Wall clock time and date at job start Tue Mar 31 2020 15:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 C 1.52995 * 109.47336 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.47419 * 186.49461 * 4 3 2 6 6 C 1.46901 * 110.99922 * 168.00135 * 5 4 3 7 7 N 1.46504 * 109.46677 * 199.61099 * 6 5 4 8 8 N 1.40157 * 126.14595 * 82.48724 * 7 6 5 9 9 C 1.32238 * 107.76175 * 179.97438 * 8 7 6 10 10 C 1.40120 * 125.93278 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00402 * 179.97438 * 10 9 8 12 12 C 1.40040 * 119.99674 * 359.97438 * 10 9 8 13 13 N 1.30798 * 119.99812 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00193 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47263 * 89.99787 * 14 12 10 16 16 H 1.48499 * 109.47322 * 210.00487 * 14 12 10 17 17 H 1.48506 * 109.46806 * 330.00063 * 14 12 10 18 18 N 1.38508 * 108.14494 * 0.02562 * 9 8 7 19 19 C 1.46497 * 125.83405 * 179.97438 * 18 9 8 20 20 C 1.34730 * 108.32455 * 359.73610 * 18 9 8 21 21 S 1.71200 * 125.96727 * 180.26522 * 20 18 9 22 22 C 1.46893 * 111.00024 * 291.95623 * 5 4 3 23 23 H 1.08991 * 109.47283 * 207.85179 * 22 5 4 24 24 C 1.53004 * 109.47234 * 327.85141 * 22 5 4 25 25 C 1.52999 * 109.47224 * 87.84954 * 22 5 4 26 26 C 1.53005 * 109.47103 * 65.23213 * 25 22 5 27 27 H 1.08998 * 109.47011 * 59.99809 * 1 2 3 28 28 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46817 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.47552 * 240.00107 * 2 1 3 31 31 H 1.08999 * 109.47281 * 119.99722 * 2 1 3 32 32 H 1.09006 * 109.47199 * 59.99895 * 3 2 1 33 33 H 1.08998 * 109.47321 * 300.00001 * 3 2 1 34 34 H 1.08992 * 109.47416 * 66.49537 * 4 3 2 35 35 H 1.09005 * 109.47488 * 306.49428 * 4 3 2 36 36 H 1.09004 * 109.47353 * 319.60858 * 6 5 4 37 37 H 1.08997 * 109.47037 * 79.61135 * 6 5 4 38 38 H 0.97010 * 119.99966 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.46887 * 90.00430 * 19 18 9 40 40 H 1.09002 * 109.47008 * 209.99621 * 19 18 9 41 41 H 1.08997 * 109.47210 * 330.00057 * 19 18 9 42 42 H 1.09004 * 109.47162 * 66.06475 * 24 22 5 43 43 H 1.09001 * 109.47108 * 186.06553 * 24 22 5 44 44 H 1.08993 * 109.47285 * 306.06714 * 24 22 5 45 45 H 1.09002 * 109.47623 * 185.23498 * 25 22 5 46 46 H 1.09001 * 109.47436 * 305.23516 * 25 22 5 47 47 H 1.09000 * 109.47131 * 184.72843 * 26 25 22 48 48 H 1.09002 * 109.47185 * 304.72986 * 26 25 22 49 49 H 1.08999 * 109.46780 * 64.72802 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8187 0.1573 6 6 5.4997 2.8353 0.4467 7 7 5.8622 4.1215 1.0473 8 7 5.7255 4.4711 2.3977 9 6 6.1623 5.7112 2.5395 10 6 6.1972 6.4389 3.7364 11 1 6.5756 7.4504 3.7427 12 6 5.7413 5.8545 4.9246 13 7 5.2834 4.6293 4.9171 14 14 5.7884 6.8242 6.5205 15 1 4.5125 7.5655 6.6871 16 1 5.9717 5.8914 7.6613 17 1 6.9186 7.7867 6.4816 18 7 6.5783 6.1665 1.2993 19 6 7.1313 7.4927 1.0138 20 6 6.3923 5.1794 0.4014 21 16 6.7611 5.2565 -1.2686 22 6 3.7522 3.6253 -1.0312 23 1 4.4934 4.4178 -1.1342 24 6 3.7826 2.7340 -2.2744 25 6 2.3611 4.2444 -0.8815 26 6 2.3667 5.2358 0.2839 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 1.0326 -0.9414 35 1 3.9331 0.8314 0.8271 36 1 5.7403 2.0297 1.1405 37 1 6.0580 2.6964 -0.4790 38 1 4.9672 4.2246 5.7401 39 1 8.2147 7.4673 1.1303 40 1 6.8824 7.7778 -0.0084 41 1 6.7082 8.2197 1.7070 42 1 2.9711 2.0081 -2.2210 43 1 3.6615 3.3495 -3.1658 44 1 4.7367 2.2093 -2.3221 45 1 2.0945 4.7659 -1.8008 46 1 1.6324 3.4578 -0.6858 47 1 1.3570 5.6139 0.4442 48 1 2.7141 4.7333 1.1867 49 1 3.0331 6.0663 0.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794620465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:39 Heat of formation + Delta-G solvation = 73.248684 kcal Electronic energy + Delta-G solvation = -27619.785558 eV Core-core repulsion = 24130.582842 eV Total energy + Delta-G solvation = -3489.202716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88552 -38.91762 -35.03692 -34.28078 -33.90336 -32.51807 -30.75569 -29.23018 -28.99824 -27.02023 -26.55155 -24.33575 -23.86970 -22.45853 -21.45136 -20.89855 -20.77325 -19.20713 -17.74376 -16.71013 -16.31318 -15.71549 -15.71026 -14.95623 -14.85355 -14.68863 -14.42474 -13.82163 -13.61532 -13.42768 -13.27798 -13.24133 -12.76347 -12.31999 -12.22758 -12.11268 -12.03323 -11.79373 -11.65940 -11.50709 -11.24273 -11.18534 -11.11981 -11.00597 -10.94113 -10.65129 -10.62822 -10.54191 -10.50059 -10.24230 -10.07730 -9.67852 -9.49270 -9.14836 -8.83927 -7.98377 -7.01724 -6.79104 -6.65075 -5.10434 2.32826 2.57377 2.80044 2.92460 2.95902 3.36250 3.56467 3.66557 4.05046 4.30440 4.87442 4.91576 4.99152 5.12078 5.23800 5.26175 5.37085 5.49707 5.55433 5.60826 5.62822 5.68452 5.76820 5.78828 5.85126 5.85873 5.86574 5.93513 6.01963 6.05716 6.08790 6.10805 6.24178 6.27122 6.33980 6.37110 6.48578 6.51238 6.56679 6.59521 6.78320 6.82957 6.98857 7.02175 7.33341 7.43798 7.63741 7.82087 8.26030 8.38217 9.18449 9.95996 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004734 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.438363 B = 5913.761952 C = 7505.413966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.121 4.121 4 C 0.057 3.943 5 N -0.536 5.536 6 C 0.320 3.680 7 N -0.363 5.363 8 N -0.324 5.324 9 C 0.371 3.629 10 C -0.440 4.440 11 H 0.096 0.904 12 C 0.077 3.923 13 N -0.735 5.735 14 Si 0.926 3.074 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.260 1.260 18 N -0.513 5.513 19 C 0.100 3.900 20 C 0.464 3.536 21 S -0.718 6.718 22 C 0.058 3.942 23 H 0.114 0.886 24 C -0.170 4.170 25 C -0.117 4.117 26 C -0.139 4.139 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.285 0.715 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 -4.228 -3.129 7.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.071 4.071 5 N -0.261 5.261 6 C 0.108 3.892 7 N -0.148 5.148 8 N -0.155 5.155 9 C 0.122 3.878 10 C -0.481 4.481 11 H 0.114 0.886 12 C -0.149 4.149 13 N -0.359 5.359 14 Si 0.749 3.251 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.183 1.183 18 N -0.214 5.214 19 C -0.043 4.043 20 C 0.094 3.906 21 S -0.593 6.593 22 C -0.051 4.051 23 H 0.132 0.868 24 C -0.229 4.229 25 C -0.154 4.154 26 C -0.196 4.196 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.539 -5.074 -3.100 8.838 hybrid contribution 0.544 0.701 0.612 1.078 sum -5.995 -4.373 -2.488 7.826 Atomic orbital electron populations 1.21750 0.96029 1.01188 1.01825 1.21513 0.95725 0.97220 1.01723 1.21930 0.94724 0.96052 1.03150 1.22117 0.95738 0.88726 1.00501 1.61804 1.14205 1.11893 1.38168 1.21701 0.88590 0.81584 0.97359 1.49209 1.46751 1.11075 1.07808 1.79443 1.36243 1.12054 0.87772 1.21338 0.91747 0.89854 0.84863 1.18325 1.40680 1.00540 0.88602 0.88627 1.25802 0.93180 0.95106 1.00831 1.69883 1.24602 1.11708 1.29715 0.86002 0.79890 0.79815 0.79369 1.19109 1.19840 1.18347 1.45972 1.54184 1.13419 1.07806 1.21748 0.98735 0.80480 1.03359 1.22877 0.90115 0.84350 0.93300 1.92730 1.79726 1.93145 0.93694 1.22256 0.99365 0.96925 0.86524 0.86809 1.22344 1.01133 1.00320 0.99073 1.21803 0.96711 0.98848 0.98081 1.21593 0.99597 0.98652 0.99802 0.92924 0.93095 0.92689 0.92390 0.92076 0.90912 0.90866 0.93815 0.91148 0.88541 0.90212 0.90417 0.91556 0.89277 0.89787 0.92560 0.92489 0.92843 0.92995 0.91174 0.94323 0.90996 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.12 -1.48 3.63 -26.74 -0.10 -1.58 16 4 C 0.06 0.78 4.44 -3.82 -0.02 0.76 16 5 N -0.54 -9.13 3.89 -230.53 -0.90 -10.02 16 6 C 0.32 6.09 5.97 -63.31 -0.38 5.71 16 7 N -0.36 -8.23 3.71 -65.05 -0.24 -8.47 16 8 N -0.32 -8.15 10.77 31.21 0.34 -7.81 16 9 C 0.37 9.06 7.50 -155.27 -1.16 7.89 16 10 C -0.44 -10.23 8.98 -38.20 -0.34 -10.57 16 11 H 0.10 2.01 7.11 -52.49 -0.37 1.63 16 12 C 0.08 1.74 5.50 -17.32 -0.10 1.65 16 13 N -0.73 -17.73 11.90 55.55 0.66 -17.07 16 14 Si 0.93 16.66 29.56 -169.99 -5.02 11.64 16 15 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 16 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 17 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 18 N -0.51 -11.51 3.17 -124.66 -0.39 -11.91 16 19 C 0.10 1.78 10.64 59.85 0.64 2.42 16 20 C 0.46 10.76 7.17 -86.94 -0.62 10.14 16 21 S -0.72 -16.96 27.26 -107.50 -2.93 -19.89 16 22 C 0.06 0.98 2.11 -67.72 -0.14 0.84 16 23 H 0.11 2.35 4.47 -51.93 -0.23 2.11 16 24 C -0.17 -2.47 7.80 37.16 0.29 -2.18 16 25 C -0.12 -1.86 5.26 -26.73 -0.14 -2.00 16 26 C -0.14 -2.52 9.86 37.16 0.37 -2.16 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.03 8.11 -51.93 -0.42 0.60 16 33 H 0.07 0.90 4.24 -51.93 -0.22 0.68 16 34 H 0.04 0.56 5.69 -51.93 -0.30 0.26 16 35 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16 36 H 0.10 1.75 7.71 -51.93 -0.40 1.35 16 37 H 0.08 1.53 6.96 -51.93 -0.36 1.16 16 38 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.57 7.62 -51.93 -0.40 1.18 16 41 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 42 H 0.06 0.71 5.24 -51.93 -0.27 0.44 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.80 7.38 -51.93 -0.38 0.41 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 1.01 4.38 -51.93 -0.23 0.79 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -28.31 387.64 -12.27 -40.59 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.13 Total: 8.63 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.50 Total: 8.47 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.54 Total: -55.28 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.02 Total: 11.64 kcal Atomic # 16 Polarization: -16.96 SS G_CDS: -2.93 Total: -19.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.31 -12.27 -40.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794620465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.836 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds