Wall clock time and date at job start Tue Mar 31 2020 14:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48507 * 109.47365 * 240.00124 * 3 2 1 5 5 H 1.48497 * 109.47480 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47015 * 120.00244 * 3 2 1 7 7 C 1.37875 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00439 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47522 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47733 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00128 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99716 * 180.02562 * 12 11 10 15 15 C 1.53008 * 109.47337 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47622 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47209 * 300.00066 * 16 15 14 18 18 O 1.42899 * 109.47213 * 179.97438 * 17 16 15 19 19 C 1.42903 * 113.99629 * 150.00082 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 H 1.08991 * 109.87332 * 54.29873 * 20 19 18 22 22 C 1.54098 * 109.87706 * 175.30679 * 20 19 18 23 23 C 1.54806 * 104.19135 * 121.45144 * 22 20 19 24 24 C 1.54998 * 102.09370 * 20.87801 * 23 22 20 25 25 O 1.43748 * 109.87703 * 293.28946 * 20 19 18 26 26 C 1.53008 * 109.46883 * 59.99481 * 17 16 15 27 27 C 1.52989 * 109.47313 * 300.00459 * 26 17 16 28 28 H 0.97007 * 119.99351 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47170 * 60.00305 * 9 7 2 30 30 H 1.08995 * 109.47488 * 300.00742 * 9 7 2 31 31 H 1.09007 * 109.46820 * 59.99882 * 10 9 7 32 32 H 1.09004 * 109.47299 * 300.00119 * 10 9 7 33 33 H 1.08999 * 109.47455 * 60.00036 * 14 12 11 34 34 H 1.08999 * 109.46614 * 59.99772 * 15 14 12 35 35 H 1.09007 * 109.46747 * 300.00137 * 15 14 12 36 36 H 1.08993 * 109.47546 * 180.02562 * 16 15 14 37 37 H 1.08998 * 109.47118 * 59.99698 * 16 15 14 38 38 H 1.08999 * 109.47142 * 300.00238 * 17 16 15 39 39 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 40 40 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 41 41 H 1.09003 * 110.48980 * 240.12561 * 22 20 19 42 42 H 1.09007 * 110.48850 * 2.77532 * 22 20 19 43 43 H 1.09002 * 110.91011 * 139.07868 * 23 22 20 44 44 H 1.08999 * 110.91250 * 262.64827 * 23 22 20 45 45 H 1.09000 * 110.61372 * 81.47553 * 24 23 22 46 46 H 1.08999 * 110.62360 * 204.47758 * 24 23 22 47 47 H 1.08999 * 109.46614 * 60.00433 * 26 17 16 48 48 H 1.09000 * 109.46387 * 179.97438 * 26 17 16 49 49 H 1.08999 * 109.47260 * 299.99579 * 27 26 17 50 50 H 1.09002 * 109.47238 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5191 -4.9196 -0.0011 12 6 2.2501 -6.0453 -0.0007 13 8 3.4567 -5.9821 -0.0003 14 6 1.5659 -7.3880 -0.0019 15 6 2.6196 -8.4974 -0.0017 16 6 1.9250 -9.8606 -0.0022 17 6 1.0503 -9.9878 1.2467 18 8 0.4011 -11.2608 1.2459 19 6 0.1366 -11.7791 2.5511 20 6 -0.5558 -13.1381 2.4294 21 1 0.0400 -13.8027 1.8039 22 6 -0.7397 -13.7594 3.8275 23 6 -2.2688 -13.9661 3.9528 24 6 -2.7196 -13.9621 2.4698 25 8 -1.8639 -12.9707 1.8573 26 6 -0.0034 -8.8784 1.2465 27 6 0.6912 -7.5153 1.2470 28 1 -0.4849 0.8402 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6245 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8718 -3.6045 -0.8905 33 1 0.9441 -7.4782 -0.8925 34 1 3.2417 -8.4074 0.8888 35 1 3.2430 -8.4065 -0.8912 36 1 2.6756 -10.6509 -0.0017 37 1 1.3025 -9.9508 -0.8924 38 1 1.6727 -9.8975 2.1369 39 1 -0.5103 -11.0885 3.0921 40 1 1.0754 -11.8972 3.0922 41 1 -0.2192 -14.7150 3.8919 42 1 -0.3826 -13.0766 4.5985 43 1 -2.4948 -14.9219 4.4255 44 1 -2.7288 -13.1444 4.5018 45 1 -2.5563 -14.9399 2.0165 46 1 -3.7664 -13.6697 2.3875 47 1 -0.6258 -8.9687 0.3563 48 1 -0.6268 -8.9694 2.1360 49 1 1.3137 -7.4250 2.1372 50 1 -0.0594 -6.7249 1.2473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815345775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:46 Heat of formation + Delta-G solvation = -214.591600 kcal Electronic energy + Delta-G solvation = -27510.996423 eV Core-core repulsion = 23501.973642 eV Total energy + Delta-G solvation = -4009.022781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40405 -39.91814 -38.84136 -36.69300 -35.82192 -33.33919 -32.63783 -31.52881 -30.95666 -30.39271 -29.62560 -25.81889 -25.12222 -23.43066 -22.92004 -22.41967 -21.48842 -21.07778 -20.52653 -19.75400 -17.42275 -17.28681 -16.64449 -16.50743 -16.21953 -16.14666 -15.87896 -15.84870 -14.97706 -14.79405 -14.51482 -14.09219 -14.04478 -13.77202 -13.53809 -13.05708 -12.87277 -12.60777 -12.40854 -12.37586 -12.26264 -12.17643 -11.95586 -11.65438 -11.41978 -11.32120 -11.28580 -11.16784 -11.09691 -11.01993 -10.77654 -10.71852 -10.64413 -10.51280 -10.08626 -10.03950 -9.62247 -9.61927 -9.54688 -9.29634 -8.43530 -6.09709 -4.14166 2.60034 3.14655 3.29074 3.30377 3.34487 3.38954 3.46928 4.05598 4.32031 4.39358 4.41935 4.47665 4.51145 4.66321 4.74999 4.84984 4.86393 4.96472 4.97487 5.08415 5.09797 5.11509 5.20117 5.22116 5.26658 5.30911 5.31444 5.35355 5.41401 5.50387 5.56400 5.66251 5.68445 5.79905 5.90250 5.98010 6.01318 6.10671 6.12942 6.17035 6.20931 6.50281 6.65349 7.01578 7.04445 7.56817 7.63378 7.87580 8.20963 8.29397 8.91148 9.50104 11.01692 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.001773 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.552675 B =15785.840314 C =16537.105676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.356 6.356 12 C 0.458 3.542 13 O -0.519 6.519 14 C -0.083 4.083 15 C -0.100 4.100 16 C -0.113 4.113 17 C 0.088 3.912 18 O -0.374 6.374 19 C 0.063 3.937 20 C 0.079 3.921 21 H 0.076 0.924 22 C -0.151 4.151 23 C -0.156 4.156 24 C 0.042 3.958 25 O -0.362 6.362 26 C -0.137 4.137 27 C -0.109 4.109 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -31.035 7.221 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.272 6.272 12 C 0.301 3.699 13 O -0.409 6.409 14 C -0.102 4.102 15 C -0.138 4.138 16 C -0.150 4.150 17 C 0.030 3.970 18 O -0.293 6.293 19 C -0.013 4.013 20 C 0.021 3.979 21 H 0.094 0.906 22 C -0.188 4.188 23 C -0.193 4.193 24 C -0.035 4.035 25 O -0.281 6.281 26 C -0.174 4.174 27 C -0.147 4.147 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.808 -30.772 6.891 31.659 hybrid contribution 0.685 1.020 0.433 1.303 sum -2.123 -29.753 7.325 30.714 Atomic orbital electron populations 1.69967 1.06079 1.27075 1.49689 1.24981 0.94925 0.99368 0.94868 0.86529 0.79479 0.82484 0.78772 1.20065 1.21116 1.20092 1.20950 0.93139 0.90179 1.52308 0.92336 1.19160 0.94179 0.89044 0.98850 1.23627 0.96360 0.78985 1.00838 1.86524 1.42421 1.15805 1.82420 1.23550 0.86488 0.87310 0.72526 1.90614 1.15896 1.88368 1.46009 1.21104 0.98088 0.89069 1.01934 1.21393 0.96651 0.91650 1.04073 1.21576 0.98634 0.97023 0.97799 1.22195 0.93076 0.82974 0.98709 1.87960 1.79655 1.34850 1.26833 1.22738 0.98377 0.94332 0.85901 1.22748 0.85828 0.95689 0.93666 0.90650 1.22943 0.97094 1.01878 0.96933 1.23138 0.95248 1.03086 0.97868 1.23617 0.95821 0.92715 0.91301 1.89061 1.19442 1.55446 1.64122 1.22011 0.98350 0.93633 1.03451 1.21484 0.99083 0.97913 0.96214 0.92663 0.95354 0.95384 0.92421 0.92403 0.87343 0.90887 0.90291 0.90867 0.90672 0.92172 0.92528 0.92212 0.90129 0.90113 0.90071 0.90306 0.92150 0.88856 0.90480 0.91345 0.91391 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.69 5.40 37.16 0.20 1.89 16 11 O -0.36 -7.18 10.12 -39.24 -0.40 -7.58 16 12 C 0.46 8.03 7.25 36.00 0.26 8.29 16 13 O -0.52 -10.33 15.73 -18.75 -0.29 -10.62 16 14 C -0.08 -1.05 2.63 -91.77 -0.24 -1.29 16 15 C -0.10 -1.11 4.49 -26.73 -0.12 -1.23 16 16 C -0.11 -1.07 5.57 -26.73 -0.15 -1.22 16 17 C 0.09 0.85 2.61 -26.72 -0.07 0.78 16 18 O -0.37 -4.01 9.98 -37.24 -0.37 -4.38 16 19 C 0.06 0.53 5.20 37.16 0.19 0.72 16 20 C 0.08 0.61 3.70 -26.16 -0.10 0.52 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 22 C -0.15 -0.76 6.64 -25.21 -0.17 -0.93 16 23 C -0.16 -0.75 7.16 -24.72 -0.18 -0.93 16 24 C 0.04 0.27 7.72 38.21 0.29 0.56 16 25 O -0.36 -3.64 11.19 -37.24 -0.42 -4.05 16 26 C -0.14 -1.37 5.54 -26.73 -0.15 -1.52 16 27 C -0.11 -1.25 5.13 -26.74 -0.14 -1.39 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.29 8.13 -51.92 -0.42 0.87 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 40 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.36 7.70 -51.92 -0.40 -0.04 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.65 7.87 -51.93 -0.41 0.25 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -32.86 401.93 -9.81 -42.67 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -9.19 Total: -3.95 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.92 Total: -8.90 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.48 Total: -26.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.86 -9.81 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815345775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.920 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds