Wall clock time and date at job start Tue Mar 31 2020 15:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47092 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00394 * 170.00004 * 5 4 3 7 7 N 1.46507 * 109.47004 * 289.96272 * 6 5 4 8 8 N 1.40160 * 126.14745 * 92.57769 * 7 6 5 9 9 C 1.32232 * 107.75830 * 179.97438 * 8 7 6 10 10 C 1.40122 * 125.92578 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99792 * 186.05872 * 10 9 8 12 12 C 1.40032 * 120.00464 * 6.05847 * 10 9 8 13 13 N 1.30800 * 119.99756 * 353.94620 * 12 10 9 14 14 Si 1.86792 * 120.00628 * 173.94735 * 12 10 9 15 15 H 1.48497 * 109.47174 * 94.94056 * 14 12 10 16 16 H 1.48498 * 109.47498 * 214.94788 * 14 12 10 17 17 H 1.48500 * 109.46946 * 334.94481 * 14 12 10 18 18 N 1.38504 * 108.15252 * 0.02562 * 9 8 7 19 19 C 1.46490 * 125.84165 * 179.97438 * 18 9 8 20 20 C 1.34738 * 108.31884 * 359.73487 * 18 9 8 21 21 S 1.71199 * 125.96712 * 180.26405 * 20 18 9 22 22 C 1.46900 * 111.00170 * 293.95557 * 5 4 3 23 23 H 1.08996 * 109.47186 * 45.88095 * 22 5 4 24 24 C 1.53001 * 109.47184 * 285.88222 * 22 5 4 25 25 C 1.53001 * 109.47569 * 165.88515 * 22 5 4 26 26 C 1.53004 * 109.46912 * 295.27131 * 25 22 5 27 27 H 1.09001 * 109.46828 * 60.00037 * 1 2 3 28 28 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47161 * 300.00037 * 1 2 3 30 30 H 1.09001 * 109.47161 * 239.99963 * 2 1 3 31 31 H 1.08998 * 109.47511 * 119.99704 * 2 1 3 32 32 H 1.09001 * 109.47088 * 59.99918 * 3 2 1 33 33 H 1.08997 * 109.47166 * 300.00257 * 3 2 1 34 34 H 1.09001 * 109.47161 * 59.99963 * 4 3 2 35 35 H 1.09001 * 109.46828 * 299.99963 * 4 3 2 36 36 H 1.08995 * 109.47604 * 169.95977 * 6 5 4 37 37 H 1.09002 * 109.46630 * 49.95313 * 6 5 4 38 38 H 0.97000 * 120.00460 * 179.97438 * 13 12 10 39 39 H 1.09006 * 109.47184 * 89.99833 * 19 18 9 40 40 H 1.08998 * 109.47549 * 209.99743 * 19 18 9 41 41 H 1.08999 * 109.47267 * 330.00595 * 19 18 9 42 42 H 1.09000 * 109.46529 * 54.47881 * 24 22 5 43 43 H 1.08998 * 109.47607 * 174.47748 * 24 22 5 44 44 H 1.09001 * 109.47122 * 294.48231 * 24 22 5 45 45 H 1.09005 * 109.47058 * 55.26763 * 25 22 5 46 46 H 1.08994 * 109.47369 * 175.27401 * 25 22 5 47 47 H 1.08991 * 109.47313 * 179.97438 * 26 25 22 48 48 H 1.08999 * 109.46963 * 300.00131 * 26 25 22 49 49 H 1.09008 * 109.47049 * 59.99917 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5084 2.8739 0.2387 7 7 5.7871 2.4946 1.6262 8 7 6.0805 1.2041 2.0875 9 6 6.2695 1.2762 3.3943 10 6 6.5850 0.2042 4.2397 11 1 6.6229 0.3527 5.3088 12 6 6.8512 -1.0596 3.6986 13 7 6.6903 -1.2696 2.4176 14 14 7.4359 -2.4456 4.8059 15 1 6.2718 -3.2632 5.2321 16 1 8.3963 -3.3009 4.0634 17 1 8.1043 -1.8746 6.0027 18 7 6.1017 2.5951 3.7824 19 6 6.2230 3.1092 5.1488 20 6 5.8128 3.3253 2.6875 21 16 5.5249 5.0125 2.6514 22 6 3.7107 3.5087 -1.2538 23 1 2.6680 3.3070 -1.4989 24 6 4.6083 2.9939 -2.3809 25 6 3.9135 5.0162 -1.0888 26 6 2.9322 5.5514 -0.0439 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 5.8744 3.8845 0.0578 37 1 6.0101 2.1795 -0.4354 38 1 6.8750 -2.1448 2.0426 39 1 7.2545 3.4095 5.3337 40 1 5.5662 3.9702 5.2728 41 1 5.9390 2.3305 5.8566 42 1 4.5378 1.9074 -2.4338 43 1 4.2856 3.4255 -3.3283 44 1 5.6409 3.2818 -2.1833 45 1 4.9348 5.2119 -0.7619 46 1 3.7356 5.5133 -2.0424 47 1 3.0769 6.6252 0.0740 48 1 1.9110 5.3557 -0.3707 49 1 3.1101 5.0543 0.9098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794620464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:36 Heat of formation + Delta-G solvation = 63.151345 kcal Electronic energy + Delta-G solvation = -27504.378418 eV Core-core repulsion = 24014.737848 eV Total energy + Delta-G solvation = -3489.640570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83648 -38.74397 -34.98784 -34.49670 -33.91959 -32.28359 -30.73933 -29.40341 -28.77877 -26.92878 -26.54227 -24.51980 -23.76412 -22.21992 -21.62094 -20.92640 -20.79144 -19.06490 -17.70033 -16.80874 -15.89958 -15.70184 -15.56325 -15.26219 -14.81583 -14.55539 -14.22996 -13.95316 -13.55905 -13.44032 -13.29782 -12.97088 -12.84905 -12.57842 -12.25699 -12.18793 -12.09128 -11.80686 -11.61627 -11.58568 -11.47766 -11.10885 -10.98336 -10.85419 -10.78200 -10.69928 -10.61543 -10.46268 -10.37918 -10.26048 -10.13425 -9.91696 -9.50025 -9.14227 -8.85733 -7.95662 -7.05876 -6.66606 -6.55285 -5.13177 2.40696 2.67660 2.76492 2.90226 2.94021 3.45316 3.53460 3.64497 4.07819 4.31638 4.83274 4.94624 5.09408 5.14718 5.22276 5.28976 5.29469 5.42220 5.55184 5.59030 5.60372 5.67540 5.78319 5.84682 5.87370 5.88642 5.94651 5.98502 5.99480 6.10530 6.12244 6.18371 6.21843 6.27123 6.35169 6.38125 6.48885 6.57288 6.60447 6.64336 6.66841 6.80926 7.04106 7.10474 7.31800 7.35100 7.66702 7.84287 8.25395 8.36044 9.17934 9.91358 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.005126 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.568831 B = 5460.558691 C = 7067.750526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.051 3.949 5 N -0.533 5.533 6 C 0.326 3.674 7 N -0.376 5.376 8 N -0.345 5.345 9 C 0.376 3.624 10 C -0.439 4.439 11 H 0.096 0.904 12 C 0.078 3.922 13 N -0.738 5.738 14 Si 0.926 3.074 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.259 1.259 18 N -0.518 5.518 19 C 0.102 3.898 20 C 0.478 3.522 21 S -0.702 6.702 22 C 0.086 3.914 23 H 0.086 0.914 24 C -0.189 4.189 25 C -0.110 4.110 26 C -0.139 4.139 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.284 0.716 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.034 0.966 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 -0.468 -4.868 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.077 4.077 5 N -0.258 5.258 6 C 0.114 3.886 7 N -0.162 5.162 8 N -0.176 5.176 9 C 0.127 3.873 10 C -0.480 4.480 11 H 0.114 0.886 12 C -0.148 4.148 13 N -0.363 5.363 14 Si 0.749 3.251 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.182 1.182 18 N -0.220 5.220 19 C -0.042 4.042 20 C 0.110 3.890 21 S -0.578 6.578 22 C -0.023 4.023 23 H 0.104 0.896 24 C -0.248 4.248 25 C -0.148 4.148 26 C -0.196 4.196 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.574 0.000 -5.608 7.907 hybrid contribution 0.866 -1.570 0.425 1.843 sum -4.707 -1.571 -5.183 7.176 Atomic orbital electron populations 1.21743 0.96132 1.01151 1.01544 1.21471 0.95423 0.97112 1.02111 1.21577 0.95062 0.96142 1.01992 1.22238 0.94835 0.88425 1.02154 1.61907 1.13347 1.16419 1.34149 1.21689 0.88674 1.00961 0.77258 1.49148 1.53915 1.06639 1.06511 1.79300 1.38507 0.92395 1.07406 1.21247 0.93377 0.82226 0.90499 1.18333 1.44992 0.90834 0.93859 0.88580 1.25808 0.93695 0.99617 0.95697 1.69880 1.30396 1.23865 1.12140 0.85985 0.79311 0.79551 0.80232 1.19185 1.19801 1.18240 1.45980 1.59976 1.08007 1.07994 1.21719 1.02885 1.00583 0.78963 1.22910 0.88775 0.94090 0.83246 1.92661 1.78997 0.91592 1.94533 1.21756 0.99389 0.94595 0.86570 0.89643 1.22532 1.00925 1.01577 0.99783 1.21536 1.01279 0.93291 0.98704 1.21626 0.96787 0.99996 1.01233 0.93091 0.93087 0.92809 0.92427 0.91769 0.91505 0.92522 0.95112 0.88905 0.87346 0.91894 0.90487 0.91622 0.89259 0.89972 0.92439 0.92099 0.92375 0.91428 0.92734 0.93986 0.94647 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.11 -1.61 5.17 -26.73 -0.14 -1.74 16 4 C 0.05 0.87 4.77 -3.83 -0.02 0.85 16 5 N -0.53 -9.07 3.99 -230.53 -0.92 -9.99 16 6 C 0.33 6.22 4.57 -63.31 -0.29 5.93 16 7 N -0.38 -8.55 3.41 -65.05 -0.22 -8.77 16 8 N -0.34 -8.53 9.81 31.21 0.31 -8.23 16 9 C 0.38 9.12 7.49 -155.27 -1.16 7.96 16 10 C -0.44 -10.09 8.99 -38.20 -0.34 -10.43 16 11 H 0.10 2.00 7.08 -52.49 -0.37 1.63 16 12 C 0.08 1.73 5.49 -17.32 -0.10 1.64 16 13 N -0.74 -17.44 11.93 55.55 0.66 -16.78 16 14 Si 0.93 16.45 29.56 -169.99 -5.03 11.43 16 15 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 16 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 18 N -0.52 -11.68 3.17 -124.66 -0.39 -12.07 16 19 C 0.10 1.82 10.66 59.84 0.64 2.46 16 20 C 0.48 11.25 7.84 -86.93 -0.68 10.57 16 21 S -0.70 -16.78 29.45 -107.50 -3.17 -19.95 16 22 C 0.09 1.19 2.18 -67.71 -0.15 1.04 16 23 H 0.09 1.13 5.98 -51.93 -0.31 0.82 16 24 C -0.19 -2.33 8.30 37.16 0.31 -2.02 16 25 C -0.11 -1.56 5.40 -26.73 -0.14 -1.71 16 26 C -0.14 -2.17 9.80 37.16 0.36 -1.80 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 34 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 35 H 0.09 1.97 6.71 -51.93 -0.35 1.62 16 36 H 0.11 2.08 5.72 -51.93 -0.30 1.79 16 37 H 0.06 1.19 7.17 -51.93 -0.37 0.82 16 38 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.59 7.62 -51.93 -0.40 1.19 16 41 H 0.08 1.30 7.27 -51.93 -0.38 0.92 16 42 H 0.06 0.73 6.59 -51.93 -0.34 0.39 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.74 6.96 -51.93 -0.36 0.38 16 45 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.63 7.64 -51.92 -0.40 1.23 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -27.74 394.90 -12.66 -40.40 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.35 Total: 8.37 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.50 Total: 9.64 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.57 Total: -55.83 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.43 kcal Atomic # 16 Polarization: -16.78 SS G_CDS: -3.17 Total: -19.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -27.74 -12.66 -40.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794620464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.556 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds