Wall clock time and date at job start Tue Mar 31 2020 14:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 111.00005 * 2 1 4 4 C 1.50702 * 109.47669 * 293.95563 * 3 2 1 5 5 H 1.07998 * 119.99168 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00241 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99869 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99873 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47116 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46824 * 120.00053 * 8 6 4 11 11 H 1.48495 * 109.46923 * 240.00106 * 8 6 4 12 12 C 1.46900 * 110.99989 * 123.95930 * 2 1 3 13 13 C 1.52999 * 109.47050 * 164.01203 * 12 2 1 14 14 H 1.08997 * 109.47612 * 58.50709 * 13 12 2 15 15 O 1.42901 * 109.46955 * 298.50425 * 13 12 2 16 16 C 1.53000 * 109.47022 * 178.50681 * 13 12 2 17 17 N 1.46505 * 109.47113 * 184.99565 * 16 13 12 18 18 C 1.39964 * 120.00015 * 179.97438 * 17 16 13 19 19 C 1.38721 * 120.09020 * 359.97438 * 18 17 16 20 20 C 1.38224 * 119.98326 * 180.02562 * 19 18 17 21 21 C 1.38254 * 120.15609 * 0.02562 * 20 19 18 22 22 C 1.38288 * 120.18207 * 359.97438 * 21 20 19 23 23 C 1.38502 * 120.01738 * 0.02562 * 22 21 20 24 24 O 1.36015 * 120.07950 * 179.97438 * 23 22 21 25 25 C 1.42902 * 116.99905 * 0.02562 * 24 23 22 26 26 C 1.52992 * 109.46844 * 179.97438 * 25 24 23 27 27 F 1.39899 * 109.47461 * 65.00262 * 26 25 24 28 28 H 1.09004 * 109.46733 * 301.52855 * 1 2 3 29 29 H 1.09002 * 109.46958 * 61.52872 * 1 2 3 30 30 H 1.08993 * 109.46772 * 181.52824 * 1 2 3 31 31 H 1.09000 * 109.47354 * 53.96022 * 3 2 1 32 32 H 1.09008 * 109.47037 * 173.95354 * 3 2 1 33 33 H 0.97000 * 119.98974 * 179.97438 * 7 6 4 34 34 H 1.08990 * 109.47367 * 44.00759 * 12 2 1 35 35 H 1.09005 * 109.46906 * 284.00637 * 12 2 1 36 36 H 0.96694 * 114.00157 * 300.00263 * 15 13 12 37 37 H 1.09004 * 109.47439 * 65.00116 * 16 13 12 38 38 H 1.08999 * 109.47382 * 304.99529 * 16 13 12 39 39 H 0.96998 * 120.00002 * 0.02562 * 17 16 13 40 40 H 1.08007 * 120.01272 * 0.04842 * 19 18 17 41 41 H 1.07999 * 119.92276 * 180.02562 * 20 19 18 42 42 H 1.08001 * 119.91137 * 180.27305 * 21 20 19 43 43 H 1.07997 * 119.98768 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47209 * 300.00320 * 25 24 23 45 45 H 1.08998 * 109.46704 * 59.99586 * 25 24 23 46 46 H 1.09004 * 109.47191 * 184.99988 * 26 25 24 47 47 H 1.08997 * 109.47475 * 305.00005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0268 3.3496 -1.5284 7 7 2.7112 4.0022 -0.6143 8 14 1.5830 4.1870 -3.1381 9 1 0.8157 3.2444 -3.9913 10 1 0.7551 5.3878 -2.8595 11 1 2.8249 4.5945 -3.8428 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0840 0.8983 14 1 4.0283 -0.1550 0.7697 15 8 3.6034 -1.8839 -0.2787 16 6 4.0308 -1.8496 2.0997 17 7 5.4715 -2.0498 1.9250 18 6 6.2072 -2.7297 2.9024 19 6 5.5742 -3.2144 4.0376 20 6 6.3030 -3.8851 5.0018 21 6 7.6627 -4.0741 4.8382 22 6 8.3006 -3.5938 3.7091 23 6 7.5774 -2.9207 2.7384 24 8 8.2036 -2.4472 1.6276 25 6 9.6099 -2.6803 1.5266 26 6 10.1335 -2.0806 0.2201 27 9 9.9906 -0.6894 0.2552 28 1 -0.3633 0.5374 0.8760 29 1 -0.3633 0.4899 -0.9034 30 1 -0.3632 -1.0273 0.0274 31 1 1.5612 1.9273 0.8310 32 1 3.0798 1.3444 0.1083 33 1 2.9857 4.9184 -0.7764 34 1 1.4357 -1.6956 1.2398 35 1 1.8935 -0.1783 2.0498 36 1 3.1334 -2.7278 -0.2348 37 1 3.5360 -2.8180 2.1752 38 1 3.8512 -1.2779 3.0102 39 1 5.9157 -1.7105 1.1322 40 1 4.5121 -3.0681 4.1680 41 1 5.8091 -4.2624 5.8850 42 1 8.2276 -4.6026 5.5919 43 1 9.3628 -3.7435 3.5843 44 1 10.1172 -2.2128 2.3705 45 1 9.8019 -3.7531 1.5363 46 1 11.1868 -2.3346 0.1002 47 1 9.5650 -2.4832 -0.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819489432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:46 Heat of formation + Delta-G solvation = -130.846076 kcal Electronic energy + Delta-G solvation = -27639.582484 eV Core-core repulsion = 23543.023628 eV Total energy + Delta-G solvation = -4096.558856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.61679 -41.15472 -39.62476 -38.44643 -37.29222 -35.81006 -34.62452 -32.28419 -31.58531 -30.66382 -29.61935 -29.08723 -27.02410 -25.51990 -24.75464 -23.35572 -22.90326 -21.92990 -21.71405 -19.36725 -18.64051 -18.09810 -17.61204 -17.58316 -17.12582 -16.74964 -16.57223 -16.51958 -16.23109 -15.94214 -15.74327 -15.46090 -15.43178 -15.23146 -14.89503 -14.48329 -14.38684 -14.03128 -13.92643 -13.76251 -13.27950 -13.10723 -12.91343 -12.61956 -12.57719 -12.50873 -12.36569 -12.28604 -12.23322 -12.08348 -11.88755 -11.67706 -11.54541 -11.32347 -11.01402 -10.85862 -10.62640 -9.43986 -8.97422 -8.22035 -8.09632 -6.31437 0.50955 0.70736 1.38119 1.39764 1.53092 2.15759 2.38649 2.48365 2.96436 3.10504 3.25029 3.56499 3.60457 3.84024 3.85274 3.99125 4.03310 4.04490 4.18737 4.21909 4.25375 4.33160 4.42197 4.52258 4.56473 4.58008 4.58135 4.67754 4.73373 4.77342 4.85014 4.94644 5.05039 5.09378 5.19777 5.25493 5.29637 5.48907 5.63599 5.72709 5.93225 6.04778 6.15641 6.32467 6.57448 6.64315 6.79079 6.84818 6.99642 7.38096 8.89367 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002889 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.287588 B = 9691.173274 C =11493.285919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.029 3.971 13 C 0.114 3.886 14 H 0.062 0.938 15 O -0.557 6.557 16 C 0.110 3.890 17 N -0.743 5.743 18 C 0.175 3.825 19 C -0.181 4.181 20 C -0.107 4.107 21 C -0.149 4.149 22 C -0.165 4.165 23 C 0.031 3.969 24 O -0.341 6.341 25 C 0.024 3.976 26 C 0.057 3.943 27 F -0.239 7.239 28 H 0.009 0.991 29 H 0.054 0.946 30 H 0.085 0.915 31 H -0.040 1.040 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.105 0.895 35 H 0.031 0.969 36 H 0.383 0.617 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 -21.274 10.509 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.206 1.206 12 C -0.100 4.100 13 C 0.054 3.946 14 H 0.080 0.920 15 O -0.363 6.363 16 C -0.015 4.015 17 N -0.373 5.373 18 C 0.072 3.928 19 C -0.204 4.204 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.185 4.185 23 C -0.017 4.017 24 O -0.256 6.256 25 C -0.051 4.051 26 C 0.003 3.997 27 F -0.221 7.221 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.104 0.896 31 H -0.023 1.023 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.231 0.769 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.153 0.847 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.036 -20.686 9.791 25.858 hybrid contribution -0.374 1.243 0.032 1.299 sum 11.662 -19.443 9.822 24.708 Atomic orbital electron populations 1.22222 0.87205 1.01302 0.99931 1.61920 1.08071 1.15055 1.41611 1.19395 0.93661 0.83986 0.94761 1.21505 1.34604 0.97371 1.02445 0.92042 1.25940 0.95085 0.98171 1.00742 1.70100 1.39540 1.11838 1.36168 0.85335 0.78041 0.78249 0.79010 1.18646 1.20167 1.20590 1.22720 0.95846 0.99329 0.92080 1.21842 0.94856 0.93219 0.84674 0.91961 1.86648 1.76044 1.34633 1.39006 1.21918 0.81202 1.00575 0.97776 1.44530 1.07196 1.62623 1.22972 1.17603 0.88252 0.95725 0.91210 1.20746 1.00828 1.04866 0.93999 1.21149 0.94347 0.98231 0.98877 1.21039 0.94945 1.02800 0.98119 1.21266 1.00693 1.01539 0.94954 1.18700 0.90927 1.02464 0.89636 1.86015 1.23699 1.76269 1.39609 1.23639 0.79241 1.02922 0.99347 1.22433 1.04704 0.74603 0.97948 1.92769 1.97691 1.33864 1.97745 0.97225 0.92757 0.89623 1.02285 0.97990 0.92774 0.87680 0.95039 0.76906 0.89573 0.91481 0.76691 0.84654 0.83694 0.83682 0.83611 0.90642 0.87776 0.84690 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.33 127.69 1.19 2.75 16 2 N -0.54 -23.45 4.60 -927.04 -4.27 -27.72 16 3 C 0.21 11.46 4.57 85.56 0.39 11.85 16 4 C -0.52 -30.69 8.54 25.60 0.22 -30.47 16 5 H 0.06 3.57 7.10 -2.91 -0.02 3.55 16 6 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 7 N -0.94 -58.38 13.29 21.45 0.28 -58.10 16 8 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 9 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.03 0.97 4.63 86.30 0.40 1.37 16 13 C 0.11 3.76 3.02 30.59 0.09 3.86 16 14 H 0.06 2.65 6.55 -2.39 -0.02 2.63 16 15 O -0.56 -18.60 13.18 -148.98 -1.96 -20.56 16 16 C 0.11 2.81 4.56 86.38 0.39 3.20 16 17 N -0.74 -21.27 5.68 -338.96 -1.93 -23.19 16 18 C 0.18 4.65 6.67 38.22 0.25 4.91 16 19 C -0.18 -3.98 9.31 22.38 0.21 -3.77 16 20 C -0.11 -1.93 10.04 22.27 0.22 -1.70 16 21 C -0.15 -2.53 10.04 22.29 0.22 -2.31 16 22 C -0.17 -3.18 9.04 22.34 0.20 -2.97 16 23 C 0.03 0.77 6.70 22.59 0.15 0.92 16 24 O -0.34 -8.83 9.38 -93.72 -0.88 -9.71 16 25 C 0.02 0.38 5.20 71.98 0.37 0.76 16 26 C 0.06 0.89 7.92 71.98 0.57 1.46 16 27 F -0.24 -6.31 17.35 44.97 0.78 -5.53 16 28 H 0.01 0.35 8.13 -2.38 -0.02 0.33 16 29 H 0.05 2.24 6.90 -2.39 -0.02 2.22 16 30 H 0.09 2.49 7.97 -2.39 -0.02 2.47 16 31 H -0.04 -2.40 8.11 -2.39 -0.02 -2.42 16 32 H 0.00 0.12 6.38 -2.38 -0.02 0.11 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.11 2.61 7.87 -2.39 -0.02 2.60 16 35 H 0.03 1.07 8.05 -2.38 -0.02 1.05 16 36 H 0.38 9.13 9.04 -74.06 -0.67 8.46 16 37 H 0.09 1.72 7.96 -2.39 -0.02 1.70 16 38 H 0.07 1.67 7.95 -2.39 -0.02 1.65 16 39 H 0.40 13.09 7.84 -92.71 -0.73 12.37 16 40 H 0.14 2.59 6.74 -2.91 -0.02 2.57 16 41 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.15 1.97 6.30 -2.91 -0.02 1.95 16 44 H 0.08 1.12 7.66 -2.39 -0.02 1.11 16 45 H 0.10 1.06 7.66 -2.39 -0.02 1.04 16 46 H 0.14 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -77.47 388.28 -0.99 -78.46 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.41 Total: 28.14 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 5.36 Total: -9.80 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -5.91 Total: -109.01 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -2.84 Total: -30.27 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.78 Total: -5.53 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.47 -0.99 -78.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819489432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.385 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds