Wall clock time and date at job start Tue Mar 31 2020 14:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48507 * 109.47365 * 240.00124 * 3 2 1 5 5 H 1.48497 * 109.47480 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47015 * 120.00244 * 3 2 1 7 7 C 1.37875 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00439 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47522 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47733 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00128 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99716 * 180.02562 * 12 11 10 15 15 C 1.53008 * 109.47337 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47622 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47209 * 300.00066 * 16 15 14 18 18 O 1.42899 * 109.47213 * 179.97438 * 17 16 15 19 19 C 1.42903 * 113.99629 * 150.00082 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 H 1.08991 * 109.87332 * 54.29873 * 20 19 18 22 22 C 1.54098 * 109.87706 * 175.30679 * 20 19 18 23 23 C 1.54806 * 104.19135 * 121.45144 * 22 20 19 24 24 C 1.54998 * 102.09370 * 20.87801 * 23 22 20 25 25 O 1.43748 * 109.87703 * 293.28946 * 20 19 18 26 26 C 1.53008 * 109.46883 * 59.99481 * 17 16 15 27 27 C 1.52989 * 109.47313 * 300.00459 * 26 17 16 28 28 H 0.97007 * 119.99351 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47170 * 60.00305 * 9 7 2 30 30 H 1.08995 * 109.47488 * 300.00742 * 9 7 2 31 31 H 1.09007 * 109.46820 * 59.99882 * 10 9 7 32 32 H 1.09004 * 109.47299 * 300.00119 * 10 9 7 33 33 H 1.08999 * 109.47455 * 60.00036 * 14 12 11 34 34 H 1.08999 * 109.46614 * 59.99772 * 15 14 12 35 35 H 1.09007 * 109.46747 * 300.00137 * 15 14 12 36 36 H 1.08993 * 109.47546 * 180.02562 * 16 15 14 37 37 H 1.08998 * 109.47118 * 59.99698 * 16 15 14 38 38 H 1.08999 * 109.47142 * 300.00238 * 17 16 15 39 39 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 40 40 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 41 41 H 1.09003 * 110.48980 * 240.12561 * 22 20 19 42 42 H 1.09007 * 110.48850 * 2.77532 * 22 20 19 43 43 H 1.09002 * 110.91011 * 139.07868 * 23 22 20 44 44 H 1.08999 * 110.91250 * 262.64827 * 23 22 20 45 45 H 1.09000 * 110.61372 * 81.47553 * 24 23 22 46 46 H 1.08999 * 110.62360 * 204.47758 * 24 23 22 47 47 H 1.08999 * 109.46614 * 60.00433 * 26 17 16 48 48 H 1.09000 * 109.46387 * 179.97438 * 26 17 16 49 49 H 1.08999 * 109.47260 * 299.99579 * 27 26 17 50 50 H 1.09002 * 109.47238 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5191 -4.9196 -0.0011 12 6 2.2501 -6.0453 -0.0007 13 8 3.4567 -5.9821 -0.0003 14 6 1.5659 -7.3880 -0.0019 15 6 2.6196 -8.4974 -0.0017 16 6 1.9250 -9.8606 -0.0022 17 6 1.0503 -9.9878 1.2467 18 8 0.4011 -11.2608 1.2459 19 6 0.1366 -11.7791 2.5511 20 6 -0.5558 -13.1381 2.4294 21 1 0.0400 -13.8027 1.8039 22 6 -0.7397 -13.7594 3.8275 23 6 -2.2688 -13.9661 3.9528 24 6 -2.7196 -13.9621 2.4698 25 8 -1.8639 -12.9707 1.8573 26 6 -0.0034 -8.8784 1.2465 27 6 0.6912 -7.5153 1.2470 28 1 -0.4849 0.8402 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6245 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8718 -3.6045 -0.8905 33 1 0.9441 -7.4782 -0.8925 34 1 3.2417 -8.4074 0.8888 35 1 3.2430 -8.4065 -0.8912 36 1 2.6756 -10.6509 -0.0017 37 1 1.3025 -9.9508 -0.8924 38 1 1.6727 -9.8975 2.1369 39 1 -0.5103 -11.0885 3.0921 40 1 1.0754 -11.8972 3.0922 41 1 -0.2192 -14.7150 3.8919 42 1 -0.3826 -13.0766 4.5985 43 1 -2.4948 -14.9219 4.4255 44 1 -2.7288 -13.1444 4.5018 45 1 -2.5563 -14.9399 2.0165 46 1 -3.7664 -13.6697 2.3875 47 1 -0.6258 -8.9687 0.3563 48 1 -0.6268 -8.9694 2.1360 49 1 1.3137 -7.4250 2.1372 50 1 -0.0594 -6.7249 1.2473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815345775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:45 Heat of formation + Delta-G solvation = -232.782677 kcal Electronic energy + Delta-G solvation = -27511.785247 eV Core-core repulsion = 23501.973642 eV Total energy + Delta-G solvation = -4009.811605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74696 -40.56331 -39.73761 -37.92926 -37.08017 -35.45915 -33.15770 -32.58830 -31.95886 -31.79655 -30.58110 -27.21861 -26.26501 -24.64592 -23.76815 -23.01096 -22.85657 -22.05822 -21.70885 -20.78138 -18.96989 -18.15118 -18.00668 -17.63307 -17.53004 -17.12065 -16.95375 -16.66435 -16.49893 -15.88206 -15.53039 -15.15644 -14.80629 -14.65155 -14.50876 -14.38727 -14.24058 -14.10471 -13.43073 -13.23862 -13.14945 -13.11818 -13.00278 -12.72294 -12.61620 -12.57935 -12.56562 -12.19473 -12.14292 -12.07442 -12.05933 -11.82239 -11.59723 -11.52756 -11.51430 -11.47003 -11.32571 -11.16856 -10.62428 -10.61872 -10.36511 -8.27822 -6.41471 1.16118 1.40152 1.43993 1.51804 1.75508 2.39373 2.58925 2.96194 3.06305 3.52117 3.60807 3.65021 3.67347 3.87805 3.98696 4.03401 4.09937 4.17291 4.20735 4.23035 4.24520 4.28720 4.30736 4.37734 4.43347 4.45419 4.51211 4.63598 4.67579 4.74811 4.77459 4.82305 4.92686 4.93975 4.97772 5.06738 5.09697 5.12724 5.14323 5.20166 5.26633 5.30629 5.34733 5.44968 5.55504 5.73596 5.98242 6.05287 6.33358 6.69997 6.74898 7.28314 8.84467 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.001773 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.552675 B =15785.840314 C =16537.105676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.089 3.911 11 O -0.364 6.364 12 C 0.457 3.543 13 O -0.542 6.542 14 C -0.076 4.076 15 C -0.093 4.093 16 C -0.105 4.105 17 C 0.088 3.912 18 O -0.392 6.392 19 C 0.058 3.942 20 C 0.073 3.927 21 H 0.071 0.929 22 C -0.146 4.146 23 C -0.152 4.152 24 C 0.034 3.966 25 O -0.397 6.397 26 C -0.129 4.129 27 C -0.105 4.105 28 H 0.268 0.732 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 -32.139 8.022 33.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.016 3.984 11 O -0.281 6.281 12 C 0.302 3.698 13 O -0.432 6.432 14 C -0.095 4.095 15 C -0.131 4.131 16 C -0.143 4.143 17 C 0.031 3.969 18 O -0.312 6.312 19 C -0.018 4.018 20 C 0.015 3.985 21 H 0.089 0.911 22 C -0.184 4.184 23 C -0.189 4.189 24 C -0.042 4.042 25 O -0.317 6.317 26 C -0.167 4.167 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.011 -31.908 7.698 32.885 hybrid contribution 0.387 1.275 0.177 1.344 sum -1.623 -30.633 7.875 31.670 Atomic orbital electron populations 1.70092 1.07809 1.28350 1.50220 1.25973 0.95864 1.03429 0.94020 0.85367 0.78188 0.77386 0.79310 1.19069 1.20409 1.19040 1.21353 0.93696 0.91291 1.52738 0.91724 1.18975 0.94336 0.90658 0.96665 1.23145 0.95049 0.79341 1.00837 1.86526 1.42696 1.15854 1.82981 1.24526 0.86414 0.87727 0.71163 1.90600 1.17014 1.88568 1.47040 1.21283 0.98648 0.86343 1.03233 1.21355 0.96103 0.91763 1.03850 1.21505 0.98803 0.96136 0.97825 1.22194 0.92904 0.82613 0.99208 1.87940 1.79822 1.35008 1.28384 1.22928 0.99345 0.94466 0.85097 1.22885 0.85011 0.95490 0.95118 0.91082 1.22955 0.97422 1.02607 0.95365 1.23138 0.94983 1.04045 0.96749 1.23812 0.95663 0.92420 0.92353 1.89016 1.20714 1.56716 1.65281 1.21937 0.98394 0.92833 1.03546 1.21445 0.98637 0.98547 0.95596 0.92314 0.97580 0.97501 0.92298 0.92375 0.85878 0.91162 0.90549 0.89620 0.90656 0.91083 0.92842 0.90241 0.88574 0.89293 0.88143 0.90578 0.91349 0.88514 0.90914 0.90787 0.91136 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.69 5.35 29.85 0.16 1.85 16 10 C 0.09 4.12 5.40 71.98 0.39 4.51 16 11 O -0.36 -14.89 10.12 -51.34 -0.52 -15.41 16 12 C 0.46 15.91 7.25 71.24 0.52 16.43 16 13 O -0.54 -21.38 15.73 21.97 0.35 -21.04 16 14 C -0.08 -1.86 2.63 -11.54 -0.03 -1.90 16 15 C -0.09 -1.93 4.49 30.59 0.14 -1.79 16 16 C -0.11 -1.81 5.57 30.59 0.17 -1.64 16 17 C 0.09 1.56 2.61 30.60 0.08 1.64 16 18 O -0.39 -7.88 9.98 -147.06 -1.47 -9.35 16 19 C 0.06 0.88 5.20 71.98 0.37 1.26 16 20 C 0.07 1.06 3.70 30.97 0.11 1.17 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 C -0.15 -1.19 6.64 31.58 0.21 -0.98 16 23 C -0.15 -1.19 7.16 31.89 0.23 -0.97 16 24 C 0.03 0.40 7.72 72.67 0.56 0.96 16 25 O -0.40 -7.83 11.19 -147.06 -1.65 -9.48 16 26 C -0.13 -2.45 5.54 30.59 0.17 -2.28 16 27 C -0.10 -2.31 5.13 30.59 0.16 -2.15 16 28 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 2.67 8.13 -2.38 -0.02 2.65 16 32 H 0.06 2.65 8.13 -2.38 -0.02 2.63 16 33 H 0.12 2.69 8.14 -2.39 -0.02 2.68 16 34 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.08 1.64 8.10 -2.38 -0.02 1.62 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 39 H 0.05 0.83 7.87 -2.39 -0.02 0.81 16 40 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 0.58 7.70 -2.38 -0.02 0.56 16 43 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.33 7.87 -2.39 -0.02 1.31 16 49 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 Total: -1.00 -70.74 401.93 3.84 -66.90 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.88 Total: 12.61 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 3.93 Total: -14.60 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -3.29 Total: -55.27 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.74 3.84 -66.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815345775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.887 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds