 11 40 40 H 1.08991 * 109.47495 * 270.02054 * 20 19 10 41 41 H 1.09006 * 109.47055 * 30.01986 * 20 19 10 42 42 H 1.09006 * 109.47368 * 150.01679 * 20 19 10 43 43 H 1.09007 * 109.47005 * 172.33484 * 23 6 5 44 44 H 1.08994 * 109.47335 * 57.59238 * 24 23 6 45 45 H 1.09005 * 109.46770 * 177.58905 * 24 23 6 46 46 H 1.08997 * 109.47558 * 297.58413 * 24 23 6 47 47 H 1.08993 * 109.47157 * 60.00430 * 25 23 6 48 48 H 1.09000 * 109.46771 * 180.02562 * 25 23 6 49 49 H 1.08998 * 109.47193 * 299.99923 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5434 2.8869 -0.1267 7 6 6.1823 2.5134 1.1422 8 7 7.6138 2.2931 0.9221 9 7 8.2195 1.0778 0.5746 10 6 9.5209 1.2899 0.4739 11 6 10.4877 0.3293 0.1485 12 1 11.5293 0.6089 0.0930 13 6 10.1033 -0.9935 -0.1036 14 7 8.8418 -1.3322 -0.0358 15 14 11.3922 -2.2739 -0.5381 16 1 12.7352 -1.6403 -0.5496 17 1 11.3679 -3.3629 0.4711 18 1 11.0983 -2.8364 -1.8805 19 7 9.7624 2.6262 0.7459 20 6 11.0741 3.2786 0.7432 21 6 8.5850 3.2235 1.0145 22 16 8.3617 4.8743 1.4095 23 6 6.0294 4.1910 -0.5969 24 6 5.5739 4.4148 -2.0403 25 6 5.4627 5.2980 0.2942 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 3.7954 3.3714 0.9331 36 1 3.6418 3.4249 -0.8394 37 1 5.7281 1.5982 1.5222 38 1 6.0454 3.3153 1.8678 39 1 8.5756 -2.2484 -0.2108 40 1 11.5127 3.2168 1.7391 41 1 11.7268 2.7792 0.0272 42 1 10.9588 4.3253 0.4613 43 1 7.1184 4.2105 -0.5524 44 1 4.4870 4.3527 -2.0921 45 1 5.8979 5.4003 -2.3748 46 1 6.0125 3.6509 -2.6823 47 1 5.7872 5.1386 1.3224 48 1 5.8230 6.2657 -0.0550 49 1 4.3738 5.2785 0.2497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794619348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:53 Heat of formation + Delta-G solvation = 50.756961 kcal Electronic energy + Delta-G solvation = -26935.005328 eV Core-core repulsion = 23444.827298 eV Total energy + Delta-G solvation = -3490.178031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.66240 -39.88893 -36.72271 -36.00674 -35.58089 -33.31847 -32.66553 -31.15576 -29.07841 -28.29436 -28.02794 -26.70959 -25.58053 -23.37183 -22.99944 -22.58713 -21.82988 -20.42409 -19.45879 -18.34025 -17.65890 -17.40069 -16.87273 -16.69289 -16.33758 -16.18547 -16.05157 -15.21689 -14.94725 -14.71922 -14.50663 -14.25106 -13.89240 -13.79989 -13.73166 -13.45481 -13.39931 -13.23770 -13.05946 -12.76485 -12.74061 -12.60618 -12.48671 -12.43822 -12.15692 -11.95406 -11.91119 -11.77851 -11.67364 -11.55176 -11.39159 -11.35574 -11.30138 -10.82651 -10.62328 -9.32385 -8.75359 -8.58040 -8.39924 -6.95370 0.55042 0.81835 1.28140 1.44658 1.61607 1.67916 1.86664 2.12970 2.42352 2.86988 3.10790 3.59689 3.83094 3.98964 4.02388 4.05519 4.15690 4.26493 4.28227 4.29593 4.44511 4.48350 4.49976 4.57285 4.64585 4.69418 4.71300 4.76787 4.79738 4.89800 4.92119 4.94597 4.99003 5.05978 5.10536 5.11141 5.22488 5.25203 5.27359 5.28159 5.37926 5.46185 5.51680 5.54273 5.80286 5.95364 6.01898 6.26540 6.49892 6.58550 7.35565 8.26234 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009301 B = 0.004549 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.688455 B = 6153.991372 C = 8554.322419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.110 4.110 5 C 0.063 3.937 6 N -0.551 5.551 7 C 0.322 3.678 8 N -0.368 5.368 9 N -0.363 5.363 10 C 0.351 3.649 11 C -0.454 4.454 12 H 0.118 0.882 13 C 0.035 3.965 14 N -0.775 5.775 15 Si 1.005 2.995 16 H -0.244 1.244 17 H -0.268 1.268 18 H -0.269 1.269 19 N -0.518 5.518 20 C 0.095 3.905 21 C 0.450 3.550 22 S -0.721 6.721 23 C 0.071 3.929 24 C -0.129 4.129 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.291 0.709 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 0.483 -2.260 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.064 4.064 6 N -0.277 5.277 7 C 0.111 3.889 8 N -0.154 5.154 9 N -0.196 5.196 10 C 0.102 3.898 11 C -0.495 4.495 12 H 0.135 0.865 13 C -0.188 4.188 14 N -0.400 5.400 15 Si 0.824 3.176 16 H -0.167 1.167 17 H -0.193 1.193 18 H -0.194 1.194 19 N -0.219 5.219 20 C -0.046 4.046 21 C 0.079 3.921 22 S -0.596 6.596 23 C -0.038 4.038 24 C -0.187 4.187 25 C -0.210 4.210 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.042 0.239 -2.441 9.369 hybrid contribution 1.124 -0.293 0.388 1.225 sum -7.918 -0.053 -2.053 8.180 Atomic orbital electron populations 1.21748 0.94764 1.01898 1.02166 1.21525 0.96667 0.96711 1.01554 1.21505 0.93275 0.97121 1.02672 1.21552 0.96165 0.95685 1.01424 1.22164 0.84595 0.97768 1.01863 1.62132 1.07413 1.30414 1.27718 1.21841 0.73940 1.01224 0.91917 1.49475 1.07263 1.06396 1.52273 1.79340 1.04153 0.97830 1.38240 1.21735 0.92572 0.81579 0.93942 1.18927 0.94075 0.91872 1.44611 0.86454 1.26884 0.98494 1.00890 0.92515 1.69992 1.18633 1.20897 1.30472 0.84783 0.78036 0.76380 0.78370 1.16656 1.19267 1.19397 1.46269 1.07998 1.09266 1.58338 1.22017 0.79317 0.98941 1.04319 1.23077 0.84134 0.93808 0.91068 1.92588 1.92941 0.96329 1.77751 1.21869 0.99928 0.86572 0.95422 1.21746 1.01740 1.00879 0.94314 1.22189 0.99666 0.98552 1.00628 0.92534 0.92320 0.92281 0.92746 0.92756 0.91237 0.91111 0.92983 0.93477 0.93431 0.88789 0.88154 0.90890 0.89849 0.90077 0.87712 0.89188 0.92269 0.90879 0.91679 0.94342 0.92875 0.93054 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.13 -2.47 5.93 30.59 0.18 -2.29 16 3 C -0.11 -2.12 5.21 30.59 0.16 -1.96 16 4 C -0.11 -2.88 5.25 30.59 0.16 -2.72 16 5 C 0.06 1.70 3.54 86.30 0.31 2.01 16 6 N -0.55 -19.62 4.51 -883.27 -3.98 -23.60 16 7 C 0.32 12.87 5.70 170.81 0.97 13.85 16 8 N -0.37 -17.55 3.59 -359.72 -1.29 -18.84 16 9 N -0.36 -19.19 10.77 -55.17 -0.59 -19.78 16 10 C 0.35 17.56 7.50 133.52 1.00 18.56 16 11 C -0.45 -21.04 8.98 23.16 0.21 -20.83 16 12 H 0.12 4.76 7.11 -2.91 -0.02 4.74 16 13 C 0.04 1.57 5.50 85.28 0.47 2.04 16 14 N -0.78 -38.14 11.90 21.84 0.26 -37.88 16 15 Si 1.01 33.12 29.56 68.60 2.03 35.15 16 16 H -0.24 -7.39 7.11 99.48 0.71 -6.68 16 17 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 18 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 19 N -0.52 -23.63 3.17 -548.30 -1.74 -25.37 16 20 C 0.10 3.34 10.65 127.77 1.36 4.70 16 21 C 0.45 21.45 6.61 179.06 1.18 22.63 16 22 S -0.72 -33.87 25.02 -56.49 -1.41 -35.29 16 23 C 0.07 2.52 2.43 44.92 0.11 2.63 16 24 C -0.13 -3.91 9.24 71.98 0.66 -3.24 16 25 C -0.15 -4.89 7.51 71.98 0.54 -4.35 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.35 6.97 -2.39 -0.02 1.33 16 35 H 0.05 1.19 7.33 -2.38 -0.02 1.17 16 36 H 0.09 2.25 5.87 -2.39 -0.01 2.23 16 37 H 0.10 3.93 6.73 -2.38 -0.02 3.92 16 38 H 0.07 2.91 5.99 -2.39 -0.01 2.89 16 39 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.10 3.17 7.32 -2.38 -0.02 3.15 16 42 H 0.09 3.13 7.61 -2.38 -0.02 3.11 16 43 H 0.06 2.65 4.59 -2.38 -0.01 2.64 16 44 H 0.07 1.84 6.24 -2.39 -0.01 1.82 16 45 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.05 1.96 5.27 -2.39 -0.01 1.95 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.06 1.67 6.71 -2.39 -0.02 1.65 16 Total: -1.00 -62.40 387.52 2.23 -60.17 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.93 Total: 36.02 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 8.03 Total: 29.42 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -7.35 Total: -125.48 kcal Atomic # 14 Polarization: 33.12 SS G_CDS: 2.03 Total: 35.15 kcal Atomic # 16 Polarization: -33.87 SS G_CDS: -1.41 Total: -35.29 kcal Total: -62.40 2.23 -60.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794619348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.928 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds