Wall clock time and date at job start Tue Mar 31 2020 14:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00162 * 2 1 4 4 C 1.50708 * 109.47416 * 66.04278 * 3 2 1 5 5 H 1.08005 * 119.99504 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00341 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99854 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99929 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47323 * 89.99924 * 8 6 4 10 10 H 1.48500 * 109.47073 * 209.99867 * 8 6 4 11 11 H 1.48498 * 109.47079 * 329.99908 * 8 6 4 12 12 C 1.46901 * 111.00335 * 236.04153 * 2 1 3 13 13 C 1.52999 * 109.47469 * 199.85341 * 12 2 1 14 14 H 1.09013 * 109.46905 * 300.46686 * 13 12 2 15 15 O 1.42895 * 109.47164 * 60.46264 * 13 12 2 16 16 C 1.53001 * 109.47387 * 180.46685 * 13 12 2 17 17 N 1.46498 * 109.47174 * 180.02562 * 16 13 12 18 18 C 1.39960 * 120.00081 * 180.02562 * 17 16 13 19 19 C 1.38727 * 120.08807 * 0.02562 * 18 17 16 20 20 C 1.38226 * 119.97886 * 179.97438 * 19 18 17 21 21 C 1.38251 * 120.16028 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.18040 * 0.02562 * 21 20 19 23 23 C 1.38500 * 120.01791 * 0.02562 * 22 21 20 24 24 O 1.36015 * 120.07873 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99909 * 359.97438 * 24 23 22 26 26 C 1.53001 * 109.47040 * 179.97438 * 25 24 23 27 27 F 1.39905 * 109.46913 * 65.00111 * 26 25 24 28 28 H 1.09000 * 109.46865 * 188.77284 * 1 2 3 29 29 H 1.08999 * 109.47268 * 308.78139 * 1 2 3 30 30 H 1.09003 * 109.46555 * 68.78137 * 1 2 3 31 31 H 1.08999 * 109.47490 * 186.03758 * 3 2 1 32 32 H 1.08997 * 109.47318 * 306.04699 * 3 2 1 33 33 H 0.97002 * 120.00080 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46522 * 79.85716 * 12 2 1 35 35 H 1.08998 * 109.47341 * 319.85572 * 12 2 1 36 36 H 0.96696 * 114.00025 * 59.99986 * 15 13 12 37 37 H 1.08997 * 109.46681 * 59.99825 * 16 13 12 38 38 H 1.08999 * 109.46559 * 300.00102 * 16 13 12 39 39 H 0.97003 * 119.99879 * 359.97438 * 17 16 13 40 40 H 1.08001 * 120.00787 * 359.95900 * 19 18 17 41 41 H 1.07996 * 119.91887 * 179.97438 * 20 19 18 42 42 H 1.08004 * 119.90906 * 180.27997 * 21 20 19 43 43 H 1.08000 * 119.98713 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47649 * 299.99595 * 25 24 23 45 45 H 1.09005 * 109.47338 * 60.00358 * 25 24 23 46 46 H 1.09000 * 109.47164 * 185.00083 * 26 25 24 47 47 H 1.09000 * 109.47311 * 304.99948 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0745 1.5113 2.0488 6 6 2.0267 3.3495 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5829 4.1868 3.1382 9 1 2.6603 3.9507 4.1326 10 1 1.4300 5.6464 2.9112 11 1 0.3055 3.6291 3.6505 12 6 1.9955 -0.7661 -1.1375 13 6 3.4449 -1.1667 -0.8555 14 1 4.0464 -0.2706 -0.7025 15 8 3.4945 -1.9798 0.3186 16 6 3.9970 -1.9546 -2.0452 17 7 5.3846 -2.3388 -1.7749 18 6 6.1057 -3.0715 -2.7247 19 6 5.5083 -3.4345 -3.9230 20 6 6.2226 -4.1576 -4.8597 21 6 7.5324 -4.5203 -4.6058 22 6 8.1343 -4.1619 -3.4136 23 6 7.4251 -3.4383 -2.4694 24 8 8.0162 -3.0847 -1.2965 25 6 9.3718 -3.4937 -1.1040 26 6 9.8621 -3.0080 0.2615 27 9 9.1357 -3.6470 1.2721 28 1 -0.3633 -1.0157 0.1567 29 1 -0.3634 0.6437 0.8011 30 1 -0.3632 0.3720 -0.9581 31 1 3.0797 1.3444 -0.1081 32 1 1.5611 1.9273 -0.8309 33 1 2.9866 4.9180 0.7769 34 1 1.9567 -0.1526 -2.0377 35 1 1.3924 -1.6624 -1.2823 36 1 2.9803 -2.7961 0.2537 37 1 3.9592 -1.3344 -2.9407 38 1 3.3955 -2.8507 -2.1981 39 1 5.8040 -2.0847 -0.9379 40 1 4.4853 -3.1523 -4.1238 41 1 5.7565 -4.4400 -5.7920 42 1 8.0882 -5.0814 -5.3425 43 1 9.1578 -4.4465 -3.2187 44 1 9.4328 -4.5812 -1.1465 45 1 9.9958 -3.0638 -1.8876 46 1 10.9210 -3.2420 0.3716 47 1 9.7185 -1.9301 0.3367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819489434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:49 Heat of formation + Delta-G solvation = -130.723093 kcal Electronic energy + Delta-G solvation = -27596.447664 eV Core-core repulsion = 23499.894141 eV Total energy + Delta-G solvation = -4096.553523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.60254 -41.15280 -39.60972 -38.44154 -37.30360 -35.78810 -34.62106 -32.28259 -31.58708 -30.66514 -29.61770 -29.07425 -27.03074 -25.51925 -24.74334 -23.32276 -22.89890 -21.91823 -21.72975 -19.36510 -18.62780 -18.09220 -17.62266 -17.56684 -17.10722 -16.76539 -16.57775 -16.52405 -16.21826 -15.93662 -15.73326 -15.45758 -15.42295 -15.22360 -14.87938 -14.48698 -14.36216 -14.00939 -13.90948 -13.79214 -13.28685 -13.11631 -12.92665 -12.60850 -12.55512 -12.50366 -12.35693 -12.26498 -12.22985 -12.07347 -11.89017 -11.67256 -11.56035 -11.34670 -11.01191 -10.85807 -10.62101 -9.43802 -8.96016 -8.21800 -8.09213 -6.31050 0.51103 0.70932 1.38794 1.41171 1.51638 2.15961 2.38781 2.48220 2.96609 3.10646 3.25972 3.56462 3.61376 3.84316 3.86295 3.99349 4.03372 4.04184 4.19127 4.22383 4.25845 4.33431 4.42573 4.52378 4.55242 4.57852 4.58685 4.68768 4.73741 4.77698 4.85643 4.94832 5.06323 5.09656 5.20580 5.25790 5.29124 5.49087 5.63704 5.72947 5.93251 6.05207 6.15756 6.33233 6.57825 6.64862 6.80180 6.84857 6.98708 7.38272 8.89369 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.002760 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.050495 B =10142.054770 C =11642.402316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.029 3.971 13 C 0.116 3.884 14 H 0.064 0.936 15 O -0.557 6.557 16 C 0.110 3.890 17 N -0.742 5.742 18 C 0.176 3.824 19 C -0.182 4.182 20 C -0.108 4.108 21 C -0.149 4.149 22 C -0.165 4.165 23 C 0.031 3.969 24 O -0.340 6.340 25 C 0.024 3.976 26 C 0.058 3.942 27 F -0.237 7.237 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.002 0.998 32 H -0.039 1.039 33 H 0.264 0.736 34 H 0.033 0.967 35 H 0.102 0.898 36 H 0.382 0.618 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.400 0.600 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.135 0.865 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -19.800 -11.189 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.187 1.187 12 C -0.100 4.100 13 C 0.055 3.945 14 H 0.082 0.918 15 O -0.363 6.363 16 C -0.015 4.015 17 N -0.372 5.372 18 C 0.072 3.928 19 C -0.205 4.205 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.184 4.184 23 C -0.017 4.017 24 O -0.255 6.255 25 C -0.051 4.051 26 C 0.004 3.996 27 F -0.218 7.218 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.020 0.980 32 H -0.021 1.021 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.234 0.766 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.153 0.847 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.413 -19.239 -10.450 25.168 hybrid contribution -0.454 1.006 0.075 1.106 sum 11.960 -18.233 -10.375 24.148 Atomic orbital electron populations 1.22246 0.87263 1.01810 0.99573 1.61904 1.08051 1.15055 1.41691 1.19379 0.93608 0.83988 0.94760 1.21482 1.34717 0.97395 1.02473 0.92107 1.25911 0.95087 0.98115 1.00667 1.70082 1.39457 1.11895 1.36132 0.85402 0.78954 0.77336 0.79053 1.20145 1.20555 1.18723 1.22707 0.96168 0.99031 0.92066 1.21836 0.95181 0.92705 0.84744 0.91785 1.86644 1.74268 1.37033 1.38365 1.21899 0.82778 0.99302 0.97556 1.44497 1.12455 1.60431 1.19836 1.17594 0.88923 0.95028 0.91205 1.20745 1.01446 1.05223 0.93069 1.21145 0.94641 0.97533 0.99305 1.21035 0.95646 1.02960 0.97274 1.21264 1.00993 1.01381 0.94802 1.18688 0.92211 1.02895 0.87890 1.86013 1.28817 1.75356 1.35351 1.23637 0.81406 1.01362 0.98744 1.22403 0.96866 0.98349 0.81979 1.92764 1.81134 1.84473 1.63428 0.89951 0.92751 0.96729 0.98038 1.02141 0.92732 0.94836 0.87998 0.77021 0.91337 0.89895 0.76569 0.84716 0.83752 0.83706 0.83599 0.90298 0.88134 0.84711 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 9.37 127.69 1.20 2.67 16 2 N -0.54 -23.43 4.56 -927.05 -4.22 -27.66 16 3 C 0.21 11.39 4.55 85.56 0.39 11.78 16 4 C -0.52 -30.57 8.39 25.60 0.21 -30.35 16 5 H 0.06 3.51 7.17 -2.91 -0.02 3.49 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 8 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 12 C 0.03 0.97 4.66 86.30 0.40 1.37 16 13 C 0.12 3.77 3.12 30.59 0.10 3.87 16 14 H 0.06 2.65 6.78 -2.38 -0.02 2.63 16 15 O -0.56 -18.83 12.96 -148.98 -1.93 -20.76 16 16 C 0.11 2.78 4.58 86.38 0.40 3.17 16 17 N -0.74 -20.90 5.62 -338.99 -1.91 -22.80 16 18 C 0.18 4.61 6.67 38.22 0.25 4.87 16 19 C -0.18 -3.97 9.31 22.38 0.21 -3.77 16 20 C -0.11 -1.92 10.04 22.27 0.22 -1.70 16 21 C -0.15 -2.51 10.04 22.28 0.22 -2.29 16 22 C -0.17 -3.13 9.04 22.34 0.20 -2.93 16 23 C 0.03 0.77 6.70 22.59 0.15 0.92 16 24 O -0.34 -8.65 9.38 -93.72 -0.88 -9.53 16 25 C 0.02 0.37 5.20 71.98 0.37 0.75 16 26 C 0.06 0.88 7.93 71.98 0.57 1.45 16 27 F -0.24 -5.83 17.35 44.97 0.78 -5.05 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 2.29 6.67 -2.39 -0.02 2.27 16 30 H 0.01 0.52 8.13 -2.39 -0.02 0.50 16 31 H 0.00 0.09 6.63 -2.39 -0.02 0.08 16 32 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 35 H 0.10 2.59 7.94 -2.39 -0.02 2.57 16 36 H 0.38 9.52 9.04 -74.06 -0.67 8.85 16 37 H 0.07 1.68 7.95 -2.39 -0.02 1.66 16 38 H 0.08 1.70 7.96 -2.39 -0.02 1.68 16 39 H 0.40 12.88 7.71 -92.71 -0.71 12.16 16 40 H 0.14 2.59 6.74 -2.91 -0.02 2.57 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.93 6.30 -2.91 -0.02 1.92 16 44 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 45 H 0.10 1.06 7.66 -2.38 -0.02 1.04 16 46 H 0.14 0.88 8.14 -2.39 -0.02 0.87 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.82 388.36 -0.88 -76.71 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.40 Total: 28.50 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.36 Total: -9.72 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -5.85 Total: -107.78 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -2.81 Total: -30.29 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.78 Total: -5.05 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.82 -0.88 -76.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819489434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.017 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds