Wall clock time and date at job start Tue Mar 31 2020 14:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 111.00005 * 2 1 4 4 C 1.50702 * 109.47669 * 293.95563 * 3 2 1 5 5 H 1.07998 * 119.99168 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00241 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99869 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99873 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47116 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46824 * 120.00053 * 8 6 4 11 11 H 1.48495 * 109.46923 * 240.00106 * 8 6 4 12 12 C 1.46900 * 110.99989 * 123.95930 * 2 1 3 13 13 C 1.52999 * 109.47050 * 164.01203 * 12 2 1 14 14 H 1.08997 * 109.47612 * 58.50709 * 13 12 2 15 15 O 1.42901 * 109.46955 * 298.50425 * 13 12 2 16 16 C 1.53000 * 109.47022 * 178.50681 * 13 12 2 17 17 N 1.46505 * 109.47113 * 184.99565 * 16 13 12 18 18 C 1.39964 * 120.00015 * 179.97438 * 17 16 13 19 19 C 1.38721 * 120.09020 * 359.97438 * 18 17 16 20 20 C 1.38224 * 119.98326 * 180.02562 * 19 18 17 21 21 C 1.38254 * 120.15609 * 0.02562 * 20 19 18 22 22 C 1.38288 * 120.18207 * 359.97438 * 21 20 19 23 23 C 1.38502 * 120.01738 * 0.02562 * 22 21 20 24 24 O 1.36015 * 120.07950 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99905 * 0.02562 * 24 23 22 26 26 C 1.52992 * 109.46844 * 179.97438 * 25 24 23 27 27 F 1.39899 * 109.47461 * 65.00262 * 26 25 24 28 28 H 1.09004 * 109.46733 * 301.52855 * 1 2 3 29 29 H 1.09002 * 109.46958 * 61.52872 * 1 2 3 30 30 H 1.08993 * 109.46772 * 181.52824 * 1 2 3 31 31 H 1.09000 * 109.47354 * 53.96022 * 3 2 1 32 32 H 1.09008 * 109.47037 * 173.95354 * 3 2 1 33 33 H 0.97000 * 119.98974 * 179.97438 * 7 6 4 34 34 H 1.08990 * 109.47367 * 44.00759 * 12 2 1 35 35 H 1.09005 * 109.46906 * 284.00637 * 12 2 1 36 36 H 0.96694 * 114.00157 * 300.00263 * 15 13 12 37 37 H 1.09004 * 109.47439 * 65.00116 * 16 13 12 38 38 H 1.08999 * 109.47382 * 304.99529 * 16 13 12 39 39 H 0.96998 * 120.00002 * 0.02562 * 17 16 13 40 40 H 1.08007 * 120.01272 * 0.04842 * 19 18 17 41 41 H 1.07999 * 119.92276 * 180.02562 * 20 19 18 42 42 H 1.08001 * 119.91137 * 180.27305 * 21 20 19 43 43 H 1.07997 * 119.98768 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47209 * 300.00320 * 25 24 23 45 45 H 1.08998 * 109.46704 * 59.99586 * 25 24 23 46 46 H 1.09004 * 109.47191 * 184.99988 * 26 25 24 47 47 H 1.08997 * 109.47475 * 305.00005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0268 3.3496 -1.5284 7 7 2.7112 4.0022 -0.6143 8 14 1.5830 4.1870 -3.1381 9 1 0.8157 3.2444 -3.9913 10 1 0.7551 5.3878 -2.8595 11 1 2.8249 4.5945 -3.8428 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0840 0.8983 14 1 4.0283 -0.1550 0.7697 15 8 3.6034 -1.8839 -0.2787 16 6 4.0308 -1.8496 2.0997 17 7 5.4715 -2.0498 1.9250 18 6 6.2072 -2.7297 2.9024 19 6 5.5742 -3.2144 4.0376 20 6 6.3030 -3.8851 5.0018 21 6 7.6627 -4.0741 4.8382 22 6 8.3006 -3.5938 3.7091 23 6 7.5774 -2.9207 2.7384 24 8 8.2036 -2.4472 1.6276 25 6 9.6099 -2.6803 1.5266 26 6 10.1335 -2.0806 0.2201 27 9 9.9906 -0.6894 0.2552 28 1 -0.3633 0.5374 0.8760 29 1 -0.3633 0.4899 -0.9034 30 1 -0.3632 -1.0273 0.0274 31 1 1.5612 1.9273 0.8310 32 1 3.0798 1.3444 0.1083 33 1 2.9857 4.9184 -0.7764 34 1 1.4357 -1.6956 1.2398 35 1 1.8935 -0.1783 2.0498 36 1 3.1334 -2.7278 -0.2348 37 1 3.5360 -2.8180 2.1752 38 1 3.8512 -1.2779 3.0102 39 1 5.9157 -1.7105 1.1322 40 1 4.5121 -3.0681 4.1680 41 1 5.8091 -4.2624 5.8850 42 1 8.2276 -4.6026 5.5919 43 1 9.3628 -3.7435 3.5843 44 1 10.1172 -2.2128 2.3705 45 1 9.8019 -3.7531 1.5363 46 1 11.1868 -2.3346 0.1002 47 1 9.5650 -2.4832 -0.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819489432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:47 Heat of formation + Delta-G solvation = -104.963777 kcal Electronic energy + Delta-G solvation = -27638.460143 eV Core-core repulsion = 23543.023628 eV Total energy + Delta-G solvation = -4095.436516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.77403 -40.32229 -38.34347 -37.50686 -35.80957 -34.72363 -32.47487 -31.49201 -30.53077 -29.79859 -28.33898 -27.27440 -25.76017 -24.21286 -23.46271 -22.28724 -21.85704 -21.02032 -20.07154 -18.54490 -17.19438 -16.86363 -16.65571 -16.34307 -15.94248 -15.77048 -15.58261 -15.14179 -15.03589 -14.69635 -14.67004 -14.45679 -14.28389 -13.71883 -13.49368 -13.45025 -13.16678 -13.00549 -12.58295 -12.23814 -11.94415 -11.77780 -11.54427 -11.43540 -11.39274 -11.18972 -11.16977 -10.97520 -10.92539 -10.73307 -10.61588 -10.36221 -10.10887 -9.76451 -9.65938 -9.12811 -8.62634 -8.40302 -7.22653 -7.17216 -5.99750 -4.00273 1.32553 1.53935 2.90448 3.33812 3.41075 3.45341 3.46707 3.78574 4.20862 4.43672 4.44612 4.62889 4.64546 4.70989 4.80172 4.81137 4.90250 4.99345 5.18263 5.22861 5.30952 5.36734 5.39882 5.45517 5.49024 5.57775 5.63374 5.69424 5.73949 6.00254 6.06143 6.07713 6.26270 6.32627 6.41727 6.52488 6.68778 6.71360 7.00879 7.27124 7.31516 7.48328 7.81144 7.85230 8.04822 8.10233 8.20781 8.56221 9.07025 9.63674 11.11414 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002889 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.287588 B = 9691.173274 C =11493.285919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.191 3.809 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.029 3.971 13 C 0.104 3.896 14 H 0.110 0.890 15 O -0.538 6.538 16 C 0.095 3.905 17 N -0.731 5.731 18 C 0.206 3.794 19 C -0.174 4.174 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.163 4.163 23 C 0.051 3.949 24 O -0.312 6.312 25 C 0.030 3.970 26 C 0.066 3.934 27 F -0.208 7.208 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.043 0.957 31 H -0.011 1.011 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.364 0.636 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.411 0.589 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 -18.929 9.919 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.101 4.101 13 C 0.044 3.956 14 H 0.127 0.873 15 O -0.341 6.341 16 C -0.031 4.031 17 N -0.362 5.362 18 C 0.101 3.899 19 C -0.198 4.198 20 C -0.122 4.122 21 C -0.171 4.171 22 C -0.182 4.182 23 C 0.003 3.997 24 O -0.226 6.226 25 C -0.046 4.046 26 C 0.012 3.988 27 F -0.189 7.189 28 H 0.029 0.971 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.209 0.791 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.248 0.752 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.014 -18.295 9.172 23.731 hybrid contribution -0.431 0.624 0.153 0.774 sum 11.583 -17.671 9.325 23.095 Atomic orbital electron populations 1.22196 0.88709 0.98917 1.01013 1.62036 1.06613 1.17916 1.38970 1.19796 0.95493 0.81419 0.96653 1.21173 1.34628 0.96770 1.01652 0.91839 1.24993 0.95341 0.97398 0.96984 1.69969 1.38529 1.11391 1.34012 0.86444 0.78152 0.79236 0.83613 1.19665 1.21188 1.20984 1.22594 0.95110 0.98483 0.93928 1.22137 0.95720 0.94375 0.83406 0.87256 1.86694 1.75414 1.33449 1.38532 1.22092 0.81303 0.99919 0.99745 1.44554 1.06991 1.61703 1.22912 1.17258 0.87542 0.94506 0.90582 1.20506 1.00140 1.04928 0.94219 1.20790 0.93977 0.98910 0.98513 1.20623 0.94762 1.03713 0.98022 1.20935 0.99516 1.02383 0.95380 1.18401 0.90706 1.01703 0.88925 1.86042 1.21638 1.75739 1.39219 1.23371 0.81041 1.01123 0.99029 1.22041 1.02164 0.76670 0.97974 1.92836 1.97418 1.31051 1.97629 0.97087 0.90732 0.93838 0.99321 0.95090 0.93013 0.91861 0.94858 0.79067 0.92254 0.91627 0.75240 0.85529 0.86216 0.86440 0.85928 0.91091 0.90559 0.88790 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.33 60.07 0.56 1.34 16 2 N -0.53 -11.38 4.60 -244.37 -1.12 -12.51 16 3 C 0.19 5.03 4.57 -4.98 -0.02 5.00 16 4 C -0.50 -14.42 8.54 -34.44 -0.29 -14.72 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.03 0.48 4.63 -3.82 -0.02 0.47 16 13 C 0.10 1.66 3.02 -26.73 -0.08 1.58 16 14 H 0.11 2.13 6.55 -51.93 -0.34 1.79 16 15 O -0.54 -8.91 13.18 -35.23 -0.46 -9.38 16 16 C 0.09 1.21 4.56 -4.04 -0.02 1.20 16 17 N -0.73 -10.13 5.68 -58.49 -0.33 -10.46 16 18 C 0.21 2.73 6.67 -83.56 -0.56 2.17 16 19 C -0.17 -2.03 9.31 -39.41 -0.37 -2.39 16 20 C -0.10 -1.05 10.04 -39.58 -0.40 -1.44 16 21 C -0.15 -1.48 10.04 -39.56 -0.40 -1.88 16 22 C -0.16 -1.71 9.04 -39.47 -0.36 -2.06 16 23 C 0.05 0.64 6.70 -39.08 -0.26 0.38 16 24 O -0.31 -3.96 9.38 -19.79 -0.19 -4.14 16 25 C 0.03 0.26 5.20 37.15 0.19 0.45 16 26 C 0.07 0.53 7.92 37.15 0.29 0.82 16 27 F -0.21 -2.65 17.35 2.25 0.04 -2.61 16 28 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 29 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 30 H 0.04 0.70 7.97 -51.93 -0.41 0.28 16 31 H -0.01 -0.31 8.11 -51.93 -0.42 -0.73 16 32 H 0.03 0.87 6.38 -51.92 -0.33 0.54 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 35 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.36 4.58 9.04 45.56 0.41 4.99 16 37 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 38 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 39 H 0.41 6.29 7.84 -40.82 -0.32 5.97 16 40 H 0.13 1.31 6.74 -52.48 -0.35 0.96 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.98 6.30 -52.49 -0.33 0.65 16 44 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.08 0.47 7.66 -51.93 -0.40 0.07 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -33.98 388.28 -8.85 -42.83 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.53 Total: 7.41 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.82 Total: -7.63 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.72 Total: -49.43 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.65 Total: -13.52 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.98 -8.85 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819489432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.138 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds