Wall clock time and date at job start Tue Mar 31 2020 14:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47418 * 270.00128 * 3 2 1 5 5 H 1.48502 * 109.47226 * 30.00584 * 3 2 1 6 6 H 1.48506 * 109.47153 * 150.00334 * 3 2 1 7 7 C 1.37876 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00042 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00189 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47022 * 179.97438 * 9 7 2 11 11 O 1.45203 * 109.46837 * 179.97438 * 10 9 7 12 12 C 1.34229 * 116.99579 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00177 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99682 * 179.97438 * 12 11 10 15 15 C 1.53006 * 109.47126 * 59.99713 * 14 12 11 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 14 18 18 O 1.42903 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.42902 * 113.99825 * 149.99984 * 18 17 16 20 20 C 1.53004 * 109.47124 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.81845 * 305.69899 * 20 19 18 22 22 C 1.54382 * 109.83049 * 184.81343 * 20 19 18 23 23 C 1.55442 * 102.18473 * 219.18393 * 22 20 19 24 24 C 1.54950 * 100.99337 * 34.03783 * 23 22 20 25 25 O 1.43242 * 109.82840 * 66.58652 * 20 19 18 26 26 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 27 27 C 1.52997 * 109.47084 * 179.97438 * 14 12 11 28 28 H 0.96995 * 119.99759 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47097 * 59.99250 * 9 7 2 30 30 H 1.09000 * 109.46909 * 299.99485 * 9 7 2 31 31 H 1.09003 * 109.46711 * 60.00129 * 10 9 7 32 32 H 1.09000 * 109.47218 * 299.99737 * 10 9 7 33 33 H 1.09001 * 109.46980 * 299.99944 * 14 12 11 34 34 H 1.08998 * 109.46505 * 59.99690 * 15 14 12 35 35 H 1.08996 * 109.46884 * 300.00571 * 15 14 12 36 36 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 37 37 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 38 38 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 39 39 H 1.09001 * 109.47093 * 299.99722 * 19 18 17 40 40 H 1.09000 * 109.47241 * 59.99946 * 19 18 17 41 41 H 1.09008 * 110.84511 * 337.32075 * 22 20 19 42 42 H 1.08993 * 110.84946 * 100.93613 * 22 20 19 43 43 H 1.09005 * 111.06066 * 276.12134 * 23 22 20 44 44 H 1.08998 * 111.18809 * 152.00986 * 23 22 20 45 45 H 1.09006 * 110.30962 * 204.69176 * 24 23 22 46 46 H 1.09001 * 110.39016 * 82.56339 * 24 23 22 47 47 H 1.08992 * 109.47554 * 59.99639 * 26 17 16 48 48 H 1.09004 * 109.47108 * 179.97438 * 26 17 16 49 49 H 1.09002 * 109.47045 * 60.00033 * 27 14 12 50 50 H 1.09001 * 109.47375 * 299.99958 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 8 5.4736 -2.6366 -0.0001 12 6 6.0829 -3.8326 -0.0008 13 8 5.4248 -4.8459 -0.0017 14 6 7.5879 -3.9115 -0.0014 15 6 8.1355 -3.2182 1.2478 16 6 9.6633 -3.2989 1.2474 17 6 10.0966 -4.7662 1.2471 18 8 11.5236 -4.8415 1.2473 19 6 12.0444 -6.0013 1.8998 20 6 13.5730 -5.9775 1.8392 21 1 13.9002 -5.8690 0.8052 22 6 14.1412 -7.2839 2.4340 23 6 15.3845 -6.7749 3.2158 24 6 14.8834 -5.3906 3.6990 25 8 14.0735 -4.8887 2.6241 26 6 9.5490 -5.4594 -0.0022 27 6 8.0216 -5.3787 -0.0015 28 1 -0.4849 0.8400 0.0004 29 1 3.8745 -0.6807 0.8904 30 1 3.8752 -0.6797 -0.8895 31 1 3.6585 -3.1502 -0.8904 32 1 3.6579 -3.1507 0.8897 33 1 7.9772 -3.4171 -0.8915 34 1 7.7460 -3.7126 2.1377 35 1 7.8263 -2.1730 1.2482 36 1 10.0534 -2.8054 2.1376 37 1 10.0530 -2.8047 0.3574 38 1 9.7069 -5.2604 2.1371 39 1 11.7218 -6.0081 2.9410 40 1 11.6752 -6.8964 1.3992 41 1 13.4219 -7.7477 3.1091 42 1 14.4343 -7.9747 1.6436 43 1 16.2467 -6.6724 2.5567 44 1 15.6133 -7.4262 4.0593 45 1 15.7273 -4.7246 3.8797 46 1 14.2862 -5.4978 4.6045 47 1 9.9387 -4.9653 -0.8921 48 1 9.8581 -6.5047 -0.0026 49 1 7.6315 -5.8729 -0.8912 50 1 7.6323 -5.8727 0.8888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815345774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:43 Heat of formation + Delta-G solvation = -211.138701 kcal Electronic energy + Delta-G solvation = -27518.255690 eV Core-core repulsion = 23509.382638 eV Total energy + Delta-G solvation = -4008.873052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49291 -40.00732 -38.90957 -36.76111 -35.92382 -33.31125 -32.68622 -31.55473 -31.11193 -30.72016 -29.81200 -25.98915 -25.36023 -23.44894 -22.93316 -22.22862 -21.61769 -20.88567 -20.56301 -19.83941 -17.54951 -17.45662 -17.02573 -16.62141 -16.54903 -16.21663 -15.99497 -15.51208 -15.29998 -14.65745 -14.28177 -14.20584 -14.00834 -13.83479 -13.49785 -13.19314 -13.09798 -12.93138 -12.55020 -12.46872 -12.27634 -12.25428 -11.99054 -11.75346 -11.56222 -11.47842 -11.35348 -11.34501 -11.26081 -11.21780 -10.81012 -10.69570 -10.57866 -10.48135 -9.95725 -9.91740 -9.80684 -9.69231 -9.65171 -9.34523 -8.62380 -6.12991 -4.14207 2.51116 3.05602 3.19692 3.28128 3.35511 3.39967 3.45723 3.93374 4.27046 4.35057 4.38679 4.39194 4.47172 4.63600 4.67216 4.77501 4.83419 4.89744 4.92801 4.99928 5.02748 5.09417 5.14534 5.14991 5.20639 5.22237 5.23762 5.28270 5.30735 5.42907 5.56777 5.58736 5.65712 5.73409 5.83119 5.91784 5.94613 5.97836 5.98822 6.08194 6.14375 6.45819 6.59787 6.81562 6.99253 7.20075 7.22599 7.62591 8.15189 8.39726 8.88623 9.46634 10.99585 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.001794 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.480066 B =15606.343008 C =16295.880741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.360 6.360 12 C 0.459 3.541 13 O -0.515 6.515 14 C -0.082 4.082 15 C -0.109 4.109 16 C -0.112 4.112 17 C 0.087 3.913 18 O -0.372 6.372 19 C 0.052 3.948 20 C 0.083 3.917 21 H 0.088 0.912 22 C -0.150 4.150 23 C -0.156 4.156 24 C 0.046 3.954 25 O -0.367 6.367 26 C -0.138 4.138 27 C -0.101 4.101 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.616 -14.612 5.394 36.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.009 3.991 11 O -0.276 6.276 12 C 0.302 3.698 13 O -0.404 6.404 14 C -0.102 4.102 15 C -0.147 4.147 16 C -0.149 4.149 17 C 0.030 3.970 18 O -0.291 6.291 19 C -0.025 4.025 20 C 0.025 3.975 21 H 0.106 0.894 22 C -0.187 4.187 23 C -0.194 4.194 24 C -0.031 4.031 25 O -0.286 6.286 26 C -0.176 4.176 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 32.270 -14.410 5.275 35.733 hybrid contribution -0.065 0.272 0.113 0.302 sum 32.205 -14.138 5.388 35.582 Atomic orbital electron populations 1.69895 1.06285 1.27203 1.50118 1.24937 0.94770 0.99187 0.94113 0.86749 0.80435 0.83254 0.78752 1.20056 1.21164 1.18738 1.20853 0.88329 0.95033 1.52390 0.90683 1.19622 0.96978 0.90199 0.97870 1.23375 0.72475 1.01539 1.01703 1.86486 1.26153 1.32276 1.82688 1.23536 0.91588 0.82084 0.72606 1.90633 1.67393 1.36726 1.45685 1.21109 0.88237 0.98872 1.01943 1.21509 0.94679 1.02192 0.96300 1.21557 0.94692 0.94885 1.03801 1.22195 0.80559 0.96995 0.97274 1.87970 1.20259 1.42929 1.77920 1.22952 0.93728 0.88937 0.96849 1.22766 0.91971 0.86254 0.96520 0.89383 1.23145 0.97670 0.97264 1.00669 1.23295 0.98221 0.97118 1.00739 1.23423 0.94456 0.94537 0.90682 1.88562 1.67646 1.30303 1.42093 1.22032 0.95201 1.01054 0.99326 1.21370 0.94523 0.93968 1.03983 0.92439 0.95385 0.95810 0.91792 0.91764 0.87337 0.91204 0.89381 0.90622 0.90572 0.92145 0.92979 0.92413 0.90181 0.89505 0.90175 0.89741 0.89622 0.92233 0.90701 0.91485 0.90523 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.77 5.40 37.16 0.20 1.97 16 11 O -0.36 -6.81 10.12 -39.25 -0.40 -7.20 16 12 C 0.46 7.65 7.26 36.01 0.26 7.91 16 13 O -0.52 -9.94 15.73 -18.75 -0.29 -10.24 16 14 C -0.08 -0.98 2.63 -91.77 -0.24 -1.22 16 15 C -0.11 -1.16 5.14 -26.73 -0.14 -1.30 16 16 C -0.11 -1.06 5.57 -26.73 -0.15 -1.21 16 17 C 0.09 0.81 2.61 -26.73 -0.07 0.74 16 18 O -0.37 -3.84 9.98 -37.67 -0.38 -4.21 16 19 C 0.05 0.41 5.28 37.16 0.20 0.61 16 20 C 0.08 0.61 3.81 -26.00 -0.10 0.51 16 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 22 C -0.15 -0.67 6.56 -24.71 -0.16 -0.84 16 23 C -0.16 -0.65 7.16 -24.40 -0.17 -0.82 16 24 C 0.05 0.28 7.78 38.19 0.30 0.58 16 25 O -0.37 -3.53 11.00 -37.67 -0.41 -3.94 16 26 C -0.14 -1.20 5.54 -26.76 -0.15 -1.35 16 27 C -0.10 -1.06 4.49 -26.76 -0.12 -1.18 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 31 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 32 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 41 H 0.08 0.31 7.85 -51.92 -0.41 -0.10 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 49 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 50 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -33.34 398.45 -9.43 -42.77 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -9.16 Total: -3.93 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.90 Total: -9.41 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.48 Total: -25.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.34 -9.43 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815345774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.370 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds