Wall clock time and date at job start Tue Mar 31 2020 14:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48498 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47035 * 299.99876 * 3 2 1 6 6 H 1.48496 * 109.47399 * 59.99784 * 3 2 1 7 7 C 1.37876 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99772 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46977 * 180.02562 * 9 7 2 11 11 C 1.39480 * 120.00090 * 180.02562 * 10 9 7 12 12 C 1.39067 * 119.93666 * 179.97438 * 11 10 9 13 13 C 1.37782 * 120.06649 * 180.02562 * 12 11 10 14 14 C 1.39606 * 119.93182 * 359.97438 * 13 12 11 15 15 C 1.47859 * 120.06124 * 179.97438 * 14 13 12 16 16 N 1.31251 * 126.44167 * 327.64791 * 15 14 13 17 17 N 1.28365 * 109.62286 * 179.15208 * 16 15 14 18 18 C 1.31000 * 109.99257 * 359.45152 * 17 16 15 19 19 N 1.35314 * 107.78469 * 1.76814 * 18 17 16 20 20 C 1.46484 * 131.46637 * 176.52497 * 19 18 17 21 21 C 1.52768 * 111.19653 * 359.97203 * 20 19 18 22 22 C 1.52283 * 109.51974 * 277.68438 * 21 20 19 23 23 C 1.51762 * 111.98209 * 58.89043 * 22 21 20 24 24 C 1.52767 * 107.82986 * 68.45604 * 23 22 21 25 25 C 1.50716 * 124.57428 * 182.07633 * 18 17 16 26 26 C 1.39604 * 119.87493 * 0.25375 * 14 13 12 27 27 C 1.37783 * 119.93302 * 359.53617 * 26 14 13 28 28 H 0.97000 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47228 * 60.00222 * 9 7 2 30 30 H 1.09002 * 109.47149 * 299.99596 * 9 7 2 31 31 H 0.96999 * 119.99663 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.96646 * 359.97438 * 12 11 10 33 33 H 1.07997 * 120.03580 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.14630 * 239.52334 * 20 19 18 35 35 H 1.08995 * 109.12480 * 120.40569 * 20 19 18 36 36 H 1.08999 * 109.45768 * 157.67218 * 21 20 19 37 37 H 1.09000 * 109.45907 * 37.69926 * 21 20 19 38 38 H 1.09001 * 108.97712 * 179.53012 * 22 21 20 39 39 H 1.09001 * 108.97912 * 298.32463 * 22 21 20 40 40 H 1.09007 * 109.79067 * 188.03435 * 23 22 21 41 41 H 1.08996 * 109.79067 * 308.81428 * 23 22 21 42 42 H 1.09005 * 109.35502 * 44.43214 * 24 23 22 43 43 H 1.09000 * 109.35986 * 164.14435 * 24 23 22 44 44 H 1.09002 * 109.36073 * 139.35447 * 25 18 17 45 45 H 1.08997 * 109.36694 * 19.73593 * 25 18 17 46 46 H 1.07998 * 120.03179 * 179.74675 * 26 14 13 47 47 H 1.07999 * 119.96571 * 180.18948 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7380 -4.9277 -0.0011 12 6 2.6429 -5.9838 -0.0016 13 6 2.1865 -7.2838 -0.0027 14 6 0.8142 -7.5404 -0.0027 15 6 0.3214 -8.9344 -0.0044 16 7 0.9023 -9.9660 -0.5709 17 7 0.2061 -11.0233 -0.3583 18 6 -0.8473 -10.7285 0.3626 19 7 -0.8338 -9.3943 0.5877 20 6 -1.7882 -8.5157 1.2682 21 6 -2.9873 -9.3036 1.7927 22 6 -3.9907 -9.5128 0.6665 23 6 -3.3814 -10.2597 -0.5057 24 6 -3.1038 -11.6924 -0.0541 25 6 -1.8645 -11.7324 0.8410 26 6 -0.0918 -6.4783 -0.0070 27 6 0.3704 -5.1803 -0.0015 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.1566 -3.4354 -0.0009 32 1 3.7043 -5.7846 -0.0020 33 1 2.8897 -8.1035 -0.0035 34 1 -2.1378 -7.7570 0.5679 35 1 -1.2892 -8.0259 2.1043 36 1 -3.4606 -8.7482 2.6023 37 1 -2.6513 -10.2716 2.1643 38 1 -4.8380 -10.0825 1.0480 39 1 -4.3438 -8.5411 0.3212 40 1 -4.0796 -10.2655 -1.3428 41 1 -2.4501 -9.7793 -0.8055 42 1 -3.9628 -12.0691 0.5013 43 1 -2.9355 -12.3208 -0.9287 44 1 -2.1511 -11.4961 1.8658 45 1 -1.4288 -12.7310 0.8106 46 1 -1.1539 -6.6738 -0.0111 47 1 -0.3300 -4.3582 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819397670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:21 Heat of formation + Delta-G solvation = 101.458134 kcal Electronic energy + Delta-G solvation = -27206.379554 eV Core-core repulsion = 23582.956140 eV Total energy + Delta-G solvation = -3623.423414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.06524 -38.95620 -38.37669 -35.55740 -34.59381 -32.83626 -32.58464 -30.93903 -30.65574 -29.14004 -27.89760 -26.52531 -26.00592 -23.48866 -22.43696 -22.40778 -21.96431 -21.28707 -20.37511 -19.23289 -17.50870 -17.16653 -17.06995 -16.09896 -15.79816 -15.46724 -15.26083 -14.90665 -14.76219 -14.37130 -14.06483 -13.55197 -13.43392 -13.24823 -13.05256 -12.93263 -12.90341 -12.70886 -12.14815 -12.13179 -12.07037 -11.91643 -11.73634 -11.29877 -11.18760 -11.10573 -11.05463 -10.91664 -10.68042 -10.47394 -10.26048 -10.10444 -9.92329 -9.82711 -9.48982 -8.86697 -8.66471 -8.51317 -6.67123 -6.30903 -4.36480 1.34136 1.80819 2.22608 2.41927 3.09166 3.15960 3.24021 3.27162 4.07355 4.14707 4.17925 4.25428 4.27381 4.38078 4.43813 4.52461 4.55927 4.73452 4.77384 4.89662 5.06982 5.09662 5.19301 5.22093 5.26439 5.37127 5.37378 5.46919 5.54458 5.60615 5.64622 5.73027 5.76164 5.92031 5.94617 5.96436 6.05383 6.09615 6.21292 6.36692 6.63680 6.76600 6.87568 6.93725 6.99213 7.23638 7.27887 7.53473 7.82237 8.10057 8.50188 8.76340 8.89178 9.30517 10.79655 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.002453 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.288679 B =11413.022114 C =12422.845889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.719 5.719 11 C 0.252 3.748 12 C -0.217 4.217 13 C -0.019 4.019 14 C -0.120 4.120 15 C 0.240 3.760 16 N -0.294 5.294 17 N -0.301 5.301 18 C 0.181 3.819 19 N -0.469 5.469 20 C 0.103 3.897 21 C -0.152 4.152 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.116 4.116 25 C -0.039 4.039 26 C -0.054 4.054 27 C -0.202 4.202 28 H 0.266 0.734 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.394 0.606 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.492 -19.825 4.310 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.339 5.339 11 C 0.139 3.861 12 C -0.240 4.240 13 C -0.040 4.040 14 C -0.126 4.126 15 C -0.024 4.024 16 N -0.133 5.133 17 N -0.142 5.142 18 C -0.085 4.085 19 N -0.161 5.161 20 C -0.019 4.019 21 C -0.189 4.189 22 C -0.159 4.159 23 C -0.171 4.171 24 C -0.154 4.154 25 C -0.078 4.078 26 C -0.074 4.074 27 C -0.225 4.225 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.228 0.772 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.844 -20.327 3.544 22.074 hybrid contribution -0.222 1.939 0.648 2.056 sum -8.065 -18.388 4.192 20.512 Atomic orbital electron populations 1.69944 1.06095 1.27379 1.49176 1.24928 0.94957 0.99535 0.94511 0.86343 0.79924 0.82768 0.77827 1.19599 1.20708 1.20721 1.21218 0.93451 0.90317 1.52955 0.91827 1.19203 0.88691 0.82659 0.96852 1.45661 1.10016 1.02636 1.75558 1.18233 0.92849 0.85734 0.89292 1.20481 0.98823 0.91438 1.13300 1.20688 0.93427 0.96033 0.93873 1.16976 0.93623 0.85592 1.16368 1.23208 0.85635 0.96230 0.97329 1.74365 1.23779 0.94875 1.20289 1.74324 1.03582 1.21040 1.15234 1.24305 0.99531 0.82819 1.01887 1.46474 1.19331 1.07255 1.43006 1.22123 0.89543 0.92265 0.97985 1.22118 0.95050 1.02422 0.99276 1.21322 0.98140 1.01187 0.95296 1.21577 1.01816 0.95726 0.97977 1.21566 0.96609 0.97418 0.99831 1.20389 0.91767 0.96213 0.99470 1.20937 0.98138 0.91695 0.96652 1.20608 0.94212 0.96632 1.11063 0.92428 0.95836 0.95872 0.77191 0.86058 0.85890 0.88698 0.88935 0.89226 0.89086 0.91260 0.91726 0.91272 0.91344 0.90678 0.91253 0.89204 0.88547 0.86641 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.05 9.28 -34.44 -0.32 -14.37 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 9 C 0.25 5.91 4.66 -5.19 -0.02 5.88 16 10 N -0.72 -14.25 5.72 -59.77 -0.34 -14.60 16 11 C 0.25 4.52 6.65 -83.76 -0.56 3.96 16 12 C -0.22 -3.44 9.87 -39.44 -0.39 -3.83 16 13 C -0.02 -0.30 9.73 -39.24 -0.38 -0.68 16 14 C -0.12 -1.87 5.78 -104.94 -0.61 -2.47 16 15 C 0.24 3.73 7.50 -153.64 -1.15 2.58 16 16 N -0.29 -5.17 12.19 32.62 0.40 -4.77 16 17 N -0.30 -4.89 12.21 32.84 0.40 -4.49 16 18 C 0.18 2.27 5.74 -154.74 -0.89 1.38 16 19 N -0.47 -5.82 2.33 -110.99 -0.26 -6.08 16 20 C 0.10 0.94 4.66 -4.17 -0.02 0.92 16 21 C -0.15 -0.96 5.56 -27.22 -0.15 -1.11 16 22 C -0.12 -0.77 5.18 -27.72 -0.14 -0.91 16 23 C -0.13 -1.07 5.62 -27.48 -0.15 -1.23 16 24 C -0.12 -0.80 5.75 -26.89 -0.15 -0.95 16 25 C -0.04 -0.32 5.49 -27.91 -0.15 -0.47 16 26 C -0.05 -0.80 8.94 -39.24 -0.35 -1.15 16 27 C -0.20 -3.48 9.29 -39.44 -0.37 -3.85 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.02 0.61 7.94 -51.93 -0.41 0.20 16 30 H 0.02 0.59 7.94 -51.93 -0.41 0.18 16 31 H 0.39 7.26 8.33 -40.82 -0.34 6.92 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 0.86 5.46 -51.93 -0.28 0.57 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.55 4.08 -51.93 -0.21 0.34 16 38 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 39 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.76 5.00 -51.93 -0.26 0.50 16 42 H 0.07 0.36 7.81 -51.93 -0.41 -0.04 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.56 5.22 -51.93 -0.27 0.29 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.12 1.44 5.03 -52.49 -0.26 1.18 16 47 H 0.13 2.36 6.71 -52.49 -0.35 2.01 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -30.62 363.97 -11.05 -41.66 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.54 Total: 6.14 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -5.91 Total: -14.71 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.93 Total: -53.82 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.62 -11.05 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819397670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.120 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds