Wall clock time and date at job start Tue Mar 31 2020 14:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48498 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47035 * 299.99876 * 3 2 1 6 6 H 1.48496 * 109.47399 * 59.99784 * 3 2 1 7 7 C 1.37876 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99772 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46977 * 180.02562 * 9 7 2 11 11 C 1.39480 * 120.00090 * 180.02562 * 10 9 7 12 12 C 1.39067 * 119.93666 * 179.97438 * 11 10 9 13 13 C 1.37782 * 120.06649 * 180.02562 * 12 11 10 14 14 C 1.39606 * 119.93182 * 359.97438 * 13 12 11 15 15 C 1.47859 * 120.06124 * 179.97438 * 14 13 12 16 16 N 1.31251 * 126.44167 * 327.64791 * 15 14 13 17 17 N 1.28365 * 109.62286 * 179.15208 * 16 15 14 18 18 C 1.31000 * 109.99257 * 359.45152 * 17 16 15 19 19 N 1.35314 * 107.78469 * 1.76814 * 18 17 16 20 20 C 1.46484 * 131.46637 * 176.52497 * 19 18 17 21 21 C 1.52768 * 111.19653 * 359.97203 * 20 19 18 22 22 C 1.52283 * 109.51974 * 277.68438 * 21 20 19 23 23 C 1.51762 * 111.98209 * 58.89043 * 22 21 20 24 24 C 1.52767 * 107.82986 * 68.45604 * 23 22 21 25 25 C 1.50716 * 124.57428 * 182.07633 * 18 17 16 26 26 C 1.39604 * 119.87493 * 0.25375 * 14 13 12 27 27 C 1.37783 * 119.93302 * 359.53617 * 26 14 13 28 28 H 0.97000 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47228 * 60.00222 * 9 7 2 30 30 H 1.09002 * 109.47149 * 299.99596 * 9 7 2 31 31 H 0.96999 * 119.99663 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.96646 * 359.97438 * 12 11 10 33 33 H 1.07997 * 120.03580 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.14630 * 239.52334 * 20 19 18 35 35 H 1.08995 * 109.12480 * 120.40569 * 20 19 18 36 36 H 1.08999 * 109.45768 * 157.67218 * 21 20 19 37 37 H 1.09000 * 109.45907 * 37.69926 * 21 20 19 38 38 H 1.09001 * 108.97712 * 179.53012 * 22 21 20 39 39 H 1.09001 * 108.97912 * 298.32463 * 22 21 20 40 40 H 1.09007 * 109.79067 * 188.03435 * 23 22 21 41 41 H 1.08996 * 109.79067 * 308.81428 * 23 22 21 42 42 H 1.09005 * 109.35502 * 44.43214 * 24 23 22 43 43 H 1.09000 * 109.35986 * 164.14435 * 24 23 22 44 44 H 1.09002 * 109.36073 * 139.35447 * 25 18 17 45 45 H 1.08997 * 109.36694 * 19.73593 * 25 18 17 46 46 H 1.07998 * 120.03179 * 179.74675 * 26 14 13 47 47 H 1.07999 * 119.96571 * 180.18948 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7380 -4.9277 -0.0011 12 6 2.6429 -5.9838 -0.0016 13 6 2.1865 -7.2838 -0.0027 14 6 0.8142 -7.5404 -0.0027 15 6 0.3214 -8.9344 -0.0044 16 7 0.9023 -9.9660 -0.5709 17 7 0.2061 -11.0233 -0.3583 18 6 -0.8473 -10.7285 0.3626 19 7 -0.8338 -9.3943 0.5877 20 6 -1.7882 -8.5157 1.2682 21 6 -2.9873 -9.3036 1.7927 22 6 -3.9907 -9.5128 0.6665 23 6 -3.3814 -10.2597 -0.5057 24 6 -3.1038 -11.6924 -0.0541 25 6 -1.8645 -11.7324 0.8410 26 6 -0.0918 -6.4783 -0.0070 27 6 0.3704 -5.1803 -0.0015 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.1566 -3.4354 -0.0009 32 1 3.7043 -5.7846 -0.0020 33 1 2.8897 -8.1035 -0.0035 34 1 -2.1378 -7.7570 0.5679 35 1 -1.2892 -8.0259 2.1043 36 1 -3.4606 -8.7482 2.6023 37 1 -2.6513 -10.2716 2.1643 38 1 -4.8380 -10.0825 1.0480 39 1 -4.3438 -8.5411 0.3212 40 1 -4.0796 -10.2655 -1.3428 41 1 -2.4501 -9.7793 -0.8055 42 1 -3.9628 -12.0691 0.5013 43 1 -2.9355 -12.3208 -0.9287 44 1 -2.1511 -11.4961 1.8658 45 1 -1.4288 -12.7310 0.8106 46 1 -1.1539 -6.6738 -0.0111 47 1 -0.3300 -4.3582 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819397670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:20 Heat of formation + Delta-G solvation = 85.561831 kcal Electronic energy + Delta-G solvation = -27207.068870 eV Core-core repulsion = 23582.956140 eV Total energy + Delta-G solvation = -3624.112729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.12653 -40.31303 -39.07806 -37.01010 -35.63292 -34.63546 -33.41363 -32.12178 -31.96126 -30.30025 -29.02011 -27.95614 -26.91929 -25.16599 -23.67211 -23.30436 -23.01257 -22.26916 -21.63720 -20.00339 -19.18502 -18.18924 -17.99095 -17.65875 -16.97077 -16.68253 -16.38444 -16.05344 -15.68398 -15.55174 -15.17170 -15.09295 -14.69564 -14.59466 -14.12883 -14.01652 -13.87007 -13.59578 -13.57441 -13.31347 -13.11154 -12.81503 -12.75820 -12.68751 -12.55275 -12.32346 -12.23646 -11.92833 -11.80543 -11.67220 -11.47004 -11.42839 -11.22635 -10.86997 -10.77770 -10.66579 -9.97373 -9.90883 -8.32144 -8.14474 -6.45002 0.11652 0.50007 1.10394 1.40529 1.41749 1.46108 1.53994 1.90603 2.32913 2.80865 2.91882 3.04115 3.28083 3.39505 3.50237 3.62609 3.84695 3.89935 3.97792 3.99134 4.08326 4.16054 4.31033 4.36613 4.46198 4.50956 4.64580 4.68133 4.69981 4.82368 4.85988 4.91407 5.01160 5.02024 5.05300 5.10304 5.13292 5.19162 5.22408 5.28782 5.35713 5.41165 5.43262 5.47532 5.52381 5.59048 5.81895 5.93444 6.01137 6.41863 6.70272 7.07733 7.27891 7.75645 8.79542 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.002453 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.288679 B =11413.022114 C =12422.845889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.268 3.732 10 N -0.725 5.725 11 C 0.229 3.771 12 C -0.205 4.205 13 C -0.025 4.025 14 C -0.112 4.112 15 C 0.221 3.779 16 N -0.326 5.326 17 N -0.344 5.344 18 C 0.200 3.800 19 N -0.461 5.461 20 C 0.092 3.908 21 C -0.144 4.144 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.110 4.110 25 C -0.041 4.041 26 C -0.045 4.045 27 C -0.214 4.214 28 H 0.269 0.731 29 H -0.004 1.004 30 H -0.001 1.001 31 H 0.400 0.600 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.140 0.860 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 -20.998 5.600 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.146 3.854 10 N -0.349 5.349 11 C 0.120 3.880 12 C -0.228 4.228 13 C -0.045 4.045 14 C -0.118 4.118 15 C -0.044 4.044 16 N -0.166 5.166 17 N -0.185 5.185 18 C -0.067 4.067 19 N -0.152 5.152 20 C -0.028 4.028 21 C -0.181 4.181 22 C -0.156 4.156 23 C -0.173 4.173 24 C -0.148 4.148 25 C -0.080 4.080 26 C -0.065 4.065 27 C -0.237 4.237 28 H 0.078 0.922 29 H 0.014 0.986 30 H 0.017 0.983 31 H 0.235 0.765 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.157 0.843 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.819 -21.548 4.839 23.780 hybrid contribution -0.019 2.090 0.242 2.104 sum -8.839 -19.458 5.080 21.967 Atomic orbital electron populations 1.70061 1.07670 1.28412 1.50108 1.25851 0.95799 1.03208 0.94021 0.85263 0.78910 0.78187 0.77822 1.18622 1.20406 1.20238 1.21610 0.94013 0.91296 1.52626 0.91148 1.18658 0.88698 0.83705 0.94379 1.45275 1.09504 1.02413 1.77678 1.18431 0.93520 0.85366 0.90695 1.20633 0.99564 0.90795 1.11808 1.20864 0.93796 0.96138 0.93724 1.17145 0.93846 0.85984 1.14784 1.23134 0.87058 0.95782 0.98475 1.74247 1.25212 0.95749 1.21362 1.74244 1.05437 1.21187 1.17629 1.25131 0.98817 0.83419 0.99334 1.46662 1.18709 1.07496 1.42299 1.22445 0.90149 0.92466 0.97769 1.22151 0.93626 1.02569 0.99732 1.21317 0.98624 1.01204 0.94484 1.21571 1.00256 0.96497 0.99015 1.21571 0.97009 0.96556 0.99689 1.20701 0.91076 0.95192 1.01038 1.21069 0.99399 0.90496 0.95512 1.20616 0.93986 0.97148 1.11968 0.92199 0.98607 0.98293 0.76469 0.84040 0.84913 0.88862 0.88641 0.86894 0.88355 0.88837 0.92021 0.91168 0.94853 0.87402 0.92121 0.86459 0.87869 0.84302 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 13.29 21.45 0.28 -52.03 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.56 -29.46 9.28 25.60 0.24 -29.22 16 8 H 0.07 3.53 7.60 -2.91 -0.02 3.51 16 9 C 0.27 13.40 4.66 85.63 0.40 13.80 16 10 N -0.73 -29.60 5.72 -343.02 -1.96 -31.56 16 11 C 0.23 8.41 6.65 38.32 0.26 8.66 16 12 C -0.21 -6.44 9.87 22.36 0.22 -6.22 16 13 C -0.02 -0.76 9.73 22.49 0.22 -0.54 16 14 C -0.11 -3.48 5.78 -20.07 -0.12 -3.60 16 15 C 0.22 6.85 7.50 136.17 1.02 7.88 16 16 N -0.33 -11.63 12.19 -50.71 -0.62 -12.25 16 17 N -0.34 -11.22 12.21 -50.01 -0.61 -11.83 16 18 C 0.20 4.80 5.74 137.90 0.79 5.59 16 19 N -0.46 -10.97 2.33 -505.07 -1.18 -12.15 16 20 C 0.09 1.52 4.66 86.31 0.40 1.92 16 21 C -0.14 -1.32 5.56 30.28 0.17 -1.15 16 22 C -0.12 -1.10 5.18 29.95 0.16 -0.95 16 23 C -0.14 -1.90 5.62 30.11 0.17 -1.73 16 24 C -0.11 -1.19 5.75 30.49 0.18 -1.02 16 25 C -0.04 -0.56 5.49 29.83 0.16 -0.39 16 26 C -0.04 -1.34 8.94 22.49 0.20 -1.14 16 27 C -0.21 -7.62 9.29 22.36 0.21 -7.41 16 28 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.00 -0.21 7.94 -2.39 -0.02 -0.23 16 30 H 0.00 -0.04 7.94 -2.39 -0.02 -0.06 16 31 H 0.40 14.96 8.33 -92.71 -0.77 14.19 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.09 1.56 5.46 -2.39 -0.01 1.55 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.77 4.08 -2.39 -0.01 0.76 16 38 H 0.09 0.49 7.87 -2.39 -0.02 0.47 16 39 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 40 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.03 0.71 5.00 -2.39 -0.01 0.69 16 42 H 0.11 0.53 7.81 -2.38 -0.02 0.52 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.12 0.97 5.22 -2.39 -0.01 0.95 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 46 H 0.14 3.42 5.03 -2.91 -0.01 3.40 16 47 H 0.11 4.42 6.71 -2.91 -0.02 4.40 16 Total: -1.00 -68.88 363.97 3.31 -65.56 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.24 Total: 25.11 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 5.13 Total: -14.46 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -4.08 Total: -119.82 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.88 3.31 -65.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819397670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.126 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds