Wall clock time and date at job start Tue Mar 31 2020 15:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 C 1.52995 * 109.47336 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.47419 * 186.49461 * 4 3 2 6 6 C 1.46901 * 110.99922 * 168.00135 * 5 4 3 7 7 N 1.46504 * 109.46677 * 199.61099 * 6 5 4 8 8 N 1.40157 * 126.14595 * 82.48724 * 7 6 5 9 9 C 1.32238 * 107.76175 * 179.97438 * 8 7 6 10 10 C 1.40120 * 125.93278 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00402 * 179.97438 * 10 9 8 12 12 C 1.40040 * 119.99674 * 359.97438 * 10 9 8 13 13 N 1.30798 * 119.99812 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00193 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47263 * 89.99787 * 14 12 10 16 16 H 1.48499 * 109.47322 * 210.00487 * 14 12 10 17 17 H 1.48506 * 109.46806 * 330.00063 * 14 12 10 18 18 N 1.38508 * 108.14494 * 0.02562 * 9 8 7 19 19 C 1.46497 * 125.83405 * 179.97438 * 18 9 8 20 20 C 1.34730 * 108.32455 * 359.73610 * 18 9 8 21 21 S 1.71200 * 125.96727 * 180.26522 * 20 18 9 22 22 C 1.46893 * 111.00024 * 291.95623 * 5 4 3 23 23 H 1.08991 * 109.47283 * 207.85179 * 22 5 4 24 24 C 1.53004 * 109.47234 * 327.85141 * 22 5 4 25 25 C 1.52999 * 109.47224 * 87.84954 * 22 5 4 26 26 C 1.53005 * 109.47103 * 65.23213 * 25 22 5 27 27 H 1.08998 * 109.47011 * 59.99809 * 1 2 3 28 28 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46817 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.47552 * 240.00107 * 2 1 3 31 31 H 1.08999 * 109.47281 * 119.99722 * 2 1 3 32 32 H 1.09006 * 109.47199 * 59.99895 * 3 2 1 33 33 H 1.08998 * 109.47321 * 300.00001 * 3 2 1 34 34 H 1.08992 * 109.47416 * 66.49537 * 4 3 2 35 35 H 1.09005 * 109.47488 * 306.49428 * 4 3 2 36 36 H 1.09004 * 109.47353 * 319.60858 * 6 5 4 37 37 H 1.08997 * 109.47037 * 79.61135 * 6 5 4 38 38 H 0.97010 * 119.99966 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.46887 * 90.00430 * 19 18 9 40 40 H 1.09002 * 109.47008 * 209.99621 * 19 18 9 41 41 H 1.08997 * 109.47210 * 330.00057 * 19 18 9 42 42 H 1.09004 * 109.47162 * 66.06475 * 24 22 5 43 43 H 1.09001 * 109.47108 * 186.06553 * 24 22 5 44 44 H 1.08993 * 109.47285 * 306.06714 * 24 22 5 45 45 H 1.09002 * 109.47623 * 185.23498 * 25 22 5 46 46 H 1.09001 * 109.47436 * 305.23516 * 25 22 5 47 47 H 1.09000 * 109.47131 * 184.72843 * 26 25 22 48 48 H 1.09002 * 109.47185 * 304.72986 * 26 25 22 49 49 H 1.08999 * 109.46780 * 64.72802 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8187 0.1573 6 6 5.4997 2.8353 0.4467 7 7 5.8622 4.1215 1.0473 8 7 5.7255 4.4711 2.3977 9 6 6.1623 5.7112 2.5395 10 6 6.1972 6.4389 3.7364 11 1 6.5756 7.4504 3.7427 12 6 5.7413 5.8545 4.9246 13 7 5.2834 4.6293 4.9171 14 14 5.7884 6.8242 6.5205 15 1 4.5125 7.5655 6.6871 16 1 5.9717 5.8914 7.6613 17 1 6.9186 7.7867 6.4816 18 7 6.5783 6.1665 1.2993 19 6 7.1313 7.4927 1.0138 20 6 6.3923 5.1794 0.4014 21 16 6.7611 5.2565 -1.2686 22 6 3.7522 3.6253 -1.0312 23 1 4.4934 4.4178 -1.1342 24 6 3.7826 2.7340 -2.2744 25 6 2.3611 4.2444 -0.8815 26 6 2.3667 5.2358 0.2839 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 1.0326 -0.9414 35 1 3.9331 0.8314 0.8271 36 1 5.7403 2.0297 1.1405 37 1 6.0580 2.6964 -0.4790 38 1 4.9672 4.2246 5.7401 39 1 8.2147 7.4673 1.1303 40 1 6.8824 7.7778 -0.0084 41 1 6.7082 8.2197 1.7070 42 1 2.9711 2.0081 -2.2210 43 1 3.6615 3.3495 -3.1658 44 1 4.7367 2.2093 -2.3221 45 1 2.0945 4.7659 -1.8008 46 1 1.6324 3.4578 -0.6858 47 1 1.3570 5.6139 0.4442 48 1 2.7141 4.7333 1.1867 49 1 3.0331 6.0663 0.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794620465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:38 Heat of formation + Delta-G solvation = 60.625531 kcal Electronic energy + Delta-G solvation = -27620.332939 eV Core-core repulsion = 24130.582842 eV Total energy + Delta-G solvation = -3489.750097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62367 -40.22321 -36.42864 -35.68814 -35.42837 -33.93924 -32.41256 -30.62276 -30.18210 -28.46328 -28.25360 -25.84277 -25.10732 -23.67117 -23.10282 -22.62695 -21.78935 -20.53070 -19.46586 -18.32055 -17.73611 -17.40807 -17.11221 -16.49613 -16.36191 -16.14636 -15.66811 -15.16218 -14.99470 -14.68579 -14.56752 -14.37686 -13.96664 -13.75818 -13.63084 -13.45662 -13.43309 -13.18754 -13.02141 -12.89732 -12.73305 -12.51521 -12.44651 -12.22881 -12.13474 -12.05509 -11.99056 -11.84797 -11.67724 -11.60986 -11.49198 -11.30234 -10.93096 -10.78845 -10.59027 -9.32012 -8.75757 -8.61456 -8.47258 -6.92531 0.56903 0.82470 1.30482 1.44861 1.59769 1.68940 1.88668 2.13833 2.43610 2.90140 3.12772 3.60603 3.87372 3.96135 4.06304 4.09705 4.14957 4.18580 4.29082 4.36612 4.44220 4.47482 4.54123 4.54894 4.62396 4.67475 4.69234 4.71987 4.79778 4.90031 4.92325 4.99004 5.02743 5.03829 5.07571 5.12060 5.18079 5.23923 5.28622 5.29699 5.40416 5.45412 5.46469 5.58893 5.80879 5.97792 6.07264 6.29749 6.51741 6.60754 7.38455 8.27721 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004734 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.438363 B = 5913.761952 C = 7505.413966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.056 3.944 5 N -0.544 5.544 6 C 0.317 3.683 7 N -0.360 5.360 8 N -0.355 5.355 9 C 0.352 3.648 10 C -0.456 4.456 11 H 0.115 0.885 12 C 0.037 3.963 13 N -0.774 5.774 14 Si 1.002 2.998 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.247 1.247 18 N -0.517 5.517 19 C 0.095 3.905 20 C 0.454 3.546 21 S -0.737 6.737 22 C 0.058 3.942 23 H 0.079 0.921 24 C -0.161 4.161 25 C -0.111 4.111 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.290 0.710 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.037 0.963 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -4.278 -2.848 8.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.150 4.150 4 C -0.071 4.071 5 N -0.269 5.269 6 C 0.105 3.895 7 N -0.145 5.145 8 N -0.187 5.187 9 C 0.103 3.897 10 C -0.498 4.498 11 H 0.133 0.867 12 C -0.186 4.186 13 N -0.399 5.399 14 Si 0.822 3.178 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.170 1.170 18 N -0.217 5.217 19 C -0.046 4.046 20 C 0.082 3.918 21 S -0.613 6.613 22 C -0.051 4.051 23 H 0.097 0.903 24 C -0.219 4.219 25 C -0.148 4.148 26 C -0.184 4.184 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.472 -5.130 -2.849 9.501 hybrid contribution 0.819 0.696 0.532 1.199 sum -6.654 -4.433 -2.317 8.324 Atomic orbital electron populations 1.21744 0.95228 1.02020 1.01727 1.21477 0.96365 0.95539 1.02313 1.21834 0.93389 0.97522 1.02215 1.22260 0.96715 0.86873 1.01286 1.61816 1.12650 1.13856 1.38598 1.21828 0.90062 0.80502 0.97068 1.49503 1.46118 1.11766 1.07157 1.79345 1.37205 1.13077 0.89072 1.21693 0.92080 0.90127 0.85792 1.18866 1.40747 1.01451 0.88688 0.86675 1.26819 0.91947 0.95798 1.04006 1.69984 1.25330 1.13540 1.31003 0.84871 0.80183 0.78288 0.74503 1.18767 1.19641 1.17041 1.46245 1.53921 1.14464 1.07083 1.22003 0.99639 0.79099 1.03883 1.22897 0.90695 0.84921 0.93250 1.92615 1.80623 1.93478 0.94559 1.22146 0.98761 0.96576 0.87590 0.90322 1.22251 1.01708 1.00250 0.97689 1.21797 0.96676 0.98809 0.97538 1.21447 0.99762 0.97943 0.99202 0.92421 0.91836 0.93418 0.91064 0.92243 0.93026 0.90471 0.92259 0.91153 0.88161 0.90527 0.89909 0.90102 0.89352 0.87727 0.90216 0.92340 0.93439 0.91713 0.89253 0.92357 0.94396 0.96803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.12 -2.16 5.93 30.59 0.18 -1.98 16 3 C -0.11 -2.58 3.63 30.59 0.11 -2.47 16 4 C 0.06 1.47 4.44 86.30 0.38 1.85 16 5 N -0.54 -18.69 3.89 -883.27 -3.44 -22.13 16 6 C 0.32 12.39 5.97 170.80 1.02 13.41 16 7 N -0.36 -16.82 3.71 -359.71 -1.33 -18.15 16 8 N -0.35 -18.39 10.77 -55.16 -0.59 -18.98 16 9 C 0.35 17.47 7.50 133.52 1.00 18.47 16 10 C -0.46 -21.12 8.98 23.16 0.21 -20.91 16 11 H 0.12 4.68 7.11 -2.91 -0.02 4.66 16 12 C 0.04 1.67 5.50 85.28 0.47 2.14 16 13 N -0.77 -37.79 11.90 21.84 0.26 -37.53 16 14 Si 1.00 33.18 29.56 68.60 2.03 35.21 16 15 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 16 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 17 H -0.25 -7.64 7.11 99.48 0.71 -6.93 16 18 N -0.52 -23.53 3.17 -548.31 -1.74 -25.27 16 19 C 0.10 3.37 10.64 127.77 1.36 4.73 16 20 C 0.45 21.59 7.17 179.06 1.28 22.88 16 21 S -0.74 -35.42 27.26 -56.49 -1.54 -36.96 16 22 C 0.06 1.96 2.11 44.92 0.09 2.05 16 23 H 0.08 3.30 4.47 -2.39 -0.01 3.29 16 24 C -0.16 -4.44 7.80 71.98 0.56 -3.88 16 25 C -0.11 -3.44 5.26 30.60 0.16 -3.28 16 26 C -0.13 -4.65 9.86 71.98 0.71 -3.94 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.42 8.11 -2.38 -0.02 1.40 16 33 H 0.08 1.71 4.24 -2.39 -0.01 1.70 16 34 H 0.06 1.40 5.69 -2.39 -0.01 1.39 16 35 H 0.07 1.86 7.78 -2.38 -0.02 1.84 16 36 H 0.10 3.75 7.71 -2.38 -0.02 3.73 16 37 H 0.08 3.01 6.96 -2.39 -0.02 3.00 16 38 H 0.29 12.88 8.30 -92.70 -0.77 12.11 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.09 3.12 7.62 -2.39 -0.02 3.11 16 41 H 0.10 3.21 7.32 -2.39 -0.02 3.19 16 42 H 0.08 1.80 5.24 -2.39 -0.01 1.79 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.36 7.38 -2.39 -0.02 1.34 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.09 2.43 4.38 -2.39 -0.01 2.42 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.04 1.64 7.63 -2.39 -0.02 1.62 16 49 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -62.51 387.64 2.84 -59.66 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.93 Total: 36.83 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 8.26 Total: 27.33 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.84 Total: -122.07 kcal Atomic # 14 Polarization: 33.18 SS G_CDS: 2.03 Total: 35.21 kcal Atomic # 16 Polarization: -35.42 SS G_CDS: -1.54 Total: -36.96 kcal Total: -62.51 2.84 -59.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794620465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.290 kcal (2) G-P(sol) polarization free energy of solvation -62.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds