Wall clock time and date at job start Tue Mar 31 2020 15:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47244 * 2 1 4 4 C 1.52996 * 109.47244 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47291 * 181.90411 * 4 3 2 6 6 C 1.46895 * 111.00296 * 297.88357 * 5 4 3 7 7 C 1.52999 * 109.46967 * 288.33588 * 6 5 4 8 8 C 1.53008 * 109.46892 * 180.13893 * 7 6 5 9 9 C 1.53001 * 109.46912 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99784 * 61.83697 * 5 4 3 11 11 N 1.46502 * 109.47286 * 66.04482 * 10 5 4 12 12 N 1.40166 * 126.14862 * 269.95873 * 11 10 5 13 13 C 1.32237 * 107.75994 * 179.75957 * 12 11 10 14 14 C 1.40116 * 125.92820 * 180.29568 * 13 12 11 15 15 H 1.07999 * 120.00181 * 180.16324 * 14 13 12 16 16 C 1.40038 * 120.00172 * 0.16188 * 14 13 12 17 17 N 1.30800 * 119.99734 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00245 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47018 * 90.00127 * 18 16 14 20 20 H 1.48501 * 109.46833 * 209.99970 * 18 16 14 21 21 H 1.48497 * 109.47047 * 329.99615 * 18 16 14 22 22 N 1.38496 * 108.14794 * 0.43153 * 13 12 11 23 23 C 1.46501 * 125.83724 * 179.82353 * 22 13 12 24 24 C 1.34729 * 108.32754 * 359.56349 * 22 13 12 25 25 S 1.71206 * 125.97221 * 180.26042 * 24 22 13 26 26 H 1.08996 * 109.47062 * 299.99903 * 1 2 3 27 27 H 1.08998 * 109.47240 * 60.00122 * 1 2 3 28 28 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47095 * 240.00073 * 2 1 3 30 30 H 1.08996 * 109.47508 * 120.00334 * 2 1 3 31 31 H 1.08996 * 109.47012 * 60.00066 * 3 2 1 32 32 H 1.08998 * 109.46903 * 300.00085 * 3 2 1 33 33 H 1.09002 * 109.47205 * 61.90779 * 4 3 2 34 34 H 1.09001 * 109.47219 * 301.90777 * 4 3 2 35 35 H 1.09009 * 109.47005 * 48.33389 * 6 5 4 36 36 H 1.09002 * 109.47373 * 168.33082 * 6 5 4 37 37 H 1.08999 * 109.47202 * 300.13527 * 7 6 5 38 38 H 1.09000 * 109.47603 * 60.13788 * 7 6 5 39 39 H 1.08999 * 109.46898 * 299.99820 * 8 7 6 40 40 H 1.09007 * 109.47008 * 59.99932 * 8 7 6 41 41 H 1.08997 * 109.47127 * 179.97438 * 9 8 7 42 42 H 1.09004 * 109.47382 * 300.00297 * 9 8 7 43 43 H 1.09007 * 109.47023 * 60.00329 * 9 8 7 44 44 H 1.09001 * 109.46998 * 306.04835 * 10 5 4 45 45 H 1.08993 * 109.47419 * 186.04693 * 10 5 4 46 46 H 0.96997 * 120.00095 * 180.02562 * 17 16 14 47 47 H 1.09009 * 109.46809 * 269.71718 * 23 22 13 48 48 H 1.09001 * 109.47132 * 149.72611 * 23 22 13 49 49 H 1.08999 * 109.47212 * 29.71518 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8268 0.0467 6 6 3.6310 3.5766 -1.1415 7 6 4.4107 3.0858 -2.3630 8 6 3.9666 3.8693 -3.6000 9 6 4.7468 3.3789 -4.8214 10 6 3.6243 3.4984 1.2784 11 7 4.2645 2.8637 2.4332 12 7 3.7566 1.7857 3.1712 13 6 4.6277 1.5039 4.1253 14 6 4.5009 0.4861 5.0799 15 1 5.2731 0.3417 5.8211 16 6 3.3730 -0.3439 5.0730 17 7 2.4381 -0.1693 4.1751 18 14 3.2037 -1.7003 6.3462 19 1 2.4999 -1.1715 7.5421 20 1 2.4240 -2.8252 5.7701 21 1 4.5524 -2.1824 6.7382 22 7 5.6857 2.3912 4.0192 23 6 6.8653 2.4274 4.8874 24 6 5.4476 3.2119 2.9776 25 16 6.4690 4.4761 2.4393 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9585 -0.9057 34 1 3.9329 0.8995 0.8733 35 1 2.5645 3.4206 -1.3044 36 1 3.8238 4.6387 -0.9900 37 1 5.4772 3.2395 -2.1991 38 1 4.2159 2.0243 -2.5160 39 1 2.9001 3.7156 -3.7639 40 1 4.1615 4.9308 -3.4470 41 1 4.4301 3.9367 -5.7027 42 1 5.8133 3.5329 -4.6572 43 1 4.5522 2.3173 -4.9746 44 1 2.5415 3.4173 1.3733 45 1 3.9078 4.5501 1.2385 46 1 1.6567 -0.7439 4.1705 47 1 6.6759 3.0923 5.7301 48 1 7.7219 2.7932 4.3214 49 1 7.0755 1.4236 5.2567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794620472.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:15 Heat of formation + Delta-G solvation = 46.259408 kcal Electronic energy + Delta-G solvation = -27043.999131 eV Core-core repulsion = 23553.626072 eV Total energy + Delta-G solvation = -3490.373059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61240 -39.75484 -36.32981 -35.96792 -35.60931 -34.55371 -32.46418 -30.33453 -30.05549 -28.24209 -28.17635 -26.05634 -24.94380 -23.47419 -22.70024 -22.49037 -22.06211 -20.88710 -19.42605 -18.33002 -17.58220 -17.39960 -16.98047 -16.70664 -16.39348 -16.13117 -15.90202 -15.59944 -15.18529 -14.81814 -14.45345 -14.16936 -13.94492 -13.77215 -13.65824 -13.45962 -13.43557 -13.32184 -13.04242 -12.90866 -12.66208 -12.48075 -12.41167 -12.18491 -12.10292 -12.01855 -11.95056 -11.87290 -11.74614 -11.65378 -11.50738 -11.32867 -11.18109 -10.86703 -10.62265 -9.29391 -8.78201 -8.61465 -8.52746 -6.92568 0.56791 0.86405 1.29444 1.45109 1.58973 1.69722 1.87404 2.13761 2.44705 2.91381 3.12201 3.57843 3.83892 3.95025 4.01787 4.05786 4.11151 4.12352 4.25943 4.30284 4.39778 4.41654 4.45678 4.52388 4.59227 4.70663 4.72172 4.75434 4.80227 4.89451 4.91291 4.96261 4.97847 5.00859 5.11416 5.11770 5.15393 5.23857 5.29243 5.32647 5.39524 5.41998 5.45011 5.52315 5.74643 5.87708 6.01103 6.24795 6.51272 6.60508 7.36656 8.26340 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.004693 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.356253 B = 5965.317452 C = 8177.631448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.067 3.933 5 N -0.555 5.555 6 C 0.060 3.940 7 C -0.105 4.105 8 C -0.117 4.117 9 C -0.150 4.150 10 C 0.323 3.677 11 N -0.370 5.370 12 N -0.357 5.357 13 C 0.351 3.649 14 C -0.452 4.452 15 H 0.114 0.886 16 C 0.039 3.961 17 N -0.765 5.765 18 Si 1.000 3.000 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.250 1.250 22 N -0.518 5.518 23 C 0.096 3.904 24 C 0.465 3.535 25 S -0.743 6.743 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.290 0.710 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -2.493 -7.761 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.172 4.172 4 C -0.061 4.061 5 N -0.279 5.279 6 C -0.067 4.067 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.207 4.207 10 C 0.112 3.888 11 N -0.156 5.156 12 N -0.190 5.190 13 C 0.103 3.897 14 C -0.493 4.493 15 H 0.132 0.868 16 C -0.185 4.185 17 N -0.389 5.389 18 Si 0.820 3.180 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.173 1.173 22 N -0.219 5.219 23 C -0.045 4.045 24 C 0.094 3.906 25 S -0.620 6.620 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.453 -2.026 -8.669 9.954 hybrid contribution -0.565 -0.817 1.334 1.663 sum -5.018 -2.843 -7.335 9.330 Atomic orbital electron populations 1.21665 0.94827 1.01807 1.01476 1.21290 0.96652 0.95905 1.01029 1.21971 0.96099 0.98130 1.01044 1.22057 0.93733 0.88998 1.01324 1.62001 1.61023 1.03266 1.01639 1.22169 0.98389 0.97730 0.88386 1.21498 0.99649 0.99951 0.93168 1.21450 1.00536 0.99787 0.93718 1.21747 1.00035 1.01319 0.97640 1.21834 0.94289 0.94515 0.78174 1.49445 1.14194 1.26976 1.24949 1.79290 1.20335 1.07300 1.12052 1.21691 0.81845 0.90901 0.95281 1.18845 1.07587 1.10709 1.12204 0.86778 1.26748 0.93554 1.00020 0.98150 1.69957 1.06433 1.33483 1.29071 0.84896 0.79983 0.76019 0.77133 1.18820 1.19691 1.17308 1.46234 1.21474 1.27606 1.26614 1.22000 0.84561 1.04816 0.93163 1.22805 0.89197 0.91898 0.86741 1.92613 1.55487 1.32912 1.80979 0.94076 0.91634 0.92212 0.91494 0.94283 0.93795 0.90502 0.90352 0.93758 0.92533 0.90675 0.93069 0.92227 0.91116 0.91781 0.91637 0.93301 0.92747 0.91026 0.87955 0.89959 0.90071 0.89499 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.75 16 2 C -0.11 -3.22 5.93 30.59 0.18 -3.03 16 3 C -0.13 -4.07 4.58 30.59 0.14 -3.93 16 4 C 0.07 2.33 5.08 86.30 0.44 2.77 16 5 N -0.55 -19.57 4.81 -908.59 -4.37 -23.94 16 6 C 0.06 1.62 4.83 86.30 0.42 2.04 16 7 C -0.10 -2.53 5.25 30.60 0.16 -2.37 16 8 C -0.12 -2.18 5.93 30.60 0.18 -2.00 16 9 C -0.15 -2.55 9.91 71.98 0.71 -1.84 16 10 C 0.32 12.72 5.70 170.81 0.97 13.69 16 11 N -0.37 -17.35 3.34 -359.72 -1.20 -18.55 16 12 N -0.36 -17.87 9.76 -55.17 -0.54 -18.40 16 13 C 0.35 17.15 7.50 133.52 1.00 18.15 16 14 C -0.45 -20.43 8.98 23.16 0.21 -20.22 16 15 H 0.11 4.56 7.11 -2.91 -0.02 4.54 16 16 C 0.04 1.68 5.50 85.28 0.47 2.15 16 17 N -0.77 -35.50 11.90 21.84 0.26 -35.24 16 18 Si 1.00 32.35 29.56 68.60 2.03 34.38 16 19 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 20 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 21 H -0.25 -7.64 7.11 99.48 0.71 -6.94 16 22 N -0.52 -23.77 3.17 -548.29 -1.74 -25.51 16 23 C 0.10 3.43 10.65 127.77 1.36 4.79 16 24 C 0.46 22.73 7.84 179.06 1.40 24.14 16 25 S -0.74 -37.84 29.50 -56.49 -1.67 -39.50 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.57 6.22 -2.39 -0.01 1.56 16 32 H 0.08 1.96 6.31 -2.39 -0.02 1.94 16 33 H 0.08 2.50 6.62 -2.39 -0.02 2.48 16 34 H 0.04 1.97 6.75 -2.39 -0.02 1.95 16 35 H 0.06 1.34 5.89 -2.38 -0.01 1.33 16 36 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.44 6.72 -2.39 -0.02 1.43 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.07 2.72 6.02 -2.39 -0.01 2.70 16 45 H 0.10 4.07 7.37 -2.39 -0.02 4.05 16 46 H 0.29 12.26 8.30 -92.71 -0.77 11.49 16 47 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 48 H 0.09 3.14 7.61 -2.39 -0.02 3.12 16 49 H 0.11 3.23 7.31 -2.39 -0.02 3.21 16 Total: -1.00 -62.16 398.67 2.06 -60.10 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.92 Total: 35.09 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 8.36 Total: 31.57 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -7.58 Total: -121.65 kcal Atomic # 14 Polarization: 32.35 SS G_CDS: 2.03 Total: 34.38 kcal Atomic # 16 Polarization: -37.84 SS G_CDS: -1.67 Total: -39.50 kcal Total: -62.16 2.06 -60.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794620472.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.364 kcal (2) G-P(sol) polarization free energy of solvation -62.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds