Wall clock time and date at job start Tue Mar 31 2020 15:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47244 * 2 1 4 4 C 1.52996 * 109.47244 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47291 * 181.90411 * 4 3 2 6 6 C 1.46895 * 111.00296 * 297.88357 * 5 4 3 7 7 C 1.52999 * 109.46967 * 288.33588 * 6 5 4 8 8 C 1.53008 * 109.46892 * 180.13893 * 7 6 5 9 9 C 1.53001 * 109.46912 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99784 * 61.83697 * 5 4 3 11 11 N 1.46502 * 109.47286 * 66.04482 * 10 5 4 12 12 N 1.40166 * 126.14862 * 269.95873 * 11 10 5 13 13 C 1.32237 * 107.75994 * 179.75957 * 12 11 10 14 14 C 1.40116 * 125.92820 * 180.29568 * 13 12 11 15 15 H 1.07999 * 120.00181 * 180.16324 * 14 13 12 16 16 C 1.40038 * 120.00172 * 0.16188 * 14 13 12 17 17 N 1.30800 * 119.99734 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00245 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47018 * 90.00127 * 18 16 14 20 20 H 1.48501 * 109.46833 * 209.99970 * 18 16 14 21 21 H 1.48497 * 109.47047 * 329.99615 * 18 16 14 22 22 N 1.38496 * 108.14794 * 0.43153 * 13 12 11 23 23 C 1.46501 * 125.83724 * 179.82353 * 22 13 12 24 24 C 1.34729 * 108.32754 * 359.56349 * 22 13 12 25 25 S 1.71206 * 125.97221 * 180.26042 * 24 22 13 26 26 H 1.08996 * 109.47062 * 299.99903 * 1 2 3 27 27 H 1.08998 * 109.47240 * 60.00122 * 1 2 3 28 28 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47095 * 240.00073 * 2 1 3 30 30 H 1.08996 * 109.47508 * 120.00334 * 2 1 3 31 31 H 1.08996 * 109.47012 * 60.00066 * 3 2 1 32 32 H 1.08998 * 109.46903 * 300.00085 * 3 2 1 33 33 H 1.09002 * 109.47205 * 61.90779 * 4 3 2 34 34 H 1.09001 * 109.47219 * 301.90777 * 4 3 2 35 35 H 1.09009 * 109.47005 * 48.33389 * 6 5 4 36 36 H 1.09002 * 109.47373 * 168.33082 * 6 5 4 37 37 H 1.08999 * 109.47202 * 300.13527 * 7 6 5 38 38 H 1.09000 * 109.47603 * 60.13788 * 7 6 5 39 39 H 1.08999 * 109.46898 * 299.99820 * 8 7 6 40 40 H 1.09007 * 109.47008 * 59.99932 * 8 7 6 41 41 H 1.08997 * 109.47127 * 179.97438 * 9 8 7 42 42 H 1.09004 * 109.47382 * 300.00297 * 9 8 7 43 43 H 1.09007 * 109.47023 * 60.00329 * 9 8 7 44 44 H 1.09001 * 109.46998 * 306.04835 * 10 5 4 45 45 H 1.08993 * 109.47419 * 186.04693 * 10 5 4 46 46 H 0.96997 * 120.00095 * 180.02562 * 17 16 14 47 47 H 1.09009 * 109.46809 * 269.71718 * 23 22 13 48 48 H 1.09001 * 109.47132 * 149.72611 * 23 22 13 49 49 H 1.08999 * 109.47212 * 29.71518 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8268 0.0467 6 6 3.6310 3.5766 -1.1415 7 6 4.4107 3.0858 -2.3630 8 6 3.9666 3.8693 -3.6000 9 6 4.7468 3.3789 -4.8214 10 6 3.6243 3.4984 1.2784 11 7 4.2645 2.8637 2.4332 12 7 3.7566 1.7857 3.1712 13 6 4.6277 1.5039 4.1253 14 6 4.5009 0.4861 5.0799 15 1 5.2731 0.3417 5.8211 16 6 3.3730 -0.3439 5.0730 17 7 2.4381 -0.1693 4.1751 18 14 3.2037 -1.7003 6.3462 19 1 2.4999 -1.1715 7.5421 20 1 2.4240 -2.8252 5.7701 21 1 4.5524 -2.1824 6.7382 22 7 5.6857 2.3912 4.0192 23 6 6.8653 2.4274 4.8874 24 6 5.4476 3.2119 2.9776 25 16 6.4690 4.4761 2.4393 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9585 -0.9057 34 1 3.9329 0.8995 0.8733 35 1 2.5645 3.4206 -1.3044 36 1 3.8238 4.6387 -0.9900 37 1 5.4772 3.2395 -2.1991 38 1 4.2159 2.0243 -2.5160 39 1 2.9001 3.7156 -3.7639 40 1 4.1615 4.9308 -3.4470 41 1 4.4301 3.9367 -5.7027 42 1 5.8133 3.5329 -4.6572 43 1 4.5522 2.3173 -4.9746 44 1 2.5415 3.4173 1.3733 45 1 3.9078 4.5501 1.2385 46 1 1.6567 -0.7439 4.1705 47 1 6.6759 3.0923 5.7301 48 1 7.7219 2.7932 4.3214 49 1 7.0755 1.4236 5.2567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794620472.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:16 Heat of formation + Delta-G solvation = 58.468403 kcal Electronic energy + Delta-G solvation = -27043.469710 eV Core-core repulsion = 23553.626072 eV Total energy + Delta-G solvation = -3489.843637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84726 -38.39407 -35.09666 -34.57527 -33.95973 -33.24699 -30.76672 -29.21288 -28.57523 -26.81470 -26.53082 -24.56728 -23.75229 -21.98008 -21.36002 -20.95438 -20.81912 -19.56969 -17.70751 -16.62898 -16.13387 -15.69823 -15.64415 -15.23527 -14.86017 -14.74033 -14.57450 -14.27465 -13.76577 -13.49805 -13.40844 -13.04903 -12.65101 -12.49088 -12.26686 -12.22854 -12.10661 -11.81077 -11.62170 -11.50559 -11.32013 -11.11444 -11.06926 -10.98577 -10.91660 -10.75050 -10.61215 -10.59725 -10.47512 -10.46442 -10.09611 -9.89801 -9.51725 -9.18452 -8.86701 -7.92193 -7.05593 -6.70408 -6.60368 -5.13518 2.38015 2.65611 2.76730 2.90078 2.93065 3.43096 3.53327 3.64110 4.08120 4.34933 4.84074 4.92448 5.00481 5.13921 5.17969 5.20621 5.30694 5.40274 5.43343 5.53786 5.59293 5.63434 5.69886 5.73421 5.84567 5.85662 5.87842 5.92522 5.97985 5.99960 6.10432 6.11360 6.12189 6.17543 6.29091 6.33367 6.38221 6.45225 6.55338 6.58618 6.66597 6.75912 6.80852 7.03540 7.27456 7.29993 7.64889 7.82444 8.24627 8.35753 9.17095 9.91220 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.004693 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.356253 B = 5965.317452 C = 8177.631448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.055 3.945 5 N -0.543 5.543 6 C 0.059 3.941 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.151 4.151 10 C 0.324 3.676 11 N -0.376 5.376 12 N -0.339 5.339 13 C 0.375 3.625 14 C -0.438 4.438 15 H 0.096 0.904 16 C 0.078 3.922 17 N -0.735 5.735 18 Si 0.925 3.075 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.260 1.260 22 N -0.518 5.518 23 C 0.101 3.899 24 C 0.480 3.520 25 S -0.709 6.709 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.284 0.716 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -1.414 -7.304 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.186 4.186 4 C -0.072 4.072 5 N -0.267 5.267 6 C -0.069 4.069 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.208 4.208 10 C 0.112 3.888 11 N -0.161 5.161 12 N -0.171 5.171 13 C 0.125 3.875 14 C -0.479 4.479 15 H 0.114 0.886 16 C -0.148 4.148 17 N -0.359 5.359 18 Si 0.749 3.251 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.183 1.183 22 N -0.219 5.219 23 C -0.042 4.042 24 C 0.111 3.889 25 S -0.585 6.585 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.534 -0.961 -8.196 8.977 hybrid contribution -0.822 -1.122 1.209 1.843 sum -4.356 -2.083 -6.987 8.493 Atomic orbital electron populations 1.21718 0.96476 1.00945 1.01219 1.21345 0.95251 0.96714 1.01964 1.22113 0.97624 0.97642 1.01263 1.22252 0.92571 0.89460 1.02965 1.62014 1.60430 1.02941 1.01275 1.22045 0.97247 0.98080 0.89516 1.21558 1.01143 0.99600 0.92696 1.21485 0.99716 1.00123 0.94715 1.21752 1.00542 1.00967 0.97535 1.21720 0.94232 0.94814 0.78028 1.49102 1.14657 1.27709 1.24670 1.79331 1.19583 1.06721 1.11444 1.21270 0.81320 0.90146 0.94753 1.18333 1.06569 1.10896 1.12126 0.88630 1.25790 0.94407 0.98162 0.96476 1.69870 1.05870 1.32502 1.27686 0.86005 0.79725 0.79324 0.80060 1.19163 1.19852 1.18344 1.45966 1.20787 1.28434 1.26701 1.21737 0.86095 1.03008 0.93388 1.22853 0.88774 0.91495 0.85799 1.92697 1.54463 1.31365 1.79978 0.92658 0.93647 0.93314 0.93138 0.90828 0.91227 0.92986 0.91634 0.89241 0.94266 0.90778 0.90959 0.92182 0.92408 0.91971 0.93078 0.92635 0.92941 0.91549 0.87592 0.90517 0.91606 0.89240 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.11 -1.70 5.93 -26.73 -0.16 -1.85 16 3 C -0.15 -2.28 4.58 -26.73 -0.12 -2.40 16 4 C 0.06 0.95 5.08 -3.83 -0.02 0.93 16 5 N -0.54 -9.46 4.81 -238.54 -1.15 -10.61 16 6 C 0.06 0.82 4.83 -3.83 -0.02 0.81 16 7 C -0.11 -1.42 5.25 -26.73 -0.14 -1.56 16 8 C -0.12 -1.27 5.93 -26.73 -0.16 -1.42 16 9 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 10 C 0.32 6.22 5.70 -63.31 -0.36 5.86 16 11 N -0.38 -8.54 3.34 -65.05 -0.22 -8.76 16 12 N -0.34 -8.24 9.76 31.21 0.30 -7.93 16 13 C 0.37 9.01 7.50 -155.28 -1.16 7.85 16 14 C -0.44 -9.97 8.98 -38.20 -0.34 -10.32 16 15 H 0.10 1.98 7.11 -52.49 -0.37 1.61 16 16 C 0.08 1.71 5.50 -17.32 -0.10 1.61 16 17 N -0.73 -16.87 11.90 55.55 0.66 -16.21 16 18 Si 0.93 16.31 29.56 -169.99 -5.03 11.29 16 19 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 20 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 22 N -0.52 -11.73 3.17 -124.65 -0.39 -12.12 16 23 C 0.10 1.82 10.65 59.85 0.64 2.46 16 24 C 0.48 11.46 7.84 -86.93 -0.68 10.78 16 25 S -0.71 -17.71 29.50 -107.50 -3.17 -20.88 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.23 6.22 -51.93 -0.32 0.91 16 32 H 0.05 0.72 6.31 -51.93 -0.33 0.39 16 33 H 0.07 1.06 6.62 -51.93 -0.34 0.71 16 34 H 0.09 1.92 6.75 -51.93 -0.35 1.57 16 35 H 0.04 0.51 5.89 -51.92 -0.31 0.20 16 36 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.77 6.72 -51.93 -0.35 0.42 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 44 H 0.07 1.23 6.02 -51.93 -0.31 0.91 16 45 H 0.11 2.05 7.37 -51.93 -0.38 1.67 16 46 H 0.28 5.95 8.30 -40.82 -0.34 5.62 16 47 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 48 H 0.09 1.61 7.61 -51.93 -0.40 1.22 16 49 H 0.08 1.32 7.31 -51.93 -0.38 0.94 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -28.20 398.67 -13.33 -41.52 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.46 Total: 7.54 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -1.89 Total: 10.14 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.79 Total: -55.63 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.29 kcal Atomic # 16 Polarization: -17.71 SS G_CDS: -3.17 Total: -20.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.20 -13.33 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794620472.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.993 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds