Wall clock time and date at job start Tue Mar 31 2020 14:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00162 * 2 1 4 4 C 1.50708 * 109.47416 * 66.04278 * 3 2 1 5 5 H 1.08005 * 119.99504 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00341 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99854 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99929 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47323 * 89.99924 * 8 6 4 10 10 H 1.48500 * 109.47073 * 209.99867 * 8 6 4 11 11 H 1.48498 * 109.47079 * 329.99908 * 8 6 4 12 12 C 1.46901 * 111.00335 * 236.04153 * 2 1 3 13 13 C 1.52999 * 109.47469 * 199.85341 * 12 2 1 14 14 H 1.09013 * 109.46905 * 300.46686 * 13 12 2 15 15 O 1.42895 * 109.47164 * 60.46264 * 13 12 2 16 16 C 1.53001 * 109.47387 * 180.46685 * 13 12 2 17 17 N 1.46498 * 109.47174 * 180.02562 * 16 13 12 18 18 C 1.39960 * 120.00081 * 180.02562 * 17 16 13 19 19 C 1.38727 * 120.08807 * 0.02562 * 18 17 16 20 20 C 1.38226 * 119.97886 * 179.97438 * 19 18 17 21 21 C 1.38251 * 120.16028 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.18040 * 0.02562 * 21 20 19 23 23 C 1.38500 * 120.01791 * 0.02562 * 22 21 20 24 24 O 1.36015 * 120.07873 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99909 * 359.97438 * 24 23 22 26 26 C 1.53001 * 109.47040 * 179.97438 * 25 24 23 27 27 F 1.39905 * 109.46913 * 65.00111 * 26 25 24 28 28 H 1.09000 * 109.46865 * 188.77284 * 1 2 3 29 29 H 1.08999 * 109.47268 * 308.78139 * 1 2 3 30 30 H 1.09003 * 109.46555 * 68.78137 * 1 2 3 31 31 H 1.08999 * 109.47490 * 186.03758 * 3 2 1 32 32 H 1.08997 * 109.47318 * 306.04699 * 3 2 1 33 33 H 0.97002 * 120.00080 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46522 * 79.85716 * 12 2 1 35 35 H 1.08998 * 109.47341 * 319.85572 * 12 2 1 36 36 H 0.96696 * 114.00025 * 59.99986 * 15 13 12 37 37 H 1.08997 * 109.46681 * 59.99825 * 16 13 12 38 38 H 1.08999 * 109.46559 * 300.00102 * 16 13 12 39 39 H 0.97003 * 119.99879 * 359.97438 * 17 16 13 40 40 H 1.08001 * 120.00787 * 359.95900 * 19 18 17 41 41 H 1.07996 * 119.91887 * 179.97438 * 20 19 18 42 42 H 1.08004 * 119.90906 * 180.27997 * 21 20 19 43 43 H 1.08000 * 119.98713 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47649 * 299.99595 * 25 24 23 45 45 H 1.09005 * 109.47338 * 60.00358 * 25 24 23 46 46 H 1.09000 * 109.47164 * 185.00083 * 26 25 24 47 47 H 1.09000 * 109.47311 * 304.99948 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0745 1.5113 2.0488 6 6 2.0267 3.3495 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5829 4.1868 3.1382 9 1 2.6603 3.9507 4.1326 10 1 1.4300 5.6464 2.9112 11 1 0.3055 3.6291 3.6505 12 6 1.9955 -0.7661 -1.1375 13 6 3.4449 -1.1667 -0.8555 14 1 4.0464 -0.2706 -0.7025 15 8 3.4945 -1.9798 0.3186 16 6 3.9970 -1.9546 -2.0452 17 7 5.3846 -2.3388 -1.7749 18 6 6.1057 -3.0715 -2.7247 19 6 5.5083 -3.4345 -3.9230 20 6 6.2226 -4.1576 -4.8597 21 6 7.5324 -4.5203 -4.6058 22 6 8.1343 -4.1619 -3.4136 23 6 7.4251 -3.4383 -2.4694 24 8 8.0162 -3.0847 -1.2965 25 6 9.3718 -3.4937 -1.1040 26 6 9.8621 -3.0080 0.2615 27 9 9.1357 -3.6470 1.2721 28 1 -0.3633 -1.0157 0.1567 29 1 -0.3634 0.6437 0.8011 30 1 -0.3632 0.3720 -0.9581 31 1 3.0797 1.3444 -0.1081 32 1 1.5611 1.9273 -0.8309 33 1 2.9866 4.9180 0.7769 34 1 1.9567 -0.1526 -2.0377 35 1 1.3924 -1.6624 -1.2823 36 1 2.9803 -2.7961 0.2537 37 1 3.9592 -1.3344 -2.9407 38 1 3.3955 -2.8507 -2.1981 39 1 5.8040 -2.0847 -0.9379 40 1 4.4853 -3.1523 -4.1238 41 1 5.7565 -4.4400 -5.7920 42 1 8.0882 -5.0814 -5.3425 43 1 9.1578 -4.4465 -3.2187 44 1 9.4328 -4.5812 -1.1465 45 1 9.9958 -3.0638 -1.8876 46 1 10.9210 -3.2420 0.3716 47 1 9.7185 -1.9301 0.3367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819489434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:50 Heat of formation + Delta-G solvation = -105.488597 kcal Electronic energy + Delta-G solvation = -27595.353414 eV Core-core repulsion = 23499.894141 eV Total energy + Delta-G solvation = -4095.459274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.80043 -40.32932 -38.33673 -37.50677 -35.82325 -34.70344 -32.48816 -31.49975 -30.53381 -29.80870 -28.35372 -27.26857 -25.76527 -24.22740 -23.47059 -22.27686 -21.84644 -21.00809 -20.09289 -18.55305 -17.20005 -16.87842 -16.65576 -16.34860 -15.92962 -15.78684 -15.61548 -15.12750 -15.06888 -14.70417 -14.69445 -14.45809 -14.27595 -13.72130 -13.49804 -13.44081 -13.15257 -13.01619 -12.57530 -12.25236 -11.95833 -11.78872 -11.55092 -11.46558 -11.40470 -11.19647 -11.16859 -10.97702 -10.90349 -10.72901 -10.62036 -10.37200 -10.11221 -9.77938 -9.67053 -9.15051 -8.63183 -8.41523 -7.22495 -7.17759 -6.01287 -4.01790 1.32007 1.53411 2.89621 3.34292 3.39899 3.43226 3.45401 3.78057 4.19588 4.42381 4.43552 4.62330 4.65027 4.70495 4.79543 4.82006 4.89524 4.98801 5.17565 5.22117 5.30634 5.35578 5.39038 5.44896 5.49909 5.57963 5.63249 5.68544 5.73510 5.99723 6.05728 6.11948 6.25813 6.30714 6.41112 6.52079 6.68277 6.72533 7.00190 7.26126 7.31005 7.47671 7.80200 7.85261 8.05418 8.09793 8.20535 8.55317 9.05415 9.62128 11.09821 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.002760 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.050495 B =10142.054770 C =11642.402316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.029 3.971 13 C 0.105 3.895 14 H 0.108 0.892 15 O -0.537 6.537 16 C 0.094 3.906 17 N -0.731 5.731 18 C 0.206 3.794 19 C -0.175 4.175 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.163 4.163 23 C 0.050 3.950 24 O -0.312 6.312 25 C 0.031 3.969 26 C 0.066 3.934 27 F -0.209 7.209 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.008 0.992 31 H 0.030 0.970 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.364 0.636 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.412 0.588 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.926 -17.963 -10.372 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.101 4.101 13 C 0.045 3.955 14 H 0.125 0.875 15 O -0.340 6.340 16 C -0.031 4.031 17 N -0.361 5.361 18 C 0.101 3.899 19 C -0.198 4.198 20 C -0.122 4.122 21 C -0.171 4.171 22 C -0.182 4.182 23 C 0.002 3.998 24 O -0.226 6.226 25 C -0.046 4.046 26 C 0.011 3.989 27 F -0.190 7.190 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.210 0.790 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.243 -17.359 -9.604 23.313 hybrid contribution -0.470 0.519 -0.108 0.708 sum 11.773 -16.840 -9.713 22.727 Atomic orbital electron populations 1.22228 0.88720 1.00015 1.00118 1.62006 1.06621 1.17807 1.39054 1.19775 0.95415 0.81504 0.96608 1.21151 1.34695 0.96776 1.01670 0.91846 1.24985 0.95342 0.97371 0.96975 1.69956 1.38516 1.11468 1.34046 0.86493 0.78884 0.78324 0.83681 1.20590 1.21376 1.19877 1.22593 0.95303 0.98383 0.93856 1.22109 0.96167 0.93606 0.83624 0.87454 1.86689 1.73598 1.36007 1.37739 1.22083 0.82699 0.98923 0.99438 1.44532 1.12203 1.59490 1.19909 1.17258 0.88157 0.93896 0.90580 1.20512 1.00831 1.05134 0.93321 1.20791 0.94365 0.98263 0.98758 1.20622 0.95588 1.03764 0.97150 1.20934 0.99959 1.02214 0.95106 1.18397 0.91960 1.02132 0.87267 1.86040 1.26826 1.74775 1.34995 1.23369 0.82694 1.00629 0.97862 1.22050 0.95115 0.98698 0.83009 1.92825 1.80171 1.83959 1.62080 0.93701 0.90398 0.97345 0.95206 0.99322 0.92973 0.94701 0.91924 0.79009 0.91614 0.92290 0.75186 0.85518 0.86215 0.86438 0.85933 0.91128 0.90524 0.88766 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.37 60.06 0.56 1.29 16 2 N -0.53 -11.36 4.56 -244.37 -1.11 -12.47 16 3 C 0.19 5.01 4.55 -4.97 -0.02 4.99 16 4 C -0.50 -14.37 8.39 -34.44 -0.29 -14.66 16 5 H 0.06 1.80 7.17 -52.48 -0.38 1.43 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.03 0.48 4.66 -3.82 -0.02 0.46 16 13 C 0.11 1.67 3.12 -26.73 -0.08 1.59 16 14 H 0.11 2.05 6.78 -51.92 -0.35 1.70 16 15 O -0.54 -8.98 12.96 -35.23 -0.46 -9.44 16 16 C 0.09 1.20 4.58 -4.04 -0.02 1.18 16 17 N -0.73 -10.00 5.62 -58.50 -0.33 -10.33 16 18 C 0.21 2.71 6.67 -83.57 -0.56 2.15 16 19 C -0.17 -2.01 9.31 -39.41 -0.37 -2.38 16 20 C -0.10 -1.04 10.04 -39.58 -0.40 -1.44 16 21 C -0.15 -1.47 10.04 -39.56 -0.40 -1.87 16 22 C -0.16 -1.69 9.04 -39.47 -0.36 -2.05 16 23 C 0.05 0.63 6.70 -39.09 -0.26 0.37 16 24 O -0.31 -3.90 9.38 -19.79 -0.19 -4.09 16 25 C 0.03 0.26 5.20 37.16 0.19 0.45 16 26 C 0.07 0.52 7.93 37.16 0.29 0.81 16 27 F -0.21 -2.53 17.35 2.25 0.04 -2.49 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.64 6.67 -51.93 -0.35 1.29 16 30 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 31 H 0.03 0.83 6.63 -51.93 -0.34 0.49 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.03 0.59 8.00 -51.93 -0.42 0.18 16 35 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 36 H 0.36 4.73 9.04 45.56 0.41 5.14 16 37 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 38 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 39 H 0.41 6.21 7.71 -40.82 -0.31 5.90 16 40 H 0.13 1.31 6.74 -52.49 -0.35 0.96 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.12 0.97 6.30 -52.49 -0.33 0.64 16 44 H 0.07 0.53 7.66 -51.93 -0.40 0.14 16 45 H 0.08 0.47 7.66 -51.93 -0.40 0.08 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -33.56 388.36 -8.84 -42.40 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.55 Total: 7.47 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.82 Total: -7.64 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.71 Total: -49.04 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.64 Total: -13.53 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.56 -8.84 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819489434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.088 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds