Wall clock time and date at job start Tue Mar 31 2020 14:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47418 * 270.00128 * 3 2 1 5 5 H 1.48502 * 109.47226 * 30.00584 * 3 2 1 6 6 H 1.48506 * 109.47153 * 150.00334 * 3 2 1 7 7 C 1.37876 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00042 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00189 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47022 * 179.97438 * 9 7 2 11 11 O 1.45203 * 109.46837 * 179.97438 * 10 9 7 12 12 C 1.34229 * 116.99579 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00177 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99682 * 179.97438 * 12 11 10 15 15 C 1.53006 * 109.47126 * 59.99713 * 14 12 11 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 14 18 18 O 1.42903 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.42902 * 113.99825 * 149.99984 * 18 17 16 20 20 C 1.53004 * 109.47124 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.81845 * 305.69899 * 20 19 18 22 22 C 1.54382 * 109.83049 * 184.81343 * 20 19 18 23 23 C 1.55442 * 102.18473 * 219.18393 * 22 20 19 24 24 C 1.54950 * 100.99337 * 34.03783 * 23 22 20 25 25 O 1.43242 * 109.82840 * 66.58652 * 20 19 18 26 26 C 1.52996 * 109.47328 * 60.00126 * 17 16 15 27 27 C 1.52997 * 109.47084 * 179.97438 * 14 12 11 28 28 H 0.96995 * 119.99759 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47097 * 59.99250 * 9 7 2 30 30 H 1.09000 * 109.46909 * 299.99485 * 9 7 2 31 31 H 1.09003 * 109.46711 * 60.00129 * 10 9 7 32 32 H 1.09000 * 109.47218 * 299.99737 * 10 9 7 33 33 H 1.09001 * 109.46980 * 299.99944 * 14 12 11 34 34 H 1.08998 * 109.46505 * 59.99690 * 15 14 12 35 35 H 1.08996 * 109.46884 * 300.00571 * 15 14 12 36 36 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 37 37 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 38 38 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 39 39 H 1.09001 * 109.47093 * 299.99722 * 19 18 17 40 40 H 1.09000 * 109.47241 * 59.99946 * 19 18 17 41 41 H 1.09008 * 110.84511 * 337.32075 * 22 20 19 42 42 H 1.08993 * 110.84946 * 100.93613 * 22 20 19 43 43 H 1.09005 * 111.06066 * 276.12134 * 23 22 20 44 44 H 1.08998 * 111.18809 * 152.00986 * 23 22 20 45 45 H 1.09006 * 110.30962 * 204.69176 * 24 23 22 46 46 H 1.09001 * 110.39016 * 82.56339 * 24 23 22 47 47 H 1.08992 * 109.47554 * 59.99639 * 26 17 16 48 48 H 1.09004 * 109.47108 * 179.97438 * 26 17 16 49 49 H 1.09002 * 109.47045 * 60.00033 * 27 14 12 50 50 H 1.09001 * 109.47375 * 299.99958 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 8 5.4736 -2.6366 -0.0001 12 6 6.0829 -3.8326 -0.0008 13 8 5.4248 -4.8459 -0.0017 14 6 7.5879 -3.9115 -0.0014 15 6 8.1355 -3.2182 1.2478 16 6 9.6633 -3.2989 1.2474 17 6 10.0966 -4.7662 1.2471 18 8 11.5236 -4.8415 1.2473 19 6 12.0444 -6.0013 1.8998 20 6 13.5730 -5.9775 1.8392 21 1 13.9002 -5.8690 0.8052 22 6 14.1412 -7.2839 2.4340 23 6 15.3845 -6.7749 3.2158 24 6 14.8834 -5.3906 3.6990 25 8 14.0735 -4.8887 2.6241 26 6 9.5490 -5.4594 -0.0022 27 6 8.0216 -5.3787 -0.0015 28 1 -0.4849 0.8400 0.0004 29 1 3.8745 -0.6807 0.8904 30 1 3.8752 -0.6797 -0.8895 31 1 3.6585 -3.1502 -0.8904 32 1 3.6579 -3.1507 0.8897 33 1 7.9772 -3.4171 -0.8915 34 1 7.7460 -3.7126 2.1377 35 1 7.8263 -2.1730 1.2482 36 1 10.0534 -2.8054 2.1376 37 1 10.0530 -2.8047 0.3574 38 1 9.7069 -5.2604 2.1371 39 1 11.7218 -6.0081 2.9410 40 1 11.6752 -6.8964 1.3992 41 1 13.4219 -7.7477 3.1091 42 1 14.4343 -7.9747 1.6436 43 1 16.2467 -6.6724 2.5567 44 1 15.6133 -7.4262 4.0593 45 1 15.7273 -4.7246 3.8797 46 1 14.2862 -5.4978 4.6045 47 1 9.9387 -4.9653 -0.8921 48 1 9.8581 -6.5047 -0.0026 49 1 7.6315 -5.8729 -0.8912 50 1 7.6323 -5.8727 0.8888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815345774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:42 Heat of formation + Delta-G solvation = -230.492441 kcal Electronic energy + Delta-G solvation = -27519.094931 eV Core-core repulsion = 23509.382638 eV Total energy + Delta-G solvation = -4009.712293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76218 -40.60290 -39.74948 -37.94448 -37.09000 -35.40445 -33.15983 -32.89307 -32.07753 -31.81794 -30.62516 -27.35917 -26.40412 -24.59202 -23.72201 -22.70396 -22.58590 -22.15794 -21.77150 -20.79198 -19.24174 -18.35870 -18.03288 -17.72909 -17.60440 -17.38177 -16.97354 -16.40664 -16.29784 -15.92689 -15.48779 -15.17816 -14.97058 -14.84944 -14.51909 -14.39730 -14.16834 -13.97205 -13.58427 -13.31478 -13.27039 -13.24618 -13.00226 -12.71364 -12.64642 -12.49236 -12.47004 -12.19265 -12.13683 -12.07656 -12.00742 -11.82135 -11.71384 -11.59127 -11.56413 -11.44429 -11.31724 -11.22356 -10.82245 -10.47344 -10.34558 -8.35532 -6.43933 1.15604 1.37712 1.39309 1.52075 1.71104 2.33597 2.56528 2.96027 2.99363 3.48574 3.57052 3.63163 3.66923 3.88209 3.96577 4.04764 4.09739 4.15811 4.16928 4.19233 4.22802 4.24842 4.31308 4.37469 4.41593 4.46873 4.49589 4.60855 4.65798 4.73562 4.77977 4.81574 4.91022 4.94898 4.96742 5.03757 5.04845 5.07092 5.13906 5.17025 5.25950 5.27638 5.29292 5.35676 5.49621 5.57099 6.09790 6.14294 6.35380 6.62042 6.71491 7.21302 8.80556 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.001794 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.480066 B =15606.343008 C =16295.880741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.545 4.545 8 H 0.034 0.966 9 C -0.003 4.003 10 C 0.092 3.908 11 O -0.359 6.359 12 C 0.457 3.543 13 O -0.544 6.544 14 C -0.075 4.075 15 C -0.104 4.104 16 C -0.106 4.106 17 C 0.087 3.913 18 O -0.391 6.391 19 C 0.048 3.952 20 C 0.076 3.924 21 H 0.082 0.918 22 C -0.144 4.144 23 C -0.150 4.150 24 C 0.036 3.964 25 O -0.401 6.401 26 C -0.128 4.128 27 C -0.096 4.096 28 H 0.271 0.729 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.610 -14.495 5.519 38.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.019 3.981 11 O -0.275 6.275 12 C 0.302 3.698 13 O -0.434 6.434 14 C -0.094 4.094 15 C -0.142 4.142 16 C -0.144 4.144 17 C 0.029 3.971 18 O -0.310 6.310 19 C -0.028 4.028 20 C 0.019 3.981 21 H 0.100 0.900 22 C -0.182 4.182 23 C -0.188 4.188 24 C -0.040 4.040 25 O -0.321 6.321 26 C -0.166 4.166 27 C -0.134 4.134 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 35.292 -14.317 5.403 38.467 hybrid contribution -1.014 0.132 0.092 1.026 sum 34.278 -14.186 5.495 37.503 Atomic orbital electron populations 1.70041 1.08330 1.28637 1.51316 1.25954 0.95675 1.03581 0.93369 0.85604 0.79563 0.77642 0.79565 1.18783 1.20548 1.16687 1.21131 0.90805 0.93786 1.52530 0.94752 1.19459 0.94103 0.91986 0.98498 1.22931 0.74474 0.99768 1.00954 1.86481 1.24171 1.33758 1.83119 1.24565 0.93301 0.80832 0.71120 1.90625 1.68400 1.37420 1.46960 1.21289 0.84212 1.00376 1.03480 1.21475 0.95513 1.01747 0.95448 1.21491 0.93499 0.95334 1.04027 1.22198 0.80444 0.96787 0.97654 1.87947 1.20547 1.44223 1.78309 1.23115 0.94070 0.88819 0.96815 1.22898 0.91735 0.87245 0.96254 0.90034 1.23158 0.97761 0.96083 1.01170 1.23293 0.98082 0.96082 1.01311 1.23607 0.94418 0.95878 0.90096 1.88518 1.68340 1.32099 1.43141 1.21949 0.93430 1.01984 0.99243 1.21344 0.95844 0.92708 1.03473 0.92039 0.94583 0.94724 0.92626 0.92619 0.85337 0.91408 0.89671 0.90520 0.90262 0.91819 0.93111 0.90650 0.89405 0.87992 0.89881 0.87982 0.89178 0.92001 0.90294 0.90106 0.90953 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.54 -31.84 9.66 25.60 0.25 -31.59 16 8 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 9 C 0.00 -0.15 4.42 29.85 0.13 -0.01 16 10 C 0.09 4.00 5.40 71.98 0.39 4.39 16 11 O -0.36 -13.23 10.12 -51.41 -0.52 -13.75 16 12 C 0.46 14.85 7.26 71.24 0.52 15.36 16 13 O -0.54 -20.94 15.73 21.97 0.35 -20.59 16 14 C -0.07 -1.64 2.63 -11.54 -0.03 -1.67 16 15 C -0.10 -2.03 5.14 30.60 0.16 -1.87 16 16 C -0.11 -1.80 5.57 30.59 0.17 -1.63 16 17 C 0.09 1.44 2.61 30.59 0.08 1.52 16 18 O -0.39 -7.46 9.98 -146.65 -1.46 -8.92 16 19 C 0.05 0.68 5.28 71.98 0.38 1.06 16 20 C 0.08 1.03 3.81 31.06 0.12 1.15 16 21 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 22 C -0.14 -0.99 6.56 31.90 0.21 -0.78 16 23 C -0.15 -0.95 7.16 32.10 0.23 -0.72 16 24 C 0.04 0.40 7.78 72.65 0.57 0.97 16 25 O -0.40 -7.48 11.00 -146.65 -1.61 -9.09 16 26 C -0.13 -1.94 5.54 30.58 0.17 -1.77 16 27 C -0.10 -1.85 4.49 30.58 0.14 -1.71 16 28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 30 H 0.03 1.59 7.57 -2.39 -0.02 1.57 16 31 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 32 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 33 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 39 H 0.05 0.71 8.08 -2.39 -0.02 0.70 16 40 H 0.08 0.77 7.87 -2.39 -0.02 0.75 16 41 H 0.09 0.47 7.85 -2.38 -0.02 0.45 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 45 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.08 1.03 7.87 -2.38 -0.02 1.01 16 49 H 0.07 1.47 8.10 -2.39 -0.02 1.46 16 50 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -72.81 398.45 3.70 -69.11 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.83 Total: 12.52 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.93 Total: -16.13 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.30 Total: -58.64 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -3.25 Total: -52.35 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -72.81 3.70 -69.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815345774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.384 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds